Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 AL592431.2-201ENST00000422198 171 ntTSL 3 BASIC1.04□□□□□ -2.24
COL4A4P53420 JTBP1-201ENST00000441314 247 ntBASIC1.04□□□□□ -2.24
COL4A4P53420 AC087499.4-201ENST00000448505 178 ntBASIC1.04□□□□□ -2.24
COL4A4P53420 RNU2-11P-201ENST00000459191 187 ntBASIC1.04□□□□□ -2.24
COL4A4P53420 AC018868.1-201ENST00000491307 315 ntBASIC1.04□□□□□ -2.24
COL4A4P53420 RNY4P20-201ENST00000516678 93 ntBASIC1.04□□□□□ -2.24
COL4A4P53420 SNORA48.11-201ENST00000517015 89 ntBASIC1.04□□□□□ -2.24
COL4A4P53420 AP003484.1-201ENST00000530974 250 ntBASIC1.04□□□□□ -2.24
COL4A4P53420 DEFB131E-201ENST00000532329 154 ntBASIC1.04□□□□□ -2.24
COL4A4P53420 MIR4305-201ENST00000583252 102 ntBASIC1.04□□□□□ -2.24
COL4A4P53420 HSPE1P19-201ENST00000603327 295 ntBASIC1.04□□□□□ -2.24
COL4A4P53420 uc_338.28-201ENST00000612082 187 ntBASIC1.04□□□□□ -2.24
COL4A4P53420 Y_RNA.818-201ENST00000618813 71 ntBASIC1.04□□□□□ -2.24
COL4A4P53420 AL162726.3-218ENST00000636401 95 ntBASIC1.04□□□□□ -2.24
COL4A4P53420 MIR302B-201ENST00000362188 73 ntBASIC1.04□□□□□ -2.24
COL4A4P53420 MIR342-201ENST00000362212 99 ntBASIC1.04□□□□□ -2.24
COL4A4P53420 Y_RNA.99-201ENST00000363138 105 ntBASIC1.04□□□□□ -2.24
COL4A4P53420 Y_RNA.163-201ENST00000363702 113 ntBASIC1.04□□□□□ -2.24
COL4A4P53420 SNORA3A-201ENST00000364113 130 ntBASIC1.04□□□□□ -2.24
COL4A4P53420 RNU6-1019P-201ENST00000364424 107 ntBASIC1.04□□□□□ -2.24
COL4A4P53420 SNORD24-201ENST00000383884 75 ntBASIC1.04□□□□□ -2.24
COL4A4P53420 RNU6-1152P-201ENST00000384576 107 ntBASIC1.04□□□□□ -2.24
COL4A4P53420 Y_RNA.544-201ENST00000384650 113 ntBASIC1.04□□□□□ -2.24
COL4A4P53420 MIR590-201ENST00000385008 97 ntBASIC1.04□□□□□ -2.24
COL4A4P53420 CALM2P4-201ENST00000430810 426 ntBASIC1.04□□□□□ -2.24
COL4A4P53420 AC023141.11-201ENST00000508864 202 ntBASIC1.04□□□□□ -2.24
COL4A4P53420 SNORD45.4-201ENST00000516629 73 ntBASIC1.04□□□□□ -2.24
COL4A4P53420 RNU7-28P-201ENST00000516759 62 ntBASIC1.04□□□□□ -2.24
COL4A4P53420 RNU6-1149P-201ENST00000516810 97 ntBASIC1.04□□□□□ -2.24
COL4A4P53420 MIR6513-201ENST00000621188 64 ntBASIC1.04□□□□□ -2.24
COL4A4P53420 AC091932.4-201ENST00000623386 200 ntBASIC1.04□□□□□ -2.24
COL4A4P53420 LRRIQ1-202ENST00000393217 5394 ntAPPRIS P1 TSL 1 (best) BASIC1.03□□□□□ -2.24
COL4A4P53420 HIF1A-212ENST00000557538 3468 ntTSL 1 (best) BASIC1.03□□□□□ -2.24
