Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 Y_RNA.461-201ENST00000384263 103 ntBASIC-1.44□□□□□ -2.64
TNFP01375 RNU6-517P-201ENST00000384362 110 ntBASIC-1.44□□□□□ -2.64
TNFP01375 RNU6-429P-201ENST00000384582 108 ntBASIC-1.44□□□□□ -2.64
TNFP01375 Y_RNA.601-201ENST00000410500 113 ntBASIC-1.44□□□□□ -2.64
TNFP01375 SNORA40.9-201ENST00000515895 93 ntBASIC-1.44□□□□□ -2.64
TNFP01375 MTND4P7-201ENST00000523876 130 ntBASIC-1.44□□□□□ -2.64
TNFP01375 AL118558.2-201ENST00000556294 238 ntBASIC-1.44□□□□□ -2.64
TNFP01375 DLEU2_5.1-201ENST00000615567 84 ntBASIC-1.44□□□□□ -2.64
TNFP01375 Y_RNA.54-201ENST00000362766 105 ntBASIC-1.45□□□□□ -2.64
TNFP01375 Y_RNA.106-201ENST00000363189 100 ntBASIC-1.45□□□□□ -2.64
TNFP01375 Y_RNA.257-201ENST00000364596 102 ntBASIC-1.45□□□□□ -2.64
TNFP01375 Y_RNA.380-201ENST00000365663 111 ntBASIC-1.45□□□□□ -2.64
TNFP01375 Y_RNA.449-201ENST00000384187 102 ntBASIC-1.45□□□□□ -2.64
TNFP01375 Y_RNA.470-201ENST00000384307 117 ntBASIC-1.45□□□□□ -2.64
TNFP01375 RNU6ATAC29P-201ENST00000408088 125 ntBASIC-1.45□□□□□ -2.64
TNFP01375 MIR548H3-201ENST00000408771 118 ntBASIC-1.45□□□□□ -2.64
TNFP01375 AC113618.1-201ENST00000416747 285 ntBASIC-1.45□□□□□ -2.64
TNFP01375 AF228730.3-201ENST00000436691 102 ntBASIC-1.45□□□□□ -2.64
TNFP01375 AL356010.1-201ENST00000456364 102 ntBASIC-1.45□□□□□ -2.64
TNFP01375 RNU7-96P-201ENST00000459535 64 ntBASIC-1.45□□□□□ -2.64
TNFP01375 RNU7-175P-201ENST00000515915 61 ntBASIC-1.45□□□□□ -2.64
TNFP01375 SNORD67.1-201ENST00000516618 108 ntBASIC-1.45□□□□□ -2.64
TNFP01375 AC022140.2-201ENST00000623500 188 ntBASIC-1.45□□□□□ -2.64
TNFP01375 Y_RNA.171-201ENST00000363760 102 ntBASIC-1.46□□□□□ -2.64
TNFP01375 RNU6-214P-201ENST00000384130 107 ntBASIC-1.46□□□□□ -2.64
TNFP01375 Y_RNA.521-201ENST00000384560 114 ntBASIC-1.46□□□□□ -2.64
TNFP01375 RNU6-1257P-201ENST00000384625 110 ntBASIC-1.46□□□□□ -2.64
TNFP01375 AC096721.1-201ENST00000513540 552 ntTSL 4 BASIC-1.46□□□□□ -2.64
TNFP01375 AL358937.1-201ENST00000524512 336 ntTSL 2 BASIC-1.46□□□□□ -2.64
TNFP01375 MIR548AM-201ENST00000584298 74 ntBASIC-1.46□□□□□ -2.64
TNFP01375 VTRNA2-1-201ENST00000602301 127 ntBASIC-1.46□□□□□ -2.64
TNFP01375 AP003357.1-201ENST00000604497 148 ntBASIC-1.46□□□□□ -2.64
TNFP01375 AC004467.1-201ENST00000615678 330 ntBASIC-1.46□□□□□ -2.64
TNFP01375 AC007494.3-201ENST00000624660 743 ntBASIC-1.46□□□□□ -2.64
TNFP01375 AC006927.3-201ENST00000638789 384 ntBASIC-1.46□□□□□ -2.64
TNFP01375 Y_RNA.101-201ENST00000363154 102 ntBASIC-1.47□□□□□ -2.64
TNFP01375 Y_RNA.215-201ENST00000364204 112 ntBASIC-1.47□□□□□ -2.64
TNFP01375 Y_RNA.358-201ENST00000365491 99 ntBASIC-1.47□□□□□ -2.64
TNFP01375 RNU4-20P-201ENST00000365601 151 ntBASIC-1.47□□□□□ -2.64
TNFP01375 RNU6-400P-201ENST00000391173 106 ntBASIC-1.47□□□□□ -2.64
TNFP01375 AC073415.1-201ENST00000449240 153 ntBASIC-1.47□□□□□ -2.64
TNFP01375 RNU6-1038P-201ENST00000516516 104 ntBASIC-1.47□□□□□ -2.64
