Protein–RNA interactions for Protein: P28356

HOXD9, Homeobox protein Hox-D9, humanhuman

Predicted RBP Predictions only

Length 352 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD9P28356 AC073127.1-201ENST00000447336 333 ntTSL 3 BASIC1.46□□□□□ -2.18
HOXD9P28356 AC245517.4-201ENST00000448601 281 ntBASIC1.46□□□□□ -2.18
HOXD9P28356 RPS23P4-201ENST00000487908 423 ntBASIC1.46□□□□□ -2.18
HOXD9P28356 RNA5SP445-201ENST00000515889 115 ntBASIC1.46□□□□□ -2.18
HOXD9P28356 RNU6-1258P-201ENST00000516911 111 ntBASIC1.46□□□□□ -2.18
HOXD9P28356 RNU1-92P-201ENST00000517017 135 ntBASIC1.46□□□□□ -2.18
HOXD9P28356 AC022523.2-201ENST00000561045 150 ntBASIC1.46□□□□□ -2.18
HOXD9P28356 MIR3163-201ENST00000581592 73 ntBASIC1.46□□□□□ -2.18
HOXD9P28356 AL357312.1-201ENST00000603879 298 ntBASIC1.46□□□□□ -2.18
HOXD9P28356 SPTSSB-205ENST00000620149 231 ntAPPRIS P1 BASIC1.46□□□□□ -2.18
HOXD9P28356 Z97988.1-201ENST00000637697 135 ntBASIC1.46□□□□□ -2.18
HOXD9P28356 AL391516.1-201ENST00000554380 2449 ntBASIC1.46□□□□□ -2.18
HOXD9P28356 CEP162-201ENST00000257766 5063 ntTSL 1 (best) BASIC1.45□□□□□ -2.18
HOXD9P28356 SNORA7.1-201ENST00000363750 139 ntBASIC1.45□□□□□ -2.18
HOXD9P28356 Y_RNA.299-201ENST00000364973 94 ntBASIC1.45□□□□□ -2.18
HOXD9P28356 SNORD12C-201ENST00000386307 89 ntBASIC1.45□□□□□ -2.18
HOXD9P28356 RNU6-1190P-201ENST00000410811 104 ntBASIC1.45□□□□□ -2.18
HOXD9P28356 AC023790.1-201ENST00000482174 347 ntBASIC1.45□□□□□ -2.18
HOXD9P28356 AC113410.1-201ENST00000505029 247 ntBASIC1.45□□□□□ -2.18
HOXD9P28356 RNU6-970P-201ENST00000516312 107 ntBASIC1.45□□□□□ -2.18
HOXD9P28356 GHRLOS.1-201ENST00000610995 70 ntBASIC1.45□□□□□ -2.18
HOXD9P28356 AP000648.3-201ENST00000623539 4507 ntBASIC1.44□□□□□ -2.18
HOXD9P28356 Y_RNA.4-201ENST00000362333 112 ntBASIC1.44□□□□□ -2.18
HOXD9P28356 SNORA63.4-201ENST00000362763 126 ntBASIC1.44□□□□□ -2.18
HOXD9P28356 Y_RNA.362-201ENST00000365518 110 ntBASIC1.44□□□□□ -2.18
HOXD9P28356 Y_RNA.549-201ENST00000384657 102 ntBASIC1.44□□□□□ -2.18
HOXD9P28356 MIR548D2-201ENST00000384955 97 ntBASIC1.44□□□□□ -2.18
HOXD9P28356 RNU6ATAC2P-201ENST00000387943 126 ntBASIC1.44□□□□□ -2.18
HOXD9P28356 RPS3AP1-201ENST00000413190 320 ntBASIC1.44□□□□□ -2.18
HOXD9P28356 RPL39P34-201ENST00000477141 156 ntBASIC1.44□□□□□ -2.18
HOXD9P28356 RNU7-41P-201ENST00000515917 61 ntBASIC1.44□□□□□ -2.18
HOXD9P28356 RNU6-902P-201ENST00000517212 91 ntBASIC1.44□□□□□ -2.18
