Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 RNU6-1335P-201ENST00000365426 107 ntBASIC0.94□□□□□ -2.26
CTCFP49711 SNORD38B-201ENST00000384690 67 ntBASIC0.94□□□□□ -2.26
CTCFP49711 MIR624-201ENST00000385217 97 ntBASIC0.94□□□□□ -2.26
CTCFP49711 RNU6-994P-201ENST00000410507 111 ntBASIC0.94□□□□□ -2.26
CTCFP49711 RNU6-602P-201ENST00000411155 105 ntBASIC0.94□□□□□ -2.26
CTCFP49711 RPS3AP1-201ENST00000413190 320 ntBASIC0.94□□□□□ -2.26
CTCFP49711 U7.7-201ENST00000459276 60 ntBASIC0.94□□□□□ -2.26
CTCFP49711 AC092071.1-201ENST00000597260 549 ntTSL 5 BASIC0.94□□□□□ -2.26
CTCFP49711 AC078938.1-201ENST00000620993 318 ntBASIC0.94□□□□□ -2.26
CTCFP49711 AC091932.4-201ENST00000623386 200 ntBASIC0.94□□□□□ -2.26
CTCFP49711 SNORD38B-202ENST00000625943 69 ntBASIC0.94□□□□□ -2.26
CTCFP49711 Y_RNA.233-201ENST00000364407 101 ntBASIC0.93□□□□□ -2.26
CTCFP49711 MIR608-201ENST00000384820 100 ntBASIC0.93□□□□□ -2.26
CTCFP49711 SNORA26.6-201ENST00000391256 115 ntBASIC0.93□□□□□ -2.26
CTCFP49711 RNU6ATAC23P-201ENST00000408448 123 ntBASIC0.93□□□□□ -2.26
CTCFP49711 AC006461.1-201ENST00000412637 326 ntBASIC0.93□□□□□ -2.26
CTCFP49711 SEPT7P4-201ENST00000437076 306 ntBASIC0.93□□□□□ -2.26
CTCFP49711 snoU13.21-201ENST00000459368 105 ntBASIC0.93□□□□□ -2.26
CTCFP49711 PSMC1P5-201ENST00000512850 177 ntBASIC0.93□□□□□ -2.26
CTCFP49711 RNU6-1219P-201ENST00000516143 112 ntBASIC0.93□□□□□ -2.26
CTCFP49711 RNU6-1110P-201ENST00000516462 101 ntBASIC0.93□□□□□ -2.26
CTCFP49711 IGHVIII-67-2-201ENST00000519849 88 ntBASIC0.93□□□□□ -2.26
CTCFP49711 MIR4431-201ENST00000579990 94 ntBASIC0.93□□□□□ -2.26
CTCFP49711 HSBP1P2-201ENST00000299671 229 ntBASIC0.92□□□□□ -2.26
CTCFP49711 RNU6-369P-201ENST00000362515 102 ntBASIC0.92□□□□□ -2.26
CTCFP49711 SNORD89-201ENST00000390981 114 ntBASIC0.92□□□□□ -2.26
CTCFP49711 MIR1827-201ENST00000408549 66 ntBASIC0.92□□□□□ -2.26
CTCFP49711 AC067940.1-201ENST00000458411 300 ntBASIC0.92□□□□□ -2.26
CTCFP49711 RNU7-45P-201ENST00000459460 63 ntBASIC0.92□□□□□ -2.26
CTCFP49711 RNU7-80P-201ENST00000459562 61 ntBASIC0.92□□□□□ -2.26
CTCFP49711 SCARNA15-202ENST00000516881 127 ntBASIC0.92□□□□□ -2.26
CTCFP49711 RNU6-388P-201ENST00000517012 105 ntBASIC0.92□□□□□ -2.26
CTCFP49711 RNU6-389P-201ENST00000517048 105 ntBASIC0.92□□□□□ -2.26
