Protein–RNA interactions for Protein: Q15465

SHH, Sonic hedgehog protein, humanhuman

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHHQ15465 RNU6-1212P-201ENST00000517023 104 ntBASIC0.75□□□□□ -2.29
SHHQ15465 SNORA70.22-201ENST00000517160 124 ntBASIC0.75□□□□□ -2.29
SHHQ15465 AC010177.1-201ENST00000547819 366 ntTSL 3 BASIC0.75□□□□□ -2.29
SHHQ15465 MIR5197-201ENST00000583721 112 ntBASIC0.75□□□□□ -2.29
SHHQ15465 DNAJC19P2-201ENST00000593340 302 ntBASIC0.75□□□□□ -2.29
SHHQ15465 AL365205.2-201ENST00000594586 68 ntBASIC0.75□□□□□ -2.29
SHHQ15465 MIR4791-201ENST00000607666 84 ntBASIC0.75□□□□□ -2.29
SHHQ15465 LEKR1-212ENST00000640869 237 ntTSL 5 BASIC0.75□□□□□ -2.29
SHHQ15465 AL596211.1-201ENST00000569873 2277 ntBASIC0.75□□□□□ -2.29
SHHQ15465 RNU1-36P-201ENST00000365130 165 ntBASIC0.74□□□□□ -2.29
SHHQ15465 SNORA2.2-201ENST00000365473 135 ntBASIC0.74□□□□□ -2.29
SHHQ15465 RNU6-1189P-201ENST00000383958 107 ntBASIC0.74□□□□□ -2.29
SHHQ15465 Y_RNA.400-201ENST00000383963 111 ntBASIC0.74□□□□□ -2.29
SHHQ15465 SNORD38C-201ENST00000384381 69 ntBASIC0.74□□□□□ -2.29
SHHQ15465 MIR520C-201ENST00000385005 87 ntBASIC0.74□□□□□ -2.29
SHHQ15465 TRAJ2-201ENST00000390535 66 ntAPPRIS P1 BASIC0.74□□□□□ -2.29
SHHQ15465 SNORA75.2-201ENST00000391138 150 ntBASIC0.74□□□□□ -2.29
SHHQ15465 SNORA75.3-201ENST00000391231 150 ntBASIC0.74□□□□□ -2.29
SHHQ15465 MTND4LP9-201ENST00000427694 174 ntBASIC0.74□□□□□ -2.29
SHHQ15465 RNU7-107P-201ENST00000459121 61 ntBASIC0.74□□□□□ -2.29
SHHQ15465 RNU6-830P-201ENST00000516353 107 ntBASIC0.74□□□□□ -2.29
SHHQ15465 RNU6-971P-201ENST00000516920 106 ntBASIC0.74□□□□□ -2.29
SHHQ15465 AC022523.2-201ENST00000561045 150 ntBASIC0.74□□□□□ -2.29
SHHQ15465 PRELID3BP2-201ENST00000605362 201 ntBASIC0.74□□□□□ -2.29
SHHQ15465 AC091932.4-201ENST00000623386 200 ntBASIC0.74□□□□□ -2.29
SHHQ15465 Y_RNA.171-201ENST00000363760 102 ntBASIC0.73□□□□□ -2.29
SHHQ15465 RNA5SP499-201ENST00000363982 119 ntBASIC0.73□□□□□ -2.29
SHHQ15465 RNU6-915P-201ENST00000364943 103 ntBASIC0.73□□□□□ -2.29
SHHQ15465 Y_RNA.337-201ENST00000365312 102 ntBASIC0.73□□□□□ -2.29
SHHQ15465 Y_RNA.370-201ENST00000365589 108 ntBASIC0.73□□□□□ -2.29
SHHQ15465 SNORA27-201ENST00000384323 126 ntBASIC0.73□□□□□ -2.29
SHHQ15465 RNU6-1104P-201ENST00000384723 104 ntBASIC0.73□□□□□ -2.29
