Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 MIR548H5-201ENST00000580314 60 ntBASIC-0.78□□□□□ -2.53
CCDC88AQ3V6T2 MIR4436A-201ENST00000585278 85 ntBASIC-0.78□□□□□ -2.53
CCDC88AQ3V6T2 U4.5-201ENST00000617137 123 ntBASIC-0.78□□□□□ -2.53
CCDC88AQ3V6T2 RNU6-397P-201ENST00000516226 104 ntBASIC-0.78□□□□□ -2.53
CCDC88AQ3V6T2 AC011476.5-201ENST00000615594 130 ntBASIC-0.78□□□□□ -2.53
CCDC88AQ3V6T2 AC138305.3-201ENST00000624988 240 ntBASIC-0.78□□□□□ -2.53
CCDC88AQ3V6T2 RNU4-84P-201ENST00000364200 139 ntBASIC-0.79□□□□□ -2.54
CCDC88AQ3V6T2 SNORA20-201ENST00000384662 132 ntBASIC-0.79□□□□□ -2.54
CCDC88AQ3V6T2 MT-TT-201ENST00000387460 66 ntBASIC-0.79□□□□□ -2.54
CCDC88AQ3V6T2 Y_RNA.653-201ENST00000459091 95 ntBASIC-0.79□□□□□ -2.54
CCDC88AQ3V6T2 RNU7-79P-201ENST00000516082 62 ntBASIC-0.79□□□□□ -2.54
CCDC88AQ3V6T2 AL365205.2-201ENST00000594586 68 ntBASIC-0.79□□□□□ -2.54
CCDC88AQ3V6T2 AC025253.1-201ENST00000613623 543 ntBASIC-0.79□□□□□ -2.54
CCDC88AQ3V6T2 AC105081.1-201ENST00000617727 106 ntBASIC-0.79□□□□□ -2.54
CCDC88AQ3V6T2 MIR365A-201ENST00000362260 87 ntBASIC-0.8□□□□□ -2.54
CCDC88AQ3V6T2 RNU6-708P-201ENST00000384217 107 ntBASIC-0.8□□□□□ -2.54
CCDC88AQ3V6T2 RNU7-74P-201ENST00000459104 62 ntBASIC-0.8□□□□□ -2.54
CCDC88AQ3V6T2 ATP1B3-AS1-201ENST00000492725 376 ntTSL 5 BASIC-0.8□□□□□ -2.54
CCDC88AQ3V6T2 HOTAIRM1_4.1-201ENST00000617934 102 ntBASIC-0.8□□□□□ -2.54
CCDC88AQ3V6T2 RNU6-291P-201ENST00000384720 107 ntBASIC-0.8□□□□□ -2.54
CCDC88AQ3V6T2 MIR628-201ENST00000385229 95 ntBASIC-0.8□□□□□ -2.54
CCDC88AQ3V6T2 AL035258.1-201ENST00000439450 439 ntTSL 3 BASIC-0.8□□□□□ -2.54
CCDC88AQ3V6T2 AL359636.3-201ENST00000439471 301 ntTSL 2 BASIC-0.8□□□□□ -2.54
CCDC88AQ3V6T2 MRPS35P2-201ENST00000508242 191 ntBASIC-0.8□□□□□ -2.54
CCDC88AQ3V6T2 AC024909.2-201ENST00000553035 286 ntBASIC-0.8□□□□□ -2.54
CCDC88AQ3V6T2 MIR4324-201ENST00000584846 72 ntBASIC-0.8□□□□□ -2.54
CCDC88AQ3V6T2 MIR6507-201ENST00000613630 70 ntBASIC-0.8□□□□□ -2.54
CCDC88AQ3V6T2 Y_RNA.88-201ENST00000363029 99 ntBASIC-0.81□□□□□ -2.54
CCDC88AQ3V6T2 SNORD114-10-201ENST00000363409 72 ntBASIC-0.81□□□□□ -2.54
CCDC88AQ3V6T2 SNORA18-201ENST00000384416 132 ntBASIC-0.81□□□□□ -2.54
CCDC88AQ3V6T2 MIR181B2-201ENST00000385004 89 ntBASIC-0.81□□□□□ -2.54
CCDC88AQ3V6T2 Y_RNA.605-201ENST00000410577 105 ntBASIC-0.81□□□□□ -2.54
CCDC88AQ3V6T2 RNU2-16P-201ENST00000410712 136 ntBASIC-0.81□□□□□ -2.54
