Protein–RNA interactions for Protein: P49754

VPS41, Vacuolar protein sorting-associated protein 41 homolog, humanhuman

Predictions only

Length 854 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41P49754 Y_RNA.630-201ENST00000411370 108 ntBASIC1.26□□□□□ -2.21
VPS41P49754 AL512326.2-201ENST00000426359 151 ntBASIC1.26□□□□□ -2.21
VPS41P49754 AC108667.1-201ENST00000428618 249 ntBASIC1.26□□□□□ -2.21
VPS41P49754 RNU6-893P-201ENST00000458841 100 ntBASIC1.26□□□□□ -2.21
VPS41P49754 SNORD79.1-201ENST00000516069 84 ntBASIC1.26□□□□□ -2.21
VPS41P49754 AL365222.1-201ENST00000614661 98 ntBASIC1.26□□□□□ -2.21
VPS41P49754 SEPT14P17-201ENST00000617978 177 ntBASIC1.26□□□□□ -2.21
VPS41P49754 LINC00643-201ENST00000334389 3247 ntTSL 2 BASIC1.25□□□□□ -2.21
VPS41P49754 RNU6-22P-201ENST00000384355 107 ntBASIC1.25□□□□□ -2.21
VPS41P49754 RNU6-1117P-201ENST00000384525 104 ntBASIC1.25□□□□□ -2.21
VPS41P49754 SNORA19-201ENST00000384737 128 ntBASIC1.25□□□□□ -2.21
VPS41P49754 AL022718.1-201ENST00000412004 84 ntBASIC1.25□□□□□ -2.21
VPS41P49754 RNU7-21P-201ENST00000459430 62 ntBASIC1.25□□□□□ -2.21
VPS41P49754 AC004812.1-201ENST00000540773 146 ntBASIC1.25□□□□□ -2.21
VPS41P49754 IL6ST-203ENST00000381287 8667 ntTSL 5 BASIC1.25□□□□□ -2.21
VPS41P49754 LRRIQ1-202ENST00000393217 5394 ntAPPRIS P1 TSL 1 (best) BASIC1.25□□□□□ -2.21
VPS41P49754 MGAT4C-209ENST00000611864 25116 ntAPPRIS P1 TSL 5 BASIC1.24□□□□□ -2.21
VPS41P49754 MIR377-201ENST00000362145 69 ntBASIC1.24□□□□□ -2.21
VPS41P49754 RNU6-580P-201ENST00000365159 107 ntBASIC1.24□□□□□ -2.21
VPS41P49754 Y_RNA.354-201ENST00000365448 111 ntBASIC1.24□□□□□ -2.21
VPS41P49754 Y_RNA.470-201ENST00000384307 117 ntBASIC1.24□□□□□ -2.21
VPS41P49754 Y_RNA.531-201ENST00000384589 121 ntBASIC1.24□□□□□ -2.21
VPS41P49754 RNU6-1104P-201ENST00000384723 104 ntBASIC1.24□□□□□ -2.21
VPS41P49754 SNORD12C-201ENST00000386307 89 ntBASIC1.24□□□□□ -2.21
VPS41P49754 AL606753.1-201ENST00000427435 87 ntBASIC1.24□□□□□ -2.21
VPS41P49754 AC113410.1-201ENST00000505029 247 ntBASIC1.24□□□□□ -2.21
VPS41P49754 RNU6-237P-201ENST00000515985 71 ntBASIC1.24□□□□□ -2.21
VPS41P49754 RNU6-1333P-201ENST00000516162 93 ntBASIC1.24□□□□□ -2.21
VPS41P49754 MIR4264-201ENST00000583520 66 ntBASIC1.24□□□□□ -2.21
VPS41P49754 MIR4769-201ENST00000584126 77 ntBASIC1.24□□□□□ -2.21
VPS41P49754 U2.22-201ENST00000636441 106 ntBASIC1.24□□□□□ -2.21