SHHQ15465 MIR200A-201ENST00000384875 90 ntBASIC0.73□□□□□ -2.29
SHHQ15465 MIR146A-201ENST00000385201 99 ntBASIC0.73□□□□□ -2.29
SHHQ15465 SNORA26.6-201ENST00000391256 115 ntBASIC0.73□□□□□ -2.29
SHHQ15465 AL603914.1-201ENST00000401964 204 ntBASIC0.73□□□□□ -2.29
SHHQ15465 Y_RNA.630-201ENST00000411370 108 ntBASIC0.73□□□□□ -2.29
SHHQ15465 AC092628.1-201ENST00000436250 252 ntBASIC0.73□□□□□ -2.29
SHHQ15465 AC023449.1-201ENST00000454464 154 ntBASIC0.73□□□□□ -2.29
SHHQ15465 RNU2-11P-201ENST00000459191 187 ntBASIC0.73□□□□□ -2.29
SHHQ15465 RNU6-781P-201ENST00000516377 101 ntBASIC0.73□□□□□ -2.29
SHHQ15465 AP003716.2-201ENST00000528260 108 ntBASIC0.73□□□□□ -2.29
SHHQ15465 AC087685.1-201ENST00000587507 141 ntBASIC0.73□□□□□ -2.29
SHHQ15465 AC013244.2-201ENST00000603396 103 ntBASIC0.73□□□□□ -2.29
SHHQ15465 AL357312.1-201ENST00000603879 298 ntBASIC0.73□□□□□ -2.29
SHHQ15465 AC243994.1-201ENST00000618627 109 ntBASIC0.73□□□□□ -2.29
SHHQ15465 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC0.73□□□□□ -2.29
SHHQ15465 Y_RNA.218-201ENST00000364218 104 ntBASIC0.72□□□□□ -2.29
SHHQ15465 Y_RNA.351-201ENST00000365436 96 ntBASIC0.72□□□□□ -2.29
SHHQ15465 Y_RNA.366-201ENST00000365540 102 ntBASIC0.72□□□□□ -2.29
SHHQ15465 Y_RNA.568-201ENST00000384742 113 ntBASIC0.72□□□□□ -2.29
SHHQ15465 MIR624-201ENST00000385217 97 ntBASIC0.72□□□□□ -2.29
SHHQ15465 SNORD12C-201ENST00000386307 89 ntBASIC0.72□□□□□ -2.29
SHHQ15465 SNORA75.5-201ENST00000391291 81 ntBASIC0.72□□□□□ -2.29
SHHQ15465 SNORA79-201ENST00000408376 140 ntBASIC0.72□□□□□ -2.29
SHHQ15465 RNU6ATAC8P-201ENST00000408460 126 ntBASIC0.72□□□□□ -2.29
SHHQ15465 RNU6-735P-201ENST00000410612 107 ntBASIC0.72□□□□□ -2.29
SHHQ15465 AC244023.1-201ENST00000426884 112 ntBASIC0.72□□□□□ -2.29
SHHQ15465 HMGN2P32-201ENST00000444648 269 ntBASIC0.72□□□□□ -2.29
SHHQ15465 MIR1270-201ENST00000459320 83 ntBASIC0.72□□□□□ -2.29
SHHQ15465 SNORA31.2-201ENST00000516019 134 ntBASIC0.72□□□□□ -2.29
SHHQ15465 RNU6-240P-201ENST00000516098 97 ntBASIC0.72□□□□□ -2.29
SHHQ15465 RNU2-35P-201ENST00000516446 142 ntBASIC0.72□□□□□ -2.29
SHHQ15465 MIR4662B-201ENST00000579498 81 ntBASIC0.72□□□□□ -2.29
SHHQ15465 MIR548X2-201ENST00000579776 100 ntBASIC0.72□□□□□ -2.29
SHHQ15465 AC242498.1-201ENST00000604134 111 ntBASIC0.72□□□□□ -2.29