HOXD9P28356 AC019176.1-201ENST00000518519 225 ntBASIC1.44□□□□□ -2.18
HOXD9P28356 MIR3937-201ENST00000580135 106 ntBASIC1.44□□□□□ -2.18
HOXD9P28356 RNU6-94P-201ENST00000607728 107 ntBASIC1.44□□□□□ -2.18
HOXD9P28356 FAS-AS1.2-201ENST00000620386 170 ntBASIC1.44□□□□□ -2.18
HOXD9P28356 MIR4251-201ENST00000635819 61 ntBASIC1.44□□□□□ -2.18
HOXD9P28356 KTN1-205ENST00000395314 4618 ntAPPRIS P4 TSL 1 (best) BASIC1.44□□□□□ -2.18
HOXD9P28356 Y_RNA.171-201ENST00000363760 102 ntBASIC1.43□□□□□ -2.18
HOXD9P28356 SNORA1.1-201ENST00000364671 133 ntBASIC1.43□□□□□ -2.18
HOXD9P28356 RNU6-1107P-201ENST00000364817 104 ntBASIC1.43□□□□□ -2.18
HOXD9P28356 RNU6ATAC3P-201ENST00000387974 126 ntBASIC1.43□□□□□ -2.18
HOXD9P28356 ZNF468-202ENST00000396409 384 ntTSL 5 BASIC1.43□□□□□ -2.18
HOXD9P28356 AC027119.1-201ENST00000440877 241 ntBASIC1.43□□□□□ -2.18
HOXD9P28356 RNU7-113P-201ENST00000459273 62 ntBASIC1.43□□□□□ -2.18
HOXD9P28356 RNU6-922P-201ENST00000516753 99 ntBASIC1.43□□□□□ -2.18
HOXD9P28356 AC090616.3-202ENST00000583346 205 ntTSL 2 BASIC1.43□□□□□ -2.18
HOXD9P28356 AL035470.1-201ENST00000622571 220 ntBASIC1.43□□□□□ -2.18
HOXD9P28356 NPAT-201ENST00000278612 6117 ntAPPRIS P2 TSL 1 (best) BASIC1.42□□□□□ -2.18
HOXD9P28356 AL589743.1-201ENST00000551932 2712 ntBASIC1.42□□□□□ -2.18
HOXD9P28356 SNORD115-19-201ENST00000363098 82 ntBASIC1.42□□□□□ -2.18
HOXD9P28356 SNORD115-18-201ENST00000363293 82 ntBASIC1.42□□□□□ -2.18
HOXD9P28356 RNA5SP48-201ENST00000363969 126 ntBASIC1.42□□□□□ -2.18
HOXD9P28356 SNORD115-17-201ENST00000364612 82 ntBASIC1.42□□□□□ -2.18
HOXD9P28356 Y_RNA.323-201ENST00000365157 109 ntBASIC1.42□□□□□ -2.18
HOXD9P28356 Y_RNA.354-201ENST00000365448 111 ntBASIC1.42□□□□□ -2.18
HOXD9P28356 RNU6-1065P-201ENST00000384513 106 ntBASIC1.42□□□□□ -2.18
HOXD9P28356 RNU4-69P-201ENST00000410677 143 ntBASIC1.42□□□□□ -2.18
HOXD9P28356 HMGN1P33-201ENST00000432945 451 ntBASIC1.42□□□□□ -2.18
HOXD9P28356 SNORD111.1-201ENST00000516421 86 ntBASIC1.42□□□□□ -2.18
HOXD9P28356 RNA5SP61-201ENST00000516453 100 ntBASIC1.42□□□□□ -2.18
HOXD9P28356 MIR548AO-201ENST00000579992 96 ntBASIC1.42□□□□□ -2.18
HOXD9P28356 AC087741.2-201ENST00000619415 172 ntBASIC1.42□□□□□ -2.18
HOXD9P28356 WWP1P1-201ENST00000466609 2769 ntBASIC1.42□□□□□ -2.18
HOXD9P28356 Y_RNA.49-201ENST00000362714 112 ntBASIC1.41□□□□□ -2.18
HOXD9P28356 Y_RNA.344-201ENST00000365381 112 ntBASIC1.41□□□□□ -2.18
