Protein–RNA interactions for Protein: P48378

RFX2, DNA-binding protein RFX2, humanhuman

Predictions only

Length 723 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX2P48378 AL035470.1-201ENST00000622571 220 ntBASIC1.23□□□□□ -2.21
RFX2P48378 RNU6-654P-201ENST00000364373 107 ntBASIC1.22□□□□□ -2.21
RFX2P48378 RNU6-396P-201ENST00000365369 105 ntBASIC1.22□□□□□ -2.21
RFX2P48378 Y_RNA.354-201ENST00000365448 111 ntBASIC1.22□□□□□ -2.21
RFX2P48378 RNU6-44P-201ENST00000384045 107 ntBASIC1.22□□□□□ -2.21
RFX2P48378 SNORA18-201ENST00000384416 132 ntBASIC1.22□□□□□ -2.21
RFX2P48378 RNU6-880P-201ENST00000384526 107 ntBASIC1.22□□□□□ -2.21
RFX2P48378 MIR758-201ENST00000390227 88 ntBASIC1.22□□□□□ -2.21
RFX2P48378 RNU6-205P-201ENST00000390858 107 ntBASIC1.22□□□□□ -2.21
RFX2P48378 RNA5SP95-201ENST00000410319 137 ntBASIC1.22□□□□□ -2.21
RFX2P48378 AL035461.1-201ENST00000421490 332 ntBASIC1.22□□□□□ -2.21
RFX2P48378 AC079760.1-201ENST00000456952 202 ntTSL 3 BASIC1.22□□□□□ -2.21
RFX2P48378 MIR1270-201ENST00000459320 83 ntBASIC1.22□□□□□ -2.21
RFX2P48378 SNORA31.2-201ENST00000516019 134 ntBASIC1.22□□□□□ -2.21
RFX2P48378 ZNFX1-AS1_2.1-201ENST00000610973 93 ntBASIC1.22□□□□□ -2.21
RFX2P48378 MIR7843-201ENST00000622274 79 ntBASIC1.22□□□□□ -2.21
RFX2P48378 MIR6516-201ENST00000630554 81 ntBASIC1.22□□□□□ -2.21
RFX2P48378 KTN1-205ENST00000395314 4618 ntAPPRIS P4 TSL 1 (best) BASIC1.22□□□□□ -2.21
RFX2P48378 SNORA63.5-201ENST00000363548 123 ntBASIC1.21□□□□□ -2.22
RFX2P48378 RNY4P6-201ENST00000363667 96 ntBASIC1.21□□□□□ -2.22
RFX2P48378 Y_RNA.344-201ENST00000365381 112 ntBASIC1.21□□□□□ -2.22
RFX2P48378 Y_RNA.362-201ENST00000365518 110 ntBASIC1.21□□□□□ -2.22
RFX2P48378 MIR548D2-201ENST00000384955 97 ntBASIC1.21□□□□□ -2.22
RFX2P48378 U8.13-201ENST00000390842 128 ntBASIC1.21□□□□□ -2.22
RFX2P48378 RNU4-69P-201ENST00000410677 143 ntBASIC1.21□□□□□ -2.22
RFX2P48378 RNU6-589P-201ENST00000516485 107 ntBASIC1.21□□□□□ -2.22
RFX2P48378 RNU6-919P-201ENST00000516731 104 ntBASIC1.21□□□□□ -2.22
RFX2P48378 Y_RNA.709-201ENST00000516952 92 ntBASIC1.21□□□□□ -2.22
RFX2P48378 AC087741.2-201ENST00000619415 172 ntBASIC1.21□□□□□ -2.22
RFX2P48378 Y_RNA.299-201ENST00000364973 94 ntBASIC1.2□□□□□ -2.22
RFX2P48378 RNU6ATAC2P-201ENST00000387943 126 ntBASIC1.2□□□□□ -2.22
RFX2P48378 RNY4P18-201ENST00000391107 89 ntBASIC1.2□□□□□ -2.22