COL4A4P53420 MIRLET7C-201ENST00000362160 84 ntBASIC1.03□□□□□ -2.24
COL4A4P53420 Y_RNA.93-201ENST00000363066 109 ntBASIC1.03□□□□□ -2.24
COL4A4P53420 Y_RNA.213-201ENST00000364178 111 ntBASIC1.03□□□□□ -2.24
COL4A4P53420 Y_RNA.298-201ENST00000364960 107 ntBASIC1.03□□□□□ -2.24
COL4A4P53420 SNORA27-201ENST00000384323 126 ntBASIC1.03□□□□□ -2.24
COL4A4P53420 Y_RNA.507-201ENST00000384500 99 ntBASIC1.03□□□□□ -2.24
COL4A4P53420 MIR577-201ENST00000385196 96 ntBASIC1.03□□□□□ -2.24
COL4A4P53420 TRDJ3-201ENST00000390476 59 ntAPPRIS P1 BASIC1.03□□□□□ -2.24
COL4A4P53420 MIR1197-201ENST00000408818 88 ntBASIC1.03□□□□□ -2.24
COL4A4P53420 RNU2-63P-201ENST00000410792 194 ntBASIC1.03□□□□□ -2.24
COL4A4P53420 MIR3152-201ENST00000579801 74 ntBASIC1.03□□□□□ -2.24
COL4A4P53420 MIR5197-201ENST00000583721 112 ntBASIC1.03□□□□□ -2.24
COL4A4P53420 AC087685.1-201ENST00000587507 141 ntBASIC1.03□□□□□ -2.24
COL4A4P53420 AL096840.1-201ENST00000603287 93 ntBASIC1.03□□□□□ -2.24
COL4A4P53420 AC087741.2-201ENST00000619415 172 ntBASIC1.03□□□□□ -2.24
COL4A4P53420 MIR8054-201ENST00000620877 86 ntBASIC1.03□□□□□ -2.24
COL4A4P53420 CHST9-202ENST00000581714 2043 ntAPPRIS P1 TSL 1 (best) BASIC1.02□□□□□ -2.25
COL4A4P53420 RNU1-58P-201ENST00000362413 163 ntBASIC1.02□□□□□ -2.25
COL4A4P53420 Y_RNA.220-201ENST00000364244 109 ntBASIC1.02□□□□□ -2.25
COL4A4P53420 RNU4-36P-201ENST00000364294 144 ntBASIC1.02□□□□□ -2.25
COL4A4P53420 Y_RNA.265-201ENST00000364677 108 ntBASIC1.02□□□□□ -2.25
COL4A4P53420 Y_RNA.531-201ENST00000384589 121 ntBASIC1.02□□□□□ -2.25
COL4A4P53420 Y_RNA.558-201ENST00000384685 113 ntBASIC1.02□□□□□ -2.25
COL4A4P53420 SNORA19.1-201ENST00000410656 129 ntBASIC1.02□□□□□ -2.25
COL4A4P53420 RNU6-938P-201ENST00000411285 103 ntBASIC1.02□□□□□ -2.25
COL4A4P53420 CST2P1-201ENST00000425770 87 ntBASIC1.02□□□□□ -2.25
COL4A4P53420 RNU7-164P-201ENST00000459221 62 ntBASIC1.02□□□□□ -2.25
COL4A4P53420 AC107297.1-201ENST00000459991 176 ntBASIC1.02□□□□□ -2.25
COL4A4P53420 RNU2-35P-201ENST00000516446 142 ntBASIC1.02□□□□□ -2.25
COL4A4P53420 Y_RNA.685-201ENST00000516532 108 ntBASIC1.02□□□□□ -2.25
COL4A4P53420 RNU7-25P-201ENST00000516544 62 ntBASIC1.02□□□□□ -2.25
COL4A4P53420 AC009930.1-201ENST00000522330 191 ntTSL 5 BASIC1.02□□□□□ -2.25
COL4A4P53420 AC026271.5-201ENST00000577873 130 ntBASIC1.02□□□□□ -2.25
