Protein–RNA interactions for Protein: Q01955

COL4A3, Collagen alpha-3(IV) chain, humanhuman

Predictions only

Length 1,670 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3Q01955 Y_RNA.10-201ENST00000362371 110 ntBASIC1.8□□□□□ -2.12
COL4A3Q01955 SNORD115-19-201ENST00000363098 82 ntBASIC1.8□□□□□ -2.12
COL4A3Q01955 SNORD115-18-201ENST00000363293 82 ntBASIC1.8□□□□□ -2.12
COL4A3Q01955 RNU4-67P-201ENST00000364569 141 ntBASIC1.8□□□□□ -2.12
COL4A3Q01955 SNORD115-17-201ENST00000364612 82 ntBASIC1.8□□□□□ -2.12
COL4A3Q01955 MIR605-201ENST00000385078 83 ntBASIC1.8□□□□□ -2.12
COL4A3Q01955 AL513534.2-201ENST00000603836 250 ntBASIC1.8□□□□□ -2.12
COL4A3Q01955 Y_RNA.360-201ENST00000365512 102 ntBASIC1.8□□□□□ -2.12
COL4A3Q01955 MIR488-201ENST00000365739 83 ntBASIC1.8□□□□□ -2.12
COL4A3Q01955 MIR526A1-201ENST00000384897 85 ntBASIC1.8□□□□□ -2.12
COL4A3Q01955 SNORA26.2-201ENST00000390922 122 ntBASIC1.8□□□□□ -2.12
COL4A3Q01955 SNORD28B-201ENST00000390993 75 ntBASIC1.8□□□□□ -2.12
COL4A3Q01955 SNORA26.6-201ENST00000391256 115 ntBASIC1.8□□□□□ -2.12
COL4A3Q01955 RNU1-40P-201ENST00000516816 164 ntBASIC1.8□□□□□ -2.12
COL4A3Q01955 RNU1-97P-201ENST00000516872 164 ntBASIC1.8□□□□□ -2.12
COL4A3Q01955 RNU6-1223P-201ENST00000517124 104 ntBASIC1.8□□□□□ -2.12
COL4A3Q01955 AL442128.1-201ENST00000615151 90 ntBASIC1.8□□□□□ -2.12
COL4A3Q01955 MIR6717-201ENST00000622747 73 ntBASIC1.8□□□□□ -2.12
COL4A3Q01955 SNORA22.1-201ENST00000362701 134 ntBASIC1.79□□□□□ -2.12
COL4A3Q01955 Y_RNA.430-201ENST00000384081 110 ntBASIC1.79□□□□□ -2.12
COL4A3Q01955 Y_RNA.470-201ENST00000384307 117 ntBASIC1.79□□□□□ -2.12
COL4A3Q01955 Y_RNA.558-201ENST00000384685 113 ntBASIC1.79□□□□□ -2.12
COL4A3Q01955 MIR577-201ENST00000385196 96 ntBASIC1.79□□□□□ -2.12
COL4A3Q01955 RNU6-158P-201ENST00000517104 100 ntBASIC1.79□□□□□ -2.12
COL4A3Q01955 RNU6-844P-201ENST00000517175 102 ntBASIC1.79□□□□□ -2.12
COL4A3Q01955 MIR4446-201ENST00000578505 67 ntBASIC1.79□□□□□ -2.12
COL4A3Q01955 MIR8055-201ENST00000610739 97 ntBASIC1.79□□□□□ -2.12
COL4A3Q01955 MIR6895-201ENST00000613497 78 ntBASIC1.79□□□□□ -2.12
COL4A3Q01955 MIR203B-201ENST00000636080 86 ntBASIC1.79□□□□□ -2.12
COL4A3Q01955 RNU6-832P-201ENST00000363319 107 ntBASIC1.78□□□□□ -2.12
COL4A3Q01955 RNU6-1018P-201ENST00000516577 106 ntBASIC1.78□□□□□ -2.12
COL4A3Q01955 MIR424-201ENST00000362227 98 ntBASIC1.77□□□□□ -2.13
COL4A3Q01955 Y_RNA.68-201ENST00000362881 102 ntBASIC1.77□□□□□ -2.13
