Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 AL022718.1-201ENST00000412004 84 ntBASIC1.72□□□□□ -2.13
HLA-DOAP06340 RNU7-73P-201ENST00000458743 63 ntBASIC1.72□□□□□ -2.13
HLA-DOAP06340 RNA5SP445-201ENST00000515889 115 ntBASIC1.72□□□□□ -2.13
HLA-DOAP06340 RNU6-168P-201ENST00000516189 101 ntBASIC1.72□□□□□ -2.13
HLA-DOAP06340 RNU7-53P-201ENST00000516705 60 ntBASIC1.72□□□□□ -2.13
HLA-DOAP06340 MIR548AO-201ENST00000579992 96 ntBASIC1.72□□□□□ -2.13
HLA-DOAP06340 U8.6-201ENST00000364939 135 ntBASIC1.71□□□□□ -2.14
HLA-DOAP06340 Y_RNA.537-201ENST00000384626 109 ntBASIC1.71□□□□□ -2.14
HLA-DOAP06340 AL031737.1-201ENST00000450125 223 ntBASIC1.71□□□□□ -2.14
HLA-DOAP06340 RNU7-113P-201ENST00000459273 62 ntBASIC1.71□□□□□ -2.14
HLA-DOAP06340 NMTRQ-TTG12-1-201ENST00000467595 72 ntBASIC1.71□□□□□ -2.14
HLA-DOAP06340 RPS23P4-201ENST00000487908 423 ntBASIC1.71□□□□□ -2.14
HLA-DOAP06340 RNU6-412P-201ENST00000516434 106 ntBASIC1.71□□□□□ -2.14
HLA-DOAP06340 AC015688.6-201ENST00000577737 104 ntBASIC1.71□□□□□ -2.14
HLA-DOAP06340 MIR4679-2-201ENST00000578358 77 ntBASIC1.71□□□□□ -2.14
HLA-DOAP06340 MIR3163-201ENST00000581592 73 ntBASIC1.71□□□□□ -2.14
HLA-DOAP06340 MIR548AE2-201ENST00000583456 67 ntBASIC1.71□□□□□ -2.14
HLA-DOAP06340 MIR3192-201ENST00000584920 77 ntBASIC1.71□□□□□ -2.14
HLA-DOAP06340 MIR8055-201ENST00000610739 97 ntBASIC1.71□□□□□ -2.14
HLA-DOAP06340 AL359851.1-201ENST00000569460 4997 ntBASIC1.7□□□□□ -2.14
HLA-DOAP06340 Y_RNA.163-201ENST00000363702 113 ntBASIC1.7□□□□□ -2.14
HLA-DOAP06340 SNORA32-201ENST00000384072 121 ntBASIC1.7□□□□□ -2.14
HLA-DOAP06340 SNORA70.7-201ENST00000384159 133 ntBASIC1.7□□□□□ -2.14
HLA-DOAP06340 MIR759-201ENST00000390224 91 ntBASIC1.7□□□□□ -2.14
HLA-DOAP06340 snoU13.25-201ENST00000458945 104 ntBASIC1.7□□□□□ -2.14
HLA-DOAP06340 AC068339.1-201ENST00000526965 141 ntBASIC1.7□□□□□ -2.14
HLA-DOAP06340 AL589743.1-201ENST00000551932 2712 ntBASIC1.7□□□□□ -2.14
HLA-DOAP06340 AC131280.1-202ENST00000624067 4211 ntBASIC1.7□□□□□ -2.14
HLA-DOAP06340 SNORA1.1-201ENST00000364671 133 ntBASIC1.69□□□□□ -2.14
HLA-DOAP06340 Y_RNA.327-201ENST00000365201 102 ntBASIC1.69□□□□□ -2.14
HLA-DOAP06340 Y_RNA.495-201ENST00000384435 112 ntBASIC1.69□□□□□ -2.14
HLA-DOAP06340 RNU6-342P-201ENST00000384521 104 ntBASIC1.69□□□□□ -2.14
HLA-DOAP06340 HSPE1P24-201ENST00000450782 238 ntBASIC1.69□□□□□ -2.14
HLA-DOAP06340 AC113410.1-201ENST00000505029 247 ntBASIC1.69□□□□□ -2.14