VPS41P49754 MIR3914-2-201ENST00000637339 95 ntBASIC1.24□□□□□ -2.21
VPS41P49754 UHRF1BP1L-203ENST00000545232 4088 ntTSL 1 (best) BASIC1.24□□□□□ -2.21
VPS41P49754 MIR378A-201ENST00000362177 66 ntBASIC1.23□□□□□ -2.21
VPS41P49754 Y_RNA.261-201ENST00000364631 102 ntBASIC1.23□□□□□ -2.21
VPS41P49754 SNORA80D-201ENST00000384488 135 ntBASIC1.23□□□□□ -2.21
VPS41P49754 Y_RNA.563-201ENST00000384707 108 ntBASIC1.23□□□□□ -2.21
VPS41P49754 MT-TI-201ENST00000387365 69 ntBASIC1.23□□□□□ -2.21
VPS41P49754 MIR1285-1-201ENST00000408593 84 ntBASIC1.23□□□□□ -2.21
VPS41P49754 RNA5SP136-201ENST00000410906 107 ntBASIC1.23□□□□□ -2.21
VPS41P49754 AC008267.6-201ENST00000441664 139 ntBASIC1.23□□□□□ -2.21
VPS41P49754 AL353614.1-201ENST00000445631 206 ntTSL 5 BASIC1.23□□□□□ -2.21
VPS41P49754 RN7SKP179-201ENST00000516126 217 ntBASIC1.23□□□□□ -2.21
VPS41P49754 RNA5SP458-201ENST00000516188 119 ntBASIC1.23□□□□□ -2.21
VPS41P49754 RNU6-1061P-201ENST00000516530 99 ntBASIC1.23□□□□□ -2.21
VPS41P49754 AC022523.2-201ENST00000561045 150 ntBASIC1.23□□□□□ -2.21
VPS41P49754 MIR4421-201ENST00000578133 69 ntBASIC1.23□□□□□ -2.21
VPS41P49754 MIR3660-201ENST00000584845 100 ntBASIC1.23□□□□□ -2.21
VPS41P49754 MIR563-201ENST00000385080 79 ntBASIC1.22□□□□□ -2.21
VPS41P49754 RNU6-1168P-201ENST00000390831 104 ntBASIC1.22□□□□□ -2.21
VPS41P49754 MIR1263-201ENST00000408324 86 ntBASIC1.22□□□□□ -2.21
VPS41P49754 RNA5SP95-201ENST00000410319 137 ntBASIC1.22□□□□□ -2.21
VPS41P49754 AL591704.2-201ENST00000421658 181 ntBASIC1.22□□□□□ -2.21
VPS41P49754 snoU13.2-201ENST00000459201 104 ntBASIC1.22□□□□□ -2.21
VPS41P49754 RNU7-95P-201ENST00000459222 64 ntBASIC1.22□□□□□ -2.21
VPS41P49754 RNU7-113P-201ENST00000459273 62 ntBASIC1.22□□□□□ -2.21
VPS41P49754 SNORA70.22-201ENST00000517160 124 ntBASIC1.22□□□□□ -2.21
VPS41P49754 MIR6740-201ENST00000618268 113 ntBASIC1.22□□□□□ -2.21
VPS41P49754 CCDC68-202ENST00000432185 4014 ntAPPRIS P1 TSL 1 (best) BASIC1.21□□□□□ -2.22
VPS41P49754 SNORA7.1-201ENST00000363750 139 ntBASIC1.21□□□□□ -2.22
VPS41P49754 RNU6-205P-201ENST00000390858 107 ntBASIC1.21□□□□□ -2.22
VPS41P49754 SNORD12-201ENST00000391002 90 ntBASIC1.21□□□□□ -2.22
VPS41P49754 RPS23P4-201ENST00000487908 423 ntBASIC1.21□□□□□ -2.22
VPS41P49754 COX6CP6-201ENST00000490840 228 ntBASIC1.21□□□□□ -2.22
VPS41P49754 RNU6-479P-201ENST00000516348 105 ntBASIC1.21□□□□□ -2.22
VPS41P49754 AC036111.3-201ENST00000526389 112 ntBASIC1.21□□□□□ -2.22