RFX2P48378 AL354695.1-201ENST00000427935 228 ntBASIC1.2□□□□□ -2.22
RFX2P48378 SNORA25.15-201ENST00000516487 89 ntBASIC1.2□□□□□ -2.22
RFX2P48378 MIR2115-201ENST00000516657 100 ntBASIC1.2□□□□□ -2.22
RFX2P48378 AC024382.1-201ENST00000520224 292 ntTSL 3 BASIC1.2□□□□□ -2.22
RFX2P48378 MIR6845-201ENST00000613182 61 ntBASIC1.2□□□□□ -2.22
RFX2P48378 UHRF1BP1L-203ENST00000545232 4088 ntTSL 1 (best) BASIC1.2□□□□□ -2.22
RFX2P48378 SNORA63.4-201ENST00000362763 126 ntBASIC1.19□□□□□ -2.22
RFX2P48378 Y_RNA.330-201ENST00000365230 109 ntBASIC1.19□□□□□ -2.22
RFX2P48378 Y_RNA.363-201ENST00000365529 113 ntBASIC1.19□□□□□ -2.22
RFX2P48378 RNU6-1054P-201ENST00000411293 104 ntBASIC1.19□□□□□ -2.22
RFX2P48378 AC090616.3-202ENST00000583346 205 ntTSL 2 BASIC1.19□□□□□ -2.22
RFX2P48378 AP000753.3-201ENST00000604083 169 ntBASIC1.19□□□□□ -2.22
RFX2P48378 Y_RNA.773-201ENST00000607168 90 ntBASIC1.19□□□□□ -2.22
RFX2P48378 SAGE1-201ENST00000324447 2952 ntAPPRIS P2 TSL 5 BASIC1.19□□□□□ -2.22
RFX2P48378 SNORA22-201ENST00000383907 134 ntBASIC1.18□□□□□ -2.22
RFX2P48378 MIR588-201ENST00000384900 83 ntBASIC1.18□□□□□ -2.22
RFX2P48378 RNA5SP237-201ENST00000410414 113 ntBASIC1.18□□□□□ -2.22
RFX2P48378 AC063976.4-201ENST00000421971 163 ntBASIC1.18□□□□□ -2.22
RFX2P48378 RNU1-41P-201ENST00000516161 162 ntBASIC1.18□□□□□ -2.22
RFX2P48378 RNU1-48P-201ENST00000516400 162 ntBASIC1.18□□□□□ -2.22
RFX2P48378 SNORD53B-201ENST00000577887 78 ntBASIC1.18□□□□□ -2.22
RFX2P48378 MIR6740-201ENST00000618268 113 ntBASIC1.18□□□□□ -2.22
RFX2P48378 MIR1255B1-201ENST00000636325 63 ntBASIC1.18□□□□□ -2.22
RFX2P48378 RNU6-616P-201ENST00000384353 107 ntBASIC1.17□□□□□ -2.22
RFX2P48378 RNU6ATAC3P-201ENST00000387974 126 ntBASIC1.17□□□□□ -2.22
RFX2P48378 SNORD77B-201ENST00000391112 67 ntBASIC1.17□□□□□ -2.22
RFX2P48378 SNORA75.2-201ENST00000391138 150 ntBASIC1.17□□□□□ -2.22
RFX2P48378 SNORA75.3-201ENST00000391231 150 ntBASIC1.17□□□□□ -2.22
RFX2P48378 RNU6-1086P-201ENST00000410930 100 ntBASIC1.17□□□□□ -2.22
RFX2P48378 RNU7-62P-201ENST00000458856 62 ntBASIC1.17□□□□□ -2.22
RFX2P48378 snoU13.2-201ENST00000459201 104 ntBASIC1.17□□□□□ -2.22
RFX2P48378 RNU11-2P-201ENST00000516898 142 ntBASIC1.17□□□□□ -2.22
RFX2P48378 RNU6-295P-201ENST00000516901 104 ntBASIC1.17□□□□□ -2.22
RFX2P48378 SNORA31.24-201ENST00000517232 57 ntBASIC1.17□□□□□ -2.22