HLA-DOAP06340 RNU7-43P-201ENST00000516554 64 ntBASIC1.69□□□□□ -2.14
HLA-DOAP06340 RNA5SP33-201ENST00000516687 98 ntBASIC1.69□□□□□ -2.14
HLA-DOAP06340 AC019176.1-201ENST00000518519 225 ntBASIC1.69□□□□□ -2.14
HLA-DOAP06340 AL157834.3-201ENST00000615543 103 ntBASIC1.69□□□□□ -2.14
HLA-DOAP06340 BRCA1-202ENST00000354071 4497 ntTSL 1 (best) BASIC1.68□□□□□ -2.14
HLA-DOAP06340 MUC15-203ENST00000455601 3156 ntAPPRIS P1 TSL 2 BASIC1.68□□□□□ -2.14
HLA-DOAP06340 RNA5SP363-201ENST00000365072 115 ntBASIC1.68□□□□□ -2.14
HLA-DOAP06340 Y_RNA.323-201ENST00000365157 109 ntBASIC1.68□□□□□ -2.14
HLA-DOAP06340 snoU13.9-201ENST00000458927 103 ntBASIC1.68□□□□□ -2.14
HLA-DOAP06340 RNU6-109P-201ENST00000516364 107 ntBASIC1.68□□□□□ -2.14
HLA-DOAP06340 RNU6-184P-201ENST00000516514 107 ntBASIC1.68□□□□□ -2.14
HLA-DOAP06340 MIR5009-201ENST00000578736 100 ntBASIC1.68□□□□□ -2.14
HLA-DOAP06340 AL096861.1-201ENST00000610899 123 ntBASIC1.68□□□□□ -2.14
HLA-DOAP06340 MIR4251-201ENST00000635819 61 ntBASIC1.68□□□□□ -2.14
HLA-DOAP06340 SNORA25.3-201ENST00000363205 127 ntBASIC1.67□□□□□ -2.14
HLA-DOAP06340 SNORD1A-201ENST00000364968 72 ntBASIC1.67□□□□□ -2.14
HLA-DOAP06340 Y_RNA.328-201ENST00000365208 113 ntBASIC1.67□□□□□ -2.14
HLA-DOAP06340 RNU6-756P-201ENST00000383997 107 ntBASIC1.67□□□□□ -2.14
HLA-DOAP06340 SNORA51.5-201ENST00000384126 131 ntBASIC1.67□□□□□ -2.14
HLA-DOAP06340 RNU6-816P-201ENST00000390914 107 ntBASIC1.67□□□□□ -2.14
HLA-DOAP06340 RNU6-1268P-201ENST00000391214 107 ntBASIC1.67□□□□□ -2.14
HLA-DOAP06340 RNU6-1239P-201ENST00000391310 107 ntBASIC1.67□□□□□ -2.14
HLA-DOAP06340 RNA5SP247-201ENST00000411181 105 ntBASIC1.67□□□□□ -2.14
HLA-DOAP06340 snoU13.16-201ENST00000459350 104 ntBASIC1.67□□□□□ -2.14
HLA-DOAP06340 MIR3122-201ENST00000577243 73 ntBASIC1.67□□□□□ -2.14
HLA-DOAP06340 AL162726.3-218ENST00000636401 95 ntBASIC1.67□□□□□ -2.14
HLA-DOAP06340 SENP7-201ENST00000314261 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC1.66□□□□□ -2.14
HLA-DOAP06340 RNU6-616P-201ENST00000384353 107 ntBASIC1.66□□□□□ -2.14
HLA-DOAP06340 MIR30A-201ENST00000385092 71 ntBASIC1.66□□□□□ -2.14
HLA-DOAP06340 AL451046.2-201ENST00000403074 277 ntBASIC1.66□□□□□ -2.14
HLA-DOAP06340 RNU6-602P-201ENST00000411155 105 ntBASIC1.66□□□□□ -2.14
HLA-DOAP06340 AC012668.1-201ENST00000457625 228 ntTSL 3 BASIC1.66□□□□□ -2.14
HLA-DOAP06340 RNA5SP233-201ENST00000459153 113 ntBASIC1.66□□□□□ -2.14