SHHQ15465 AC134878.1-201ENST00000619901 243 ntBASIC0.72□□□□□ -2.29
SHHQ15465 SLC8A1-AS1-230ENST00000627538 212 ntTSL 5 BASIC0.72□□□□□ -2.29
SHHQ15465 MIR6516-201ENST00000630554 81 ntBASIC0.72□□□□□ -2.29
SHHQ15465 RNU6-349P-201ENST00000362402 107 ntBASIC0.71□□□□□ -2.3
SHHQ15465 SNORA25.7-201ENST00000364375 127 ntBASIC0.71□□□□□ -2.3
SHHQ15465 Y_RNA.261-201ENST00000364631 102 ntBASIC0.71□□□□□ -2.3
SHHQ15465 Y_RNA.488-201ENST00000384403 102 ntBASIC0.71□□□□□ -2.3
SHHQ15465 RNU6-205P-201ENST00000390858 107 ntBASIC0.71□□□□□ -2.3
SHHQ15465 Y_RNA.586-201ENST00000391146 98 ntBASIC0.71□□□□□ -2.3
SHHQ15465 AL451046.2-201ENST00000403074 277 ntBASIC0.71□□□□□ -2.3
SHHQ15465 AC063976.4-201ENST00000421971 163 ntBASIC0.71□□□□□ -2.3
SHHQ15465 AL512326.2-201ENST00000426359 151 ntBASIC0.71□□□□□ -2.3
SHHQ15465 RNU7-67P-201ENST00000459003 62 ntBASIC0.71□□□□□ -2.3
SHHQ15465 RPS29P24-201ENST00000486345 171 ntBASIC0.71□□□□□ -2.3
SHHQ15465 RNU6-998P-201ENST00000515894 101 ntBASIC0.71□□□□□ -2.3
SHHQ15465 Y_RNA.690-201ENST00000516603 95 ntBASIC0.71□□□□□ -2.3
SHHQ15465 AC090155.2-201ENST00000518854 267 ntTSL 3 BASIC0.71□□□□□ -2.3
SHHQ15465 MIR4653-201ENST00000585107 83 ntBASIC0.71□□□□□ -2.3
SHHQ15465 MIR4251-201ENST00000635819 61 ntBASIC0.71□□□□□ -2.3
SHHQ15465 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC0.71□□□□□ -2.3
SHHQ15465 AC010332.2-201ENST00000613083 1904 ntBASIC0.7□□□□□ -2.3
SHHQ15465 SNORD115-34-201ENST00000362441 82 ntBASIC0.7□□□□□ -2.3
SHHQ15465 SNORD115-12-201ENST00000362583 82 ntBASIC0.7□□□□□ -2.3
SHHQ15465 SNORD115-29-201ENST00000362834 82 ntBASIC0.7□□□□□ -2.3
SHHQ15465 SNORD115-9-201ENST00000362912 82 ntBASIC0.7□□□□□ -2.3
SHHQ15465 SNORD115-21-201ENST00000362963 81 ntBASIC0.7□□□□□ -2.3
SHHQ15465 SNORD115-14-201ENST00000363090 81 ntBASIC0.7□□□□□ -2.3
SHHQ15465 SNORD115-13-201ENST00000363358 82 ntBASIC0.7□□□□□ -2.3
SHHQ15465 SNORD115-41-201ENST00000363608 82 ntBASIC0.7□□□□□ -2.3
SHHQ15465 SNORD115-11-201ENST00000363616 82 ntBASIC0.7□□□□□ -2.3
SHHQ15465 SNORD115-5-201ENST00000363633 82 ntBASIC0.7□□□□□ -2.3
SHHQ15465 SNORD115-39-201ENST00000363694 82 ntBASIC0.7□□□□□ -2.3
SHHQ15465 SNORD115-4-201ENST00000363810 82 ntBASIC0.7□□□□□ -2.3
SHHQ15465 SNORD115-16-201ENST00000363887 82 ntBASIC0.7□□□□□ -2.3
Retrieved 100 of 98,524 protein–RNA pairs in 105.5 ms