CCDC88AQ3V6T2 RNU6-1190P-201ENST00000410811 104 ntBASIC-0.81□□□□□ -2.54
CCDC88AQ3V6T2 AC023051.1-201ENST00000414098 876 ntTSL 5 BASIC-0.81□□□□□ -2.54
CCDC88AQ3V6T2 MTND1P29-201ENST00000448112 647 ntBASIC-0.81□□□□□ -2.54
CCDC88AQ3V6T2 MIR20A-201ENST00000362279 71 ntBASIC-0.82□□□□□ -2.54
CCDC88AQ3V6T2 Y_RNA.14-201ENST00000362415 103 ntBASIC-0.82□□□□□ -2.54
CCDC88AQ3V6T2 SNORA63.5-201ENST00000363548 123 ntBASIC-0.82□□□□□ -2.54
CCDC88AQ3V6T2 Y_RNA.515-201ENST00000384535 112 ntBASIC-0.82□□□□□ -2.54
CCDC88AQ3V6T2 RNU7-110P-201ENST00000516891 62 ntBASIC-0.82□□□□□ -2.54
CCDC88AQ3V6T2 MIR4752-201ENST00000579672 72 ntBASIC-0.82□□□□□ -2.54
CCDC88AQ3V6T2 AL669831.3-213ENST00000636676 183 ntBASIC-0.82□□□□□ -2.54
CCDC88AQ3V6T2 RNU6-1205P-201ENST00000363625 106 ntBASIC-0.82□□□□□ -2.54
CCDC88AQ3V6T2 RNU6-865P-201ENST00000364772 107 ntBASIC-0.82□□□□□ -2.54
CCDC88AQ3V6T2 SNORD114-29-201ENST00000364819 70 ntBASIC-0.82□□□□□ -2.54
CCDC88AQ3V6T2 Y_RNA.299-201ENST00000364973 94 ntBASIC-0.82□□□□□ -2.54
CCDC88AQ3V6T2 Y_RNA.439-201ENST00000384119 94 ntBASIC-0.82□□□□□ -2.54
CCDC88AQ3V6T2 SNORA72.6-201ENST00000384520 129 ntBASIC-0.82□□□□□ -2.54
CCDC88AQ3V6T2 TRAJ51-201ENST00000504127 63 ntBASIC-0.82□□□□□ -2.54
CCDC88AQ3V6T2 MIR3165-201ENST00000579874 75 ntBASIC-0.82□□□□□ -2.54
CCDC88AQ3V6T2 AL670379.3-201ENST00000605040 251 ntBASIC-0.82□□□□□ -2.54
CCDC88AQ3V6T2 CYP19A1-220ENST00000613097 123 ntTSL 5 BASIC-0.82□□□□□ -2.54
CCDC88AQ3V6T2 RNU4-90P-201ENST00000362773 141 ntBASIC-0.83□□□□□ -2.54
CCDC88AQ3V6T2 Y_RNA.428-201ENST00000384078 102 ntBASIC-0.83□□□□□ -2.54
CCDC88AQ3V6T2 RNU6-763P-201ENST00000390865 106 ntBASIC-0.83□□□□□ -2.54
CCDC88AQ3V6T2 RNU6-1321P-201ENST00000390905 107 ntBASIC-0.83□□□□□ -2.54
CCDC88AQ3V6T2 RNA5SP153-201ENST00000516498 76 ntBASIC-0.83□□□□□ -2.54
CCDC88AQ3V6T2 RNU2-31P-201ENST00000516954 155 ntBASIC-0.83□□□□□ -2.54
CCDC88AQ3V6T2 RNU7-4P-201ENST00000516961 62 ntBASIC-0.83□□□□□ -2.54
CCDC88AQ3V6T2 C8orf59P2-201ENST00000603441 271 ntBASIC-0.83□□□□□ -2.54
CCDC88AQ3V6T2 Y_RNA.288-201ENST00000364854 92 ntBASIC-0.84□□□□□ -2.54
CCDC88AQ3V6T2 Y_RNA.424-201ENST00000384063 103 ntBASIC-0.84□□□□□ -2.54
CCDC88AQ3V6T2 Y_RNA.555-201ENST00000384673 110 ntBASIC-0.84□□□□□ -2.54
CCDC88AQ3V6T2 RNU6-21P-201ENST00000384710 107 ntBASIC-0.84□□□□□ -2.54
CCDC88AQ3V6T2 MIR1285-2-201ENST00000408311 88 ntBASIC-0.84□□□□□ -2.54
CCDC88AQ3V6T2 AC093726.3-201ENST00000637588 150 ntBASIC-0.84□□□□□ -2.54