VPS41P49754 AP000753.3-201ENST00000604083 169 ntBASIC1.21□□□□□ -2.22
VPS41P49754 AC025166.1-201ENST00000612411 163 ntBASIC1.21□□□□□ -2.22
VPS41P49754 AC027335.2-201ENST00000624030 375 ntBASIC1.21□□□□□ -2.22
VPS41P49754 MTND5P18-201ENST00000445624 1801 ntBASIC1.2□□□□□ -2.22
VPS41P49754 Y_RNA.168-201ENST00000363740 102 ntBASIC1.2□□□□□ -2.22
VPS41P49754 Y_RNA.198-201ENST00000364013 98 ntBASIC1.2□□□□□ -2.22
VPS41P49754 SNORA25-201ENST00000384384 134 ntBASIC1.2□□□□□ -2.22
VPS41P49754 RNU6-342P-201ENST00000384521 104 ntBASIC1.2□□□□□ -2.22
VPS41P49754 Y_RNA.528-201ENST00000384575 108 ntBASIC1.2□□□□□ -2.22
VPS41P49754 SNORA22C-201ENST00000384614 134 ntBASIC1.2□□□□□ -2.22
VPS41P49754 BTF3P4-201ENST00000418852 495 ntBASIC1.2□□□□□ -2.22
VPS41P49754 MIR1270-201ENST00000459320 83 ntBASIC1.2□□□□□ -2.22
VPS41P49754 OR2A41P-201ENST00000473586 105 ntBASIC1.2□□□□□ -2.22
VPS41P49754 RNU6-62P-201ENST00000516526 102 ntBASIC1.2□□□□□ -2.22
VPS41P49754 IGHVII-40-1-201ENST00000517316 58 ntBASIC1.2□□□□□ -2.22
VPS41P49754 uc_338.6-201ENST00000613544 171 ntBASIC1.2□□□□□ -2.22
VPS41P49754 AL157834.3-201ENST00000615543 103 ntBASIC1.2□□□□□ -2.22
VPS41P49754 RNA5SP205-201ENST00000364653 136 ntBASIC1.19□□□□□ -2.22
VPS41P49754 Y_RNA.330-201ENST00000365230 109 ntBASIC1.19□□□□□ -2.22
VPS41P49754 MIR588-201ENST00000384900 83 ntBASIC1.19□□□□□ -2.22
VPS41P49754 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC1.19□□□□□ -2.22
VPS41P49754 RNU7-40P-201ENST00000516397 64 ntBASIC1.19□□□□□ -2.22
VPS41P49754 RNA5SP33-201ENST00000516687 98 ntBASIC1.19□□□□□ -2.22
VPS41P49754 AC022596.1-201ENST00000582895 302 ntTSL 5 BASIC1.19□□□□□ -2.22
VPS41P49754 MIR548AE2-201ENST00000583456 67 ntBASIC1.19□□□□□ -2.22
VPS41P49754 Y_RNA.353-201ENST00000365440 108 ntBASIC1.18□□□□□ -2.22
VPS41P49754 SNORA18-201ENST00000384416 132 ntBASIC1.18□□□□□ -2.22
VPS41P49754 RNU6-735P-201ENST00000410612 107 ntBASIC1.18□□□□□ -2.22
VPS41P49754 AC002429.1-201ENST00000437672 148 ntBASIC1.18□□□□□ -2.22
VPS41P49754 RNU7-90P-201ENST00000459216 62 ntBASIC1.18□□□□□ -2.22
VPS41P49754 RNU7-35P-201ENST00000517174 62 ntBASIC1.18□□□□□ -2.22
VPS41P49754 AC106800.4-201ENST00000614905 153 ntBASIC1.18□□□□□ -2.22
VPS41P49754 AC008163.1-202ENST00000636004 2889 ntBASIC1.18□□□□□ -2.22
VPS41P49754 MIR30D-201ENST00000362283 70 ntBASIC1.17□□□□□ -2.22
Retrieved 100 of 98,524 protein–RNA pairs in 169.5 ms