HOXD9P28356 Y_RNA.470-201ENST00000384307 117 ntBASIC1.41□□□□□ -2.18
HOXD9P28356 RNU6-106P-201ENST00000384405 107 ntBASIC1.41□□□□□ -2.18
HOXD9P28356 RNU6-602P-201ENST00000411155 105 ntBASIC1.41□□□□□ -2.18
HOXD9P28356 RNU1-98P-201ENST00000458992 160 ntBASIC1.41□□□□□ -2.18
HOXD9P28356 NMTRQ-TTG12-1-201ENST00000467595 72 ntBASIC1.41□□□□□ -2.18
HOXD9P28356 AC078980.1-201ENST00000485384 262 ntTSL 2 BASIC1.41□□□□□ -2.18
HOXD9P28356 RNU7-6P-201ENST00000516845 62 ntBASIC1.41□□□□□ -2.18
HOXD9P28356 MIR3192-201ENST00000584920 77 ntBASIC1.41□□□□□ -2.18
HOXD9P28356 AL096861.1-201ENST00000610899 123 ntBASIC1.41□□□□□ -2.18
HOXD9P28356 MIR8065-201ENST00000620577 100 ntBASIC1.41□□□□□ -2.18
HOXD9P28356 Y_RNA.116-201ENST00000363292 103 ntBASIC1.4□□□□□ -2.19
HOXD9P28356 TRMT112P2-201ENST00000512910 132 ntBASIC1.4□□□□□ -2.19
HOXD9P28356 RNA5SP33-201ENST00000516687 98 ntBASIC1.4□□□□□ -2.19
HOXD9P28356 SENP7-201ENST00000314261 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC1.39□□□□□ -2.19
HOXD9P28356 SNORA63.5-201ENST00000363548 123 ntBASIC1.39□□□□□ -2.19
HOXD9P28356 Y_RNA.164-201ENST00000363709 102 ntBASIC1.39□□□□□ -2.19
HOXD9P28356 Y_RNA.309-201ENST00000365046 111 ntBASIC1.39□□□□□ -2.19
HOXD9P28356 RNU6-1014P-201ENST00000383940 103 ntBASIC1.39□□□□□ -2.19
HOXD9P28356 RNU6-147P-201ENST00000383983 107 ntBASIC1.39□□□□□ -2.19
HOXD9P28356 RPS27P16-201ENST00000425758 201 ntBASIC1.39□□□□□ -2.19
HOXD9P28356 Y_RNA.676-201ENST00000516393 96 ntBASIC1.39□□□□□ -2.19
HOXD9P28356 AC068339.1-201ENST00000526965 141 ntBASIC1.39□□□□□ -2.19
HOXD9P28356 AP003716.2-201ENST00000528260 108 ntBASIC1.39□□□□□ -2.19
HOXD9P28356 MIR5009-201ENST00000578736 100 ntBASIC1.39□□□□□ -2.19
HOXD9P28356 MIR548AE2-201ENST00000583456 67 ntBASIC1.39□□□□□ -2.19
HOXD9P28356 MIR4781-201ENST00000585250 76 ntBASIC1.39□□□□□ -2.19
HOXD9P28356 U8.6-201ENST00000364939 135 ntBASIC1.38□□□□□ -2.19
HOXD9P28356 Y_RNA.327-201ENST00000365201 102 ntBASIC1.38□□□□□ -2.19
HOXD9P28356 MIR1302-7-201ENST00000408841 72 ntBASIC1.38□□□□□ -2.19
HOXD9P28356 AC090844.1-201ENST00000422019 156 ntBASIC1.38□□□□□ -2.19
HOXD9P28356 snoU13.25-201ENST00000458945 104 ntBASIC1.38□□□□□ -2.19
HOXD9P28356 RNU1-123P-201ENST00000458950 160 ntBASIC1.38□□□□□ -2.19
HOXD9P28356 MIR1270-201ENST00000459320 83 ntBASIC1.38□□□□□ -2.19
HOXD9P28356 AC004223.1-201ENST00000479840 271 ntBASIC1.38□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 185.6 ms