Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 AC023051.1-201ENST00000414098 876 ntTSL 5 BASIC0.33□□□□□ -2.36
SKA3Q8IX90 AL358176.2-201ENST00000425769 204 ntBASIC0.33□□□□□ -2.36
SKA3Q8IX90 SNORD127-201ENST00000458892 86 ntBASIC0.33□□□□□ -2.36
SKA3Q8IX90 MIR6515-201ENST00000619843 57 ntBASIC0.33□□□□□ -2.36
SKA3Q8IX90 MIR6841-201ENST00000637129 72 ntBASIC0.33□□□□□ -2.36
SKA3Q8IX90 MIRLET7D-201ENST00000362263 87 ntBASIC0.32□□□□□ -2.36
SKA3Q8IX90 Y_RNA.355-201ENST00000365462 98 ntBASIC0.32□□□□□ -2.36
SKA3Q8IX90 Y_RNA.430-201ENST00000384081 110 ntBASIC0.32□□□□□ -2.36
SKA3Q8IX90 RNU6-679P-201ENST00000391003 106 ntBASIC0.32□□□□□ -2.36
SKA3Q8IX90 SNORD93-201ENST00000408813 74 ntBASIC0.32□□□□□ -2.36
SKA3Q8IX90 ATP6V0E1P1-201ENST00000412537 226 ntBASIC0.32□□□□□ -2.36
SKA3Q8IX90 AC002350.1-201ENST00000490759 375 ntBASIC0.32□□□□□ -2.36
SKA3Q8IX90 MIR378D2-201ENST00000580636 98 ntBASIC0.32□□□□□ -2.36
SKA3Q8IX90 CALCRL-202ENST00000409998 5223 ntAPPRIS P1 TSL 5 BASIC0.31□□□□□ -2.36
SKA3Q8IX90 Y_RNA.42-201ENST00000362660 108 ntBASIC0.31□□□□□ -2.36
SKA3Q8IX90 SNORA22.1-201ENST00000362701 134 ntBASIC0.31□□□□□ -2.36
SKA3Q8IX90 RNU4-16P-201ENST00000364737 141 ntBASIC0.31□□□□□ -2.36
SKA3Q8IX90 SNORA50A-201ENST00000384225 134 ntBASIC0.31□□□□□ -2.36
SKA3Q8IX90 RNA5SP127-201ENST00000411051 133 ntBASIC0.31□□□□□ -2.36
SKA3Q8IX90 MTCYBP9-201ENST00000431021 303 ntBASIC0.31□□□□□ -2.36
SKA3Q8IX90 Y_RNA.797-201ENST00000515977 94 ntBASIC0.31□□□□□ -2.36
SKA3Q8IX90 RNA5SP94-201ENST00000516917 108 ntBASIC0.31□□□□□ -2.36
SKA3Q8IX90 RNU6-448P-201ENST00000517052 107 ntBASIC0.31□□□□□ -2.36
SKA3Q8IX90 MIR3152-201ENST00000579801 74 ntBASIC0.31□□□□□ -2.36
SKA3Q8IX90 AC243829.6-201ENST00000612652 106 ntBASIC0.31□□□□□ -2.36
SKA3Q8IX90 AC021613.1-201ENST00000623880 111 ntBASIC0.31□□□□□ -2.36
SKA3Q8IX90 RNA5SP517-201ENST00000364724 117 ntBASIC0.3□□□□□ -2.36
SKA3Q8IX90 RNU6-923P-201ENST00000364753 107 ntBASIC0.3□□□□□ -2.36
SKA3Q8IX90 RNU6-643P-201ENST00000384018 107 ntBASIC0.3□□□□□ -2.36
SKA3Q8IX90 Y_RNA.477-201ENST00000384352 108 ntBASIC0.3□□□□□ -2.36
SKA3Q8IX90 RNU6ATAC42P-201ENST00000408637 95 ntBASIC0.3□□□□□ -2.36
SKA3Q8IX90 MTND2P23-201ENST00000422990 651 ntBASIC0.3□□□□□ -2.36
SKA3Q8IX90 MTND1P19-201ENST00000511780 315 ntBASIC0.3□□□□□ -2.36