CTCFP49711 AC022559.1-201ENST00000520905 205 ntBASIC0.92□□□□□ -2.26
CTCFP49711 MIR6740-201ENST00000618268 113 ntBASIC0.92□□□□□ -2.26
CTCFP49711 TEX15-201ENST00000256246 10110 ntTSL 1 (best) BASIC0.92□□□□□ -2.26
CTCFP49711 Y_RNA.297-201ENST00000364950 91 ntBASIC0.91□□□□□ -2.26
CTCFP49711 RNU6-597P-201ENST00000365620 102 ntBASIC0.91□□□□□ -2.26
CTCFP49711 Y_RNA.515-201ENST00000384535 112 ntBASIC0.91□□□□□ -2.26
CTCFP49711 MIR146A-201ENST00000385201 99 ntBASIC0.91□□□□□ -2.26
CTCFP49711 RNU7-62P-201ENST00000458856 62 ntBASIC0.91□□□□□ -2.26
CTCFP49711 Y_RNA.644-201ENST00000459006 113 ntBASIC0.91□□□□□ -2.26
CTCFP49711 Y_RNA.674-201ENST00000516362 113 ntBASIC0.91□□□□□ -2.26
CTCFP49711 AC010177.1-201ENST00000547819 366 ntTSL 3 BASIC0.91□□□□□ -2.26
CTCFP49711 uc_338.6-201ENST00000613544 171 ntBASIC0.91□□□□□ -2.26
CTCFP49711 MIR6717-201ENST00000622747 73 ntBASIC0.91□□□□□ -2.26
CTCFP49711 MIR302B-201ENST00000362188 73 ntBASIC0.9□□□□□ -2.27
CTCFP49711 SNORA25.7-201ENST00000364375 127 ntBASIC0.9□□□□□ -2.27
CTCFP49711 Y_RNA.454-201ENST00000384224 113 ntBASIC0.9□□□□□ -2.27
CTCFP49711 Y_RNA.476-201ENST00000384347 108 ntBASIC0.9□□□□□ -2.27
CTCFP49711 Y_RNA.549-201ENST00000384657 102 ntBASIC0.9□□□□□ -2.27
CTCFP49711 Y_RNA.552-201ENST00000384665 112 ntBASIC0.9□□□□□ -2.27
CTCFP49711 RNU6ATAC33P-201ENST00000408647 126 ntBASIC0.9□□□□□ -2.27
CTCFP49711 AL606490.4-201ENST00000423117 127 ntBASIC0.9□□□□□ -2.27
CTCFP49711 AC004148.1-201ENST00000571506 398 ntTSL 5 BASIC0.9□□□□□ -2.27
CTCFP49711 AL596211.1-201ENST00000569873 2277 ntBASIC0.9□□□□□ -2.27
CTCFP49711 RNU6-312P-201ENST00000364629 107 ntBASIC0.89□□□□□ -2.27
CTCFP49711 RNU6-1336P-201ENST00000383886 109 ntBASIC0.89□□□□□ -2.27
CTCFP49711 SNORD83.1-201ENST00000411362 77 ntBASIC0.89□□□□□ -2.27
CTCFP49711 AC013244.2-201ENST00000603396 103 ntBASIC0.89□□□□□ -2.27
CTCFP49711 RNU6-200P-201ENST00000364743 107 ntBASIC0.88□□□□□ -2.27
CTCFP49711 Y_RNA.521-201ENST00000384560 114 ntBASIC0.88□□□□□ -2.27
CTCFP49711 RNU6-768P-201ENST00000384683 107 ntBASIC0.88□□□□□ -2.27
CTCFP49711 MIR605-201ENST00000385078 83 ntBASIC0.88□□□□□ -2.27
CTCFP49711 snoU13.2-201ENST00000459201 104 ntBASIC0.88□□□□□ -2.27
CTCFP49711 SNORA62.5-201ENST00000516634 120 ntBASIC0.88□□□□□ -2.27
CTCFP49711 RNU6-1149P-201ENST00000516810 97 ntBASIC0.88□□□□□ -2.27