COL4A3Q01955 Y_RNA.107-201ENST00000363190 121 ntBASIC1.77□□□□□ -2.13
COL4A3Q01955 RNY1P7-201ENST00000384743 110 ntBASIC1.77□□□□□ -2.13
COL4A3Q01955 TRAJ49-201ENST00000390488 56 ntAPPRIS P1 BASIC1.77□□□□□ -2.13
COL4A3Q01955 RNA5SP100-201ENST00000410903 110 ntBASIC1.77□□□□□ -2.13
COL4A3Q01955 RNA5SP59-201ENST00000410922 110 ntBASIC1.77□□□□□ -2.13
COL4A3Q01955 RPL23AP6-201ENST00000446637 472 ntBASIC1.77□□□□□ -2.13
COL4A3Q01955 snoU13.16-201ENST00000459350 104 ntBASIC1.77□□□□□ -2.13
COL4A3Q01955 AC099513.1-201ENST00000490423 301 ntBASIC1.77□□□□□ -2.13
COL4A3Q01955 5S_rRNA.3-201ENST00000517021 110 ntBASIC1.77□□□□□ -2.13
COL4A3Q01955 AC024614.2-201ENST00000577584 372 ntBASIC1.77□□□□□ -2.13
COL4A3Q01955 MIR4529-201ENST00000578110 78 ntBASIC1.77□□□□□ -2.13
COL4A3Q01955 AL512598.1-201ENST00000610158 273 ntBASIC1.77□□□□□ -2.13
COL4A3Q01955 5S_rRNA.19-201ENST00000612131 110 ntBASIC1.77□□□□□ -2.13
COL4A3Q01955 5S_rRNA.18-201ENST00000621941 110 ntBASIC1.77□□□□□ -2.13
COL4A3Q01955 SLC8A1-AS1-230ENST00000627538 212 ntTSL 5 BASIC1.77□□□□□ -2.13
COL4A3Q01955 NEB-203ENST00000397345 26202 ntAPPRIS ALT2 TSL 5 BASIC1.77□□□□□ -2.13
COL4A3Q01955 NEB-209ENST00000427231 26202 ntAPPRIS ALT2 TSL 5 BASIC1.77□□□□□ -2.13
COL4A3Q01955 SNORA18-201ENST00000384416 132 ntBASIC1.77□□□□□ -2.13
COL4A3Q01955 RNU6-913P-201ENST00000390913 95 ntBASIC1.77□□□□□ -2.13
COL4A3Q01955 SNORD77B-201ENST00000391112 67 ntBASIC1.77□□□□□ -2.13
COL4A3Q01955 SNORA7.5-201ENST00000410672 110 ntBASIC1.77□□□□□ -2.13
COL4A3Q01955 RNY4P29-201ENST00000410801 97 ntBASIC1.77□□□□□ -2.13
COL4A3Q01955 SNORA74.3-201ENST00000517108 154 ntBASIC1.77□□□□□ -2.13
COL4A3Q01955 SNORA31.25-201ENST00000517242 134 ntBASIC1.77□□□□□ -2.13
COL4A3Q01955 Metazoa_SRP.32-201ENST00000622685 286 ntBASIC1.77□□□□□ -2.13
COL4A3Q01955 AL512310.12-203ENST00000640543 90 ntBASIC1.77□□□□□ -2.13
COL4A3Q01955 KPNA5-202ENST00000368564 11311 ntAPPRIS P1 TSL 1 (best) BASIC1.76□□□□□ -2.13
COL4A3Q01955 MUC15-203ENST00000455601 3156 ntAPPRIS P1 TSL 2 BASIC1.76□□□□□ -2.13
COL4A3Q01955 Y_RNA.388-201ENST00000383919 113 ntBASIC1.76□□□□□ -2.13
COL4A3Q01955 RNU6-521P-201ENST00000516663 105 ntBASIC1.76□□□□□ -2.13
COL4A3Q01955 HMSD-204ENST00000526932 162 ntTSL 3 BASIC1.76□□□□□ -2.13
COL4A3Q01955 MIR4694-201ENST00000578534 80 ntBASIC1.76□□□□□ -2.13
COL4A3Q01955 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC1.76□□□□□ -2.13