SKA3Q8IX90 AC141846.1-201ENST00000568348 142 ntBASIC0.3□□□□□ -2.36
SKA3Q8IX90 MIR8066-201ENST00000617280 78 ntBASIC0.3□□□□□ -2.36
SKA3Q8IX90 RNU6-403P-201ENST00000363163 104 ntBASIC0.29□□□□□ -2.36
SKA3Q8IX90 Y_RNA.121-201ENST00000363309 113 ntBASIC0.29□□□□□ -2.36
SKA3Q8IX90 RNU6-694P-201ENST00000364071 147 ntBASIC0.29□□□□□ -2.36
SKA3Q8IX90 Y_RNA.269-201ENST00000364685 89 ntBASIC0.29□□□□□ -2.36
SKA3Q8IX90 RNY4P28-201ENST00000365281 93 ntBASIC0.29□□□□□ -2.36
SKA3Q8IX90 RNA5SP117-201ENST00000365294 118 ntBASIC0.29□□□□□ -2.36
SKA3Q8IX90 Y_RNA.571-201ENST00000384753 98 ntBASIC0.29□□□□□ -2.36
SKA3Q8IX90 MIR624-201ENST00000385217 97 ntBASIC0.29□□□□□ -2.36
SKA3Q8IX90 Y_RNA.617-201ENST00000410920 90 ntBASIC0.29□□□□□ -2.36
SKA3Q8IX90 SNORD71-201ENST00000411292 86 ntBASIC0.29□□□□□ -2.36
SKA3Q8IX90 RNU6-1149P-201ENST00000516810 97 ntBASIC0.29□□□□□ -2.36
SKA3Q8IX90 AP003327.1-201ENST00000529684 127 ntBASIC0.29□□□□□ -2.36
SKA3Q8IX90 AC133485.4-201ENST00000561835 220 ntBASIC0.29□□□□□ -2.36
SKA3Q8IX90 MIR4308-201ENST00000580634 81 ntBASIC0.29□□□□□ -2.36
SKA3Q8IX90 SNORA25.18-201ENST00000607153 114 ntBASIC0.29□□□□□ -2.36
SKA3Q8IX90 uc_338.16-201ENST00000621804 95 ntBASIC0.29□□□□□ -2.36
SKA3Q8IX90 Y_RNA.65-201ENST00000362846 100 ntBASIC0.28□□□□□ -2.36
SKA3Q8IX90 Y_RNA.182-201ENST00000363880 111 ntBASIC0.28□□□□□ -2.36
SKA3Q8IX90 Y_RNA.567-201ENST00000384736 106 ntBASIC0.28□□□□□ -2.36
SKA3Q8IX90 MIR1302-3-201ENST00000408128 138 ntBASIC0.28□□□□□ -2.36
SKA3Q8IX90 SNORA40.8-201ENST00000411034 126 ntBASIC0.28□□□□□ -2.36
SKA3Q8IX90 Y_RNA.626-201ENST00000411288 95 ntBASIC0.28□□□□□ -2.36
SKA3Q8IX90 SNORA25.12-201ENST00000516202 82 ntBASIC0.28□□□□□ -2.36
SKA3Q8IX90 Y_RNA.668-201ENST00000516233 93 ntBASIC0.28□□□□□ -2.36
SKA3Q8IX90 SCARNA15-202ENST00000516881 127 ntBASIC0.28□□□□□ -2.36
SKA3Q8IX90 DEFB131B-201ENST00000530210 213 ntAPPRIS P1 TSL 1 (best) BASIC0.28□□□□□ -2.36
SKA3Q8IX90 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC0.28□□□□□ -2.36
SKA3Q8IX90 C9orf84-203ENST00000374287 4721 ntAPPRIS P3 TSL 5 BASIC0.28□□□□□ -2.37
SKA3Q8IX90 DEFB131A-201ENST00000334879 213 ntAPPRIS P1 TSL 1 (best) BASIC0.27□□□□□ -2.37
SKA3Q8IX90 Y_RNA.13-201ENST00000362403 112 ntBASIC0.27□□□□□ -2.37
SKA3Q8IX90 RNU6-275P-201ENST00000364910 107 ntBASIC0.27□□□□□ -2.37