CTCFP49711 AC025627.3-201ENST00000582078 182 ntBASIC0.88□□□□□ -2.27
CTCFP49711 MIR4636-201ENST00000582271 80 ntBASIC0.88□□□□□ -2.27
CTCFP49711 AC072026.1-201ENST00000605023 201 ntBASIC0.88□□□□□ -2.27
CTCFP49711 AL353765.1-201ENST00000605514 183 ntBASIC0.88□□□□□ -2.27
CTCFP49711 AL136317.1-201ENST00000612653 226 ntBASIC0.88□□□□□ -2.27
CTCFP49711 SNORD114-2-201ENST00000363953 78 ntBASIC0.87□□□□□ -2.27
CTCFP49711 RNU6-934P-201ENST00000365154 107 ntBASIC0.87□□□□□ -2.27
CTCFP49711 RNU6-110P-201ENST00000384508 104 ntBASIC0.87□□□□□ -2.27
CTCFP49711 MIR588-201ENST00000384900 83 ntBASIC0.87□□□□□ -2.27
CTCFP49711 SNORD12C-201ENST00000386307 89 ntBASIC0.87□□□□□ -2.27
CTCFP49711 RNU6-1319P-201ENST00000390855 104 ntBASIC0.87□□□□□ -2.27
CTCFP49711 RNU6-747P-201ENST00000390928 104 ntBASIC0.87□□□□□ -2.27
CTCFP49711 RNU6-241P-201ENST00000391148 104 ntBASIC0.87□□□□□ -2.27
CTCFP49711 RNA5SP261-201ENST00000410536 106 ntBASIC0.87□□□□□ -2.27
CTCFP49711 RNU6-177P-201ENST00000411257 104 ntBASIC0.87□□□□□ -2.27
CTCFP49711 RPS26P5-201ENST00000418544 335 ntBASIC0.87□□□□□ -2.27
CTCFP49711 AC113410.1-201ENST00000505029 247 ntBASIC0.87□□□□□ -2.27
CTCFP49711 AC107027.2-201ENST00000512197 115 ntBASIC0.87□□□□□ -2.27
CTCFP49711 RNU6-138P-201ENST00000515952 107 ntBASIC0.87□□□□□ -2.27
CTCFP49711 AC004812.1-201ENST00000540773 146 ntBASIC0.87□□□□□ -2.27
CTCFP49711 MIR6866-201ENST00000638146 69 ntBASIC0.87□□□□□ -2.27
CTCFP49711 MIR1-1-201ENST00000362147 71 ntBASIC0.86□□□□□ -2.27
CTCFP49711 Y_RNA.430-201ENST00000384081 110 ntBASIC0.86□□□□□ -2.27
CTCFP49711 MIR563-201ENST00000385080 79 ntBASIC0.86□□□□□ -2.27
CTCFP49711 MIR100-201ENST00000385259 80 ntBASIC0.86□□□□□ -2.27
CTCFP49711 RNU6ATAC6P-201ENST00000408132 126 ntBASIC0.86□□□□□ -2.27
CTCFP49711 Y_RNA.793-201ENST00000411222 111 ntBASIC0.86□□□□□ -2.27
CTCFP49711 AC015818.7-201ENST00000428754 109 ntBASIC0.86□□□□□ -2.27
CTCFP49711 AC087499.7-201ENST00000441958 109 ntBASIC0.86□□□□□ -2.27
CTCFP49711 snoU13.19-201ENST00000459148 104 ntBASIC0.86□□□□□ -2.27
CTCFP49711 DLEU2_5.2-201ENST00000610606 84 ntBASIC0.86□□□□□ -2.27
CTCFP49711 MIR5087-201ENST00000635826 76 ntBASIC0.86□□□□□ -2.27
CTCFP49711 MTND5P32-201ENST00000560711 1802 ntBASIC0.86□□□□□ -2.27
Retrieved 100 of 98,524 protein–RNA pairs in 111.9 ms