RFX2P48378 MIR4679-2-201ENST00000578358 77 ntBASIC1.17□□□□□ -2.22
RFX2P48378 MIR4264-201ENST00000583520 66 ntBASIC1.17□□□□□ -2.22
RFX2P48378 GNAS-AS1_4.1-201ENST00000616546 112 ntBASIC1.17□□□□□ -2.22
RFX2P48378 AL589743.1-201ENST00000551932 2712 ntBASIC1.17□□□□□ -2.22
RFX2P48378 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC1.16□□□□□ -2.22
RFX2P48378 UBE3A-225ENST00000636667 5726 ntTSL 5 BASIC1.16□□□□□ -2.22
RFX2P48378 Y_RNA.81-201ENST00000362997 102 ntBASIC1.16□□□□□ -2.22
RFX2P48378 Y_RNA.281-201ENST00000364774 94 ntBASIC1.16□□□□□ -2.22
RFX2P48378 RNU6-910P-201ENST00000390844 107 ntBASIC1.16□□□□□ -2.22
RFX2P48378 SNORA67.6-201ENST00000391093 99 ntBASIC1.16□□□□□ -2.22
RFX2P48378 RNU6-613P-201ENST00000410412 108 ntBASIC1.16□□□□□ -2.22
RFX2P48378 snoU13.26-201ENST00000459452 105 ntBASIC1.16□□□□□ -2.22
RFX2P48378 RNU7-79P-201ENST00000516082 62 ntBASIC1.16□□□□□ -2.22
RFX2P48378 RNU7-35P-201ENST00000517174 62 ntBASIC1.16□□□□□ -2.22
RFX2P48378 uc_338.6-201ENST00000613544 171 ntBASIC1.16□□□□□ -2.22
RFX2P48378 AL662814.1-201ENST00000617364 121 ntBASIC1.16□□□□□ -2.22
RFX2P48378 SEPT14P17-201ENST00000617978 177 ntBASIC1.16□□□□□ -2.22
RFX2P48378 Y_RNA.85-201ENST00000363014 111 ntBASIC1.15□□□□□ -2.23
RFX2P48378 SNORD115-19-201ENST00000363098 82 ntBASIC1.15□□□□□ -2.23
RFX2P48378 SNORD115-18-201ENST00000363293 82 ntBASIC1.15□□□□□ -2.23
RFX2P48378 SNORD115-17-201ENST00000364612 82 ntBASIC1.15□□□□□ -2.23
RFX2P48378 RNU6-1107P-201ENST00000364817 104 ntBASIC1.15□□□□□ -2.23
RFX2P48378 SNORA2B-201ENST00000384583 137 ntBASIC1.15□□□□□ -2.23
RFX2P48378 MT-TN-201ENST00000387400 73 ntBASIC1.15□□□□□ -2.23
RFX2P48378 snoU13.15-201ENST00000459407 104 ntBASIC1.15□□□□□ -2.23
RFX2P48378 RNU6-412P-201ENST00000516434 106 ntBASIC1.15□□□□□ -2.23
RFX2P48378 AC141846.1-201ENST00000568348 142 ntBASIC1.15□□□□□ -2.23
RFX2P48378 MIR3945-201ENST00000581853 98 ntBASIC1.15□□□□□ -2.23
RFX2P48378 RNU6-60P-201ENST00000364792 103 ntBASIC1.14□□□□□ -2.23
RFX2P48378 RNY1P13-201ENST00000365030 105 ntBASIC1.14□□□□□ -2.23
RFX2P48378 RNU6-816P-201ENST00000390914 107 ntBASIC1.14□□□□□ -2.23
RFX2P48378 RNU6-1268P-201ENST00000391214 107 ntBASIC1.14□□□□□ -2.23
RFX2P48378 RNU6-1239P-201ENST00000391310 107 ntBASIC1.14□□□□□ -2.23
RFX2P48378 SNORA26.9-201ENST00000391322 122 ntBASIC1.14□□□□□ -2.23
Retrieved 100 of 98,524 protein–RNA pairs in 147.9 ms