SKA3Q8IX90 Y_RNA.350-201ENST00000365409 98 ntBASIC0.27□□□□□ -2.37
SKA3Q8IX90 VTRNA1-3-201ENST00000365645 89 ntBASIC0.27□□□□□ -2.37
SKA3Q8IX90 SNORA18-201ENST00000384416 132 ntBASIC0.27□□□□□ -2.37
SKA3Q8IX90 Y_RNA.508-201ENST00000384502 114 ntBASIC0.27□□□□□ -2.37
SKA3Q8IX90 RNU4-70P-201ENST00000384579 139 ntBASIC0.27□□□□□ -2.37
SKA3Q8IX90 Y_RNA.539-201ENST00000384635 107 ntBASIC0.27□□□□□ -2.37
SKA3Q8IX90 Y_RNA.556-201ENST00000384677 113 ntBASIC0.27□□□□□ -2.37
SKA3Q8IX90 U8.15-201ENST00000390947 134 ntBASIC0.27□□□□□ -2.37
SKA3Q8IX90 snoU13.18-201ENST00000459483 104 ntBASIC0.27□□□□□ -2.37
SKA3Q8IX90 Y_RNA.673-201ENST00000516306 88 ntBASIC0.27□□□□□ -2.37
SKA3Q8IX90 MIR3678-201ENST00000578455 94 ntBASIC0.27□□□□□ -2.37
SKA3Q8IX90 Y_RNA.20-201ENST00000362479 113 ntBASIC0.26□□□□□ -2.37
SKA3Q8IX90 Y_RNA.133-201ENST00000363428 110 ntBASIC0.26□□□□□ -2.37
SKA3Q8IX90 RNY1-201ENST00000364228 113 ntBASIC0.26□□□□□ -2.37
SKA3Q8IX90 SNORA8.2-201ENST00000384372 139 ntBASIC0.26□□□□□ -2.37
SKA3Q8IX90 SNORA72.6-201ENST00000384520 129 ntBASIC0.26□□□□□ -2.37
SKA3Q8IX90 MIR518A1-201ENST00000385068 85 ntBASIC0.26□□□□□ -2.37
SKA3Q8IX90 Y_RNA.588-201ENST00000391254 102 ntBASIC0.26□□□□□ -2.37
SKA3Q8IX90 RNU6-469P-201ENST00000516253 101 ntBASIC0.26□□□□□ -2.37
SKA3Q8IX90 RNU6-327P-201ENST00000516270 127 ntBASIC0.26□□□□□ -2.37
SKA3Q8IX90 RNA5SP134-201ENST00000516492 96 ntBASIC0.26□□□□□ -2.37
SKA3Q8IX90 NEAT1_2.1-201ENST00000620525 105 ntBASIC0.26□□□□□ -2.37
SKA3Q8IX90 MTND5P32-201ENST00000560711 1802 ntBASIC0.26□□□□□ -2.37
SKA3Q8IX90 AL589743.1-201ENST00000551932 2712 ntBASIC0.25□□□□□ -2.37
SKA3Q8IX90 AC090625.1-201ENST00000357130 210 ntBASIC0.25□□□□□ -2.37
SKA3Q8IX90 MIR103A1-201ENST00000362165 78 ntBASIC0.25□□□□□ -2.37
SKA3Q8IX90 Y_RNA.412-201ENST00000384001 104 ntBASIC0.25□□□□□ -2.37
SKA3Q8IX90 RNY1P6-201ENST00000384193 109 ntBASIC0.25□□□□□ -2.37
SKA3Q8IX90 Y_RNA.515-201ENST00000384535 112 ntBASIC0.25□□□□□ -2.37
SKA3Q8IX90 MIR598-201ENST00000384868 97 ntBASIC0.25□□□□□ -2.37
SKA3Q8IX90 MIR568-201ENST00000385036 95 ntBASIC0.25□□□□□ -2.37
SKA3Q8IX90 MIR6082-201ENST00000613604 109 ntBASIC0.25□□□□□ -2.37
SKA3Q8IX90 Y_RNA.60-201ENST00000362831 98 ntBASIC0.24□□□□□ -2.37
SKA3Q8IX90 SNORA25.7-201ENST00000364375 127 ntBASIC0.24□□□□□ -2.37
Retrieved 100 of 98,524 protein–RNA pairs in 219.4 ms