CCDC88AQ3V6T2 RNU6-490P-201ENST00000362985 107 ntBASIC-0.84□□□□□ -2.54
CCDC88AQ3V6T2 Y_RNA.366-201ENST00000365540 102 ntBASIC-0.84□□□□□ -2.54
CCDC88AQ3V6T2 Y_RNA.413-201ENST00000384007 102 ntBASIC-0.84□□□□□ -2.54
CCDC88AQ3V6T2 Y_RNA.559-201ENST00000384686 107 ntBASIC-0.84□□□□□ -2.54
CCDC88AQ3V6T2 MTATP6P26-201ENST00000445926 662 ntBASIC-0.84□□□□□ -2.54
CCDC88AQ3V6T2 Y_RNA.754-201ENST00000476024 102 ntBASIC-0.84□□□□□ -2.54
CCDC88AQ3V6T2 RN7SKP19-201ENST00000516016 252 ntBASIC-0.84□□□□□ -2.54
CCDC88AQ3V6T2 SNORD36C-201ENST00000516733 66 ntBASIC-0.84□□□□□ -2.54
CCDC88AQ3V6T2 AC007012.1-201ENST00000567192 175 ntBASIC-0.84□□□□□ -2.54
CCDC88AQ3V6T2 SNORD58B-201ENST00000607313 66 ntBASIC-0.84□□□□□ -2.54
CCDC88AQ3V6T2 AC011603.4-201ENST00000611325 277 ntBASIC-0.84□□□□□ -2.54
CCDC88AQ3V6T2 Y_RNA.790-201ENST00000614282 102 ntBASIC-0.84□□□□□ -2.54
CCDC88AQ3V6T2 Y_RNA.782-201ENST00000614695 102 ntBASIC-0.84□□□□□ -2.54
CCDC88AQ3V6T2 U4.2-201ENST00000618561 85 ntBASIC-0.84□□□□□ -2.54
CCDC88AQ3V6T2 AC108866.1-201ENST00000503073 2339 ntTSL 5 BASIC-0.85□□□□□ -2.54
CCDC88AQ3V6T2 Y_RNA.143-201ENST00000363520 106 ntBASIC-0.85□□□□□ -2.55
CCDC88AQ3V6T2 Y_RNA.181-201ENST00000363872 101 ntBASIC-0.85□□□□□ -2.55
CCDC88AQ3V6T2 Y_RNA.357-201ENST00000365487 109 ntBASIC-0.85□□□□□ -2.55
CCDC88AQ3V6T2 Y_RNA.554-201ENST00000384672 102 ntBASIC-0.85□□□□□ -2.55
CCDC88AQ3V6T2 RNU4-14P-201ENST00000410858 122 ntBASIC-0.85□□□□□ -2.55
CCDC88AQ3V6T2 AC006210.1-201ENST00000424882 111 ntBASIC-0.85□□□□□ -2.55
CCDC88AQ3V6T2 SNRPGP8-201ENST00000454064 226 ntBASIC-0.85□□□□□ -2.55
CCDC88AQ3V6T2 RNU6-120P-201ENST00000516077 103 ntBASIC-0.85□□□□□ -2.55
CCDC88AQ3V6T2 RNU6-699P-201ENST00000517081 110 ntBASIC-0.85□□□□□ -2.55
CCDC88AQ3V6T2 MIR378F-201ENST00000578143 78 ntBASIC-0.85□□□□□ -2.55
CCDC88AQ3V6T2 MIR4423-201ENST00000580922 80 ntBASIC-0.85□□□□□ -2.55
CCDC88AQ3V6T2 SNORA25.7-201ENST00000364375 127 ntBASIC-0.86□□□□□ -2.55
CCDC88AQ3V6T2 RNU6-1062P-201ENST00000383908 107 ntBASIC-0.86□□□□□ -2.55
CCDC88AQ3V6T2 Y_RNA.454-201ENST00000384224 113 ntBASIC-0.86□□□□□ -2.55
CCDC88AQ3V6T2 Y_RNA.599-201ENST00000410489 109 ntBASIC-0.86□□□□□ -2.55
CCDC88AQ3V6T2 Y_RNA.646-201ENST00000410980 101 ntBASIC-0.86□□□□□ -2.55
CCDC88AQ3V6T2 AC097635.1-201ENST00000450678 155 ntBASIC-0.86□□□□□ -2.55
CCDC88AQ3V6T2 HSPE1P25-201ENST00000455484 251 ntBASIC-0.86□□□□□ -2.55
Retrieved 100 of 98,524 protein–RNA pairs in 174.8 ms