COL4A4P53420 MIR3169-201ENST00000578032 83 ntBASIC1.02□□□□□ -2.25
COL4A4P53420 Y_RNA.773-201ENST00000607168 90 ntBASIC1.02□□□□□ -2.25
COL4A4P53420 MIR6079-201ENST00000635807 62 ntBASIC1.02□□□□□ -2.25
COL4A4P53420 Y_RNA.190-201ENST00000363964 101 ntBASIC1.01□□□□□ -2.25
COL4A4P53420 Y_RNA.360-201ENST00000365512 102 ntBASIC1.01□□□□□ -2.25
COL4A4P53420 MIR515-2-201ENST00000384883 83 ntBASIC1.01□□□□□ -2.25
COL4A4P53420 MIR515-1-201ENST00000384884 83 ntBASIC1.01□□□□□ -2.25
COL4A4P53420 MIR518F-201ENST00000384973 87 ntBASIC1.01□□□□□ -2.25
COL4A4P53420 MIR605-201ENST00000385078 83 ntBASIC1.01□□□□□ -2.25
COL4A4P53420 TRAJ11-201ENST00000390526 60 ntAPPRIS P1 BASIC1.01□□□□□ -2.25
COL4A4P53420 RNU6-1275P-201ENST00000391087 107 ntBASIC1.01□□□□□ -2.25
COL4A4P53420 RNU11-3P-201ENST00000391111 133 ntBASIC1.01□□□□□ -2.25
COL4A4P53420 U8.17-201ENST00000391292 132 ntBASIC1.01□□□□□ -2.25
COL4A4P53420 AL512326.2-201ENST00000426359 151 ntBASIC1.01□□□□□ -2.25
COL4A4P53420 RNU6-970P-201ENST00000516312 107 ntBASIC1.01□□□□□ -2.25
COL4A4P53420 AC026421.1-201ENST00000519101 163 ntBASIC1.01□□□□□ -2.25
COL4A4P53420 SNORD115-40-201ENST00000606510 82 ntBASIC1.01□□□□□ -2.25
COL4A4P53420 MIR376A2-201ENST00000636782 80 ntBASIC1.01□□□□□ -2.25
COL4A4P53420 RNU6-363P-201ENST00000362895 105 ntBASIC1□□□□□ -2.25
COL4A4P53420 RNU6-832P-201ENST00000363319 107 ntBASIC1□□□□□ -2.25
COL4A4P53420 RNU6-424P-201ENST00000384367 105 ntBASIC1□□□□□ -2.25
COL4A4P53420 PGBD4P5-201ENST00000445958 426 ntBASIC1□□□□□ -2.25
COL4A4P53420 RNU6-893P-201ENST00000458841 100 ntBASIC1□□□□□ -2.25
COL4A4P53420 SCARNA23-201ENST00000516060 130 ntBASIC1□□□□□ -2.25
COL4A4P53420 RNU11-2P-201ENST00000516898 142 ntBASIC1□□□□□ -2.25
COL4A4P53420 RNU6-958P-201ENST00000516995 106 ntBASIC1□□□□□ -2.25
COL4A4P53420 snoMBII-202.2-201ENST00000517263 86 ntBASIC1□□□□□ -2.25
COL4A4P53420 MIR4529-201ENST00000578110 78 ntBASIC1□□□□□ -2.25
COL4A4P53420 MIR548AR-201ENST00000582191 57 ntBASIC1□□□□□ -2.25
COL4A4P53420 AL035470.1-201ENST00000622571 220 ntBASIC1□□□□□ -2.25
COL4A4P53420 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC1□□□□□ -2.25
COL4A4P53420 RNU6-414P-201ENST00000363705 104 ntBASIC1□□□□□ -2.25
COL4A4P53420 SNORA25B-201ENST00000365507 128 ntBASIC1□□□□□ -2.25
COL4A4P53420 Y_RNA.454-201ENST00000384224 113 ntBASIC1□□□□□ -2.25
Retrieved 100 of 98,524 protein–RNA pairs in 125.9 ms