HLA-DOAP06340 SNORD111.1-201ENST00000516421 86 ntBASIC1.66□□□□□ -2.14
HLA-DOAP06340 RNU6-537P-201ENST00000517277 103 ntBASIC1.66□□□□□ -2.14
HLA-DOAP06340 MIR3152-201ENST00000579801 74 ntBASIC1.66□□□□□ -2.14
HLA-DOAP06340 RNU6-94P-201ENST00000607728 107 ntBASIC1.66□□□□□ -2.14
HLA-DOAP06340 AL353770.2-201ENST00000620024 78 ntBASIC1.66□□□□□ -2.14
HLA-DOAP06340 MIR8065-201ENST00000620577 100 ntBASIC1.66□□□□□ -2.14
HLA-DOAP06340 SNORD115-2-201ENST00000362842 82 ntBASIC1.65□□□□□ -2.15
HLA-DOAP06340 SNORD115-20-201ENST00000365099 82 ntBASIC1.65□□□□□ -2.15
HLA-DOAP06340 MIR590-201ENST00000385008 97 ntBASIC1.65□□□□□ -2.15
HLA-DOAP06340 MIR605-201ENST00000385078 83 ntBASIC1.65□□□□□ -2.15
HLA-DOAP06340 RNU4-69P-201ENST00000410677 143 ntBASIC1.65□□□□□ -2.15
HLA-DOAP06340 RPS3AP1-201ENST00000413190 320 ntBASIC1.65□□□□□ -2.15
HLA-DOAP06340 AL353813.1-201ENST00000440700 253 ntBASIC1.65□□□□□ -2.15
HLA-DOAP06340 RPL39P25-201ENST00000449384 154 ntBASIC1.65□□□□□ -2.15
HLA-DOAP06340 RNU6-322P-201ENST00000516010 103 ntBASIC1.65□□□□□ -2.15
HLA-DOAP06340 RNU6-947P-201ENST00000516264 106 ntBASIC1.65□□□□□ -2.15
HLA-DOAP06340 AC007991.3-201ENST00000517623 502 ntTSL 4 BASIC1.65□□□□□ -2.15
HLA-DOAP06340 AC141557.1-201ENST00000540982 400 ntBASIC1.65□□□□□ -2.15
HLA-DOAP06340 MIR302D-201ENST00000362275 68 ntBASIC1.64□□□□□ -2.15
HLA-DOAP06340 RNU6-766P-201ENST00000362478 107 ntBASIC1.64□□□□□ -2.15
HLA-DOAP06340 Y_RNA.49-201ENST00000362714 112 ntBASIC1.64□□□□□ -2.15
HLA-DOAP06340 RNU6-392P-201ENST00000364926 101 ntBASIC1.64□□□□□ -2.15
HLA-DOAP06340 RNU6-32P-201ENST00000383948 107 ntBASIC1.64□□□□□ -2.15
HLA-DOAP06340 Y_RNA.430-201ENST00000384081 110 ntBASIC1.64□□□□□ -2.15
HLA-DOAP06340 RNU6-13P-201ENST00000384248 107 ntBASIC1.64□□□□□ -2.15
HLA-DOAP06340 RNU6-12P-201ENST00000384604 107 ntBASIC1.64□□□□□ -2.15
HLA-DOAP06340 RNU6-41P-201ENST00000384741 107 ntBASIC1.64□□□□□ -2.15
HLA-DOAP06340 MIR320A-201ENST00000385302 82 ntBASIC1.64□□□□□ -2.15
HLA-DOAP06340 MIR1302-7-201ENST00000408841 72 ntBASIC1.64□□□□□ -2.15
HLA-DOAP06340 AC245047.7-201ENST00000440265 293 ntBASIC1.64□□□□□ -2.15
HLA-DOAP06340 RNA5SP170-201ENST00000517150 101 ntBASIC1.64□□□□□ -2.15
HLA-DOAP06340 IGHVII-40-1-201ENST00000517316 58 ntBASIC1.64□□□□□ -2.15
HLA-DOAP06340 AL096840.1-201ENST00000603287 93 ntBASIC1.64□□□□□ -2.15
Retrieved 100 of 98,524 protein–RNA pairs in 170.8 ms