COL4A3Q01955 KTN1-205ENST00000395314 4618 ntAPPRIS P4 TSL 1 (best) BASIC1.75□□□□□ -2.13
COL4A3Q01955 RNU6-53P-201ENST00000365367 106 ntBASIC1.75□□□□□ -2.13
COL4A3Q01955 RNU6-616P-201ENST00000384353 107 ntBASIC1.75□□□□□ -2.13
COL4A3Q01955 RNA5SP492-201ENST00000411330 114 ntBASIC1.75□□□□□ -2.13
COL4A3Q01955 RNA5SP82-201ENST00000516707 92 ntBASIC1.75□□□□□ -2.13
COL4A3Q01955 SNORA31.17-201ENST00000516953 127 ntBASIC1.75□□□□□ -2.13
COL4A3Q01955 AL020996.3-201ENST00000606617 222 ntBASIC1.75□□□□□ -2.13
COL4A3Q01955 MALAT1.1-201ENST00000618249 95 ntBASIC1.75□□□□□ -2.13
COL4A3Q01955 hsa-mir-3158-1.1-201ENST00000637571 81 ntBASIC1.75□□□□□ -2.13
COL4A3Q01955 MIR450A2-201ENST00000385022 100 ntBASIC1.74□□□□□ -2.13
COL4A3Q01955 RNA5SP450-201ENST00000411206 102 ntBASIC1.74□□□□□ -2.13
COL4A3Q01955 HAR1A.1-201ENST00000459583 118 ntBASIC1.74□□□□□ -2.13
COL4A3Q01955 RNU7-43P-201ENST00000516554 64 ntBASIC1.74□□□□□ -2.13
COL4A3Q01955 AC026421.1-201ENST00000519101 163 ntBASIC1.74□□□□□ -2.13
COL4A3Q01955 MIR548AE2-201ENST00000583456 67 ntBASIC1.74□□□□□ -2.13
COL4A3Q01955 MIR3935-201ENST00000583472 104 ntBASIC1.74□□□□□ -2.13
COL4A3Q01955 MIR6841-201ENST00000637129 72 ntBASIC1.74□□□□□ -2.13
COL4A3Q01955 THOC2-216ENST00000491737 4452 ntTSL 5 BASIC1.74□□□□□ -2.13
COL4A3Q01955 SNORA3A-201ENST00000364113 130 ntBASIC1.74□□□□□ -2.13
COL4A3Q01955 SNORA1.1-201ENST00000364671 133 ntBASIC1.74□□□□□ -2.13
COL4A3Q01955 SNORD115-35-201ENST00000365122 82 ntBASIC1.74□□□□□ -2.13
COL4A3Q01955 RNU6-820P-201ENST00000384273 107 ntBASIC1.74□□□□□ -2.13
COL4A3Q01955 MIR520C-201ENST00000385005 87 ntBASIC1.74□□□□□ -2.13
COL4A3Q01955 AC073127.1-201ENST00000447336 333 ntTSL 3 BASIC1.74□□□□□ -2.13
COL4A3Q01955 MIR4764-201ENST00000580680 88 ntBASIC1.74□□□□□ -2.13
COL4A3Q01955 SNORD14A-201ENST00000606526 91 ntBASIC1.74□□□□□ -2.13
COL4A3Q01955 MBNL3-212ENST00000538204 11294 ntTSL 1 (best) BASIC1.73□□□□□ -2.13
COL4A3Q01955 UHMK1-204ENST00000545294 8117 ntTSL 2 BASIC1.73□□□□□ -2.13
COL4A3Q01955 MIR96-201ENST00000362288 78 ntBASIC1.73□□□□□ -2.13
COL4A3Q01955 RNU6-203P-201ENST00000384038 104 ntBASIC1.73□□□□□ -2.13
COL4A3Q01955 RNU6-1190P-201ENST00000410811 104 ntBASIC1.73□□□□□ -2.13
COL4A3Q01955 AC245047.7-201ENST00000440265 293 ntBASIC1.73□□□□□ -2.13
COL4A3Q01955 RNU6-795P-201ENST00000516323 103 ntBASIC1.73□□□□□ -2.13
COL4A3Q01955 RNU6-762P-201ENST00000517107 102 ntBASIC1.73□□□□□ -2.13
Retrieved 100 of 98,524 protein–RNA pairs in 284.9 ms