TNFP01375 RNU7-116P-201ENST00000516940 62 ntBASIC-1.47□□□□□ -2.64
TNFP01375 AP002963.1-201ENST00000530590 184 ntBASIC-1.47□□□□□ -2.64
TNFP01375 MIR3123-201ENST00000583417 75 ntBASIC-1.47□□□□□ -2.64
TNFP01375 AC092747.3-201ENST00000603769 301 ntBASIC-1.47□□□□□ -2.64
TNFP01375 AC009161.2-201ENST00000624626 138 ntBASIC-1.47□□□□□ -2.64
TNFP01375 CR2-207ENST00000640301 151 ntTSL 1 (best) BASIC-1.47□□□□□ -2.64
TNFP01375 MIR342-201ENST00000362212 99 ntBASIC-1.48□□□□□ -2.65
TNFP01375 SNORA22.1-201ENST00000362701 134 ntBASIC-1.48□□□□□ -2.65
TNFP01375 RNU6-82P-201ENST00000363970 107 ntBASIC-1.48□□□□□ -2.65
TNFP01375 RNU4-68P-201ENST00000364314 141 ntBASIC-1.48□□□□□ -2.65
TNFP01375 SNORD115-31-201ENST00000365318 82 ntBASIC-1.48□□□□□ -2.65
TNFP01375 RNU6-1310P-201ENST00000384153 107 ntBASIC-1.48□□□□□ -2.65
TNFP01375 SNORD61-201ENST00000384252 73 ntBASIC-1.48□□□□□ -2.65
TNFP01375 RNU6-790P-201ENST00000384479 105 ntBASIC-1.48□□□□□ -2.65
TNFP01375 Y_RNA.528-201ENST00000384575 108 ntBASIC-1.48□□□□□ -2.65
TNFP01375 Y_RNA.529-201ENST00000384586 119 ntBASIC-1.48□□□□□ -2.65
TNFP01375 MTND3P21-201ENST00000433774 331 ntBASIC-1.48□□□□□ -2.65
TNFP01375 AC107399.1-201ENST00000451226 265 ntBASIC-1.48□□□□□ -2.65
TNFP01375 Y_RNA.633-201ENST00000459107 95 ntBASIC-1.48□□□□□ -2.65
TNFP01375 AC092378.2-202ENST00000569328 445 ntTSL 3 BASIC-1.48□□□□□ -2.65
TNFP01375 MIR4723-201ENST00000585070 81 ntBASIC-1.48□□□□□ -2.65
TNFP01375 Y_RNA.802-201ENST00000614892 130 ntBASIC-1.48□□□□□ -2.65
TNFP01375 RNU6-990P-201ENST00000364385 104 ntBASIC-1.49□□□□□ -2.65
TNFP01375 Y_RNA.242-201ENST00000364473 110 ntBASIC-1.49□□□□□ -2.65
TNFP01375 RNU6-119P-201ENST00000364882 107 ntBASIC-1.49□□□□□ -2.65
TNFP01375 Y_RNA.310-201ENST00000365063 113 ntBASIC-1.49□□□□□ -2.65
TNFP01375 Y_RNA.315-201ENST00000365117 102 ntBASIC-1.49□□□□□ -2.65
TNFP01375 Y_RNA.486-201ENST00000384398 107 ntBASIC-1.49□□□□□ -2.65
TNFP01375 Y_RNA.559-201ENST00000384686 107 ntBASIC-1.49□□□□□ -2.65
TNFP01375 IL6ST-207ENST00000396816 168 ntTSL 1 (best) BASIC-1.49□□□□□ -2.65
TNFP01375 Y_RNA.591-201ENST00000410228 104 ntBASIC-1.49□□□□□ -2.65
TNFP01375 ZRANB2-AS2-201ENST00000411721 518 ntTSL 3 BASIC-1.49□□□□□ -2.65
TNFP01375 PMCHL1-202ENST00000423102 261 ntBASIC-1.49□□□□□ -2.65
TNFP01375 SNORA19.2-201ENST00000516013 114 ntBASIC-1.49□□□□□ -2.65
TNFP01375 RNU6-436P-201ENST00000516171 114 ntBASIC-1.49□□□□□ -2.65
TNFP01375 AC107973.1-201ENST00000530249 576 ntTSL 4 BASIC-1.49□□□□□ -2.65
TNFP01375 MIR4500-201ENST00000579472 76 ntBASIC-1.49□□□□□ -2.65
TNFP01375 MIR4999-201ENST00000585029 91 ntBASIC-1.49□□□□□ -2.65
TNFP01375 Y_RNA.804-201ENST00000615262 101 ntBASIC-1.49□□□□□ -2.65
TNFP01375 Y_RNA.188-201ENST00000363952 111 ntBASIC-1.5□□□□□ -2.65
TNFP01375 Y_RNA.248-201ENST00000364501 109 ntBASIC-1.5□□□□□ -2.65
TNFP01375 RNU6-1163P-201ENST00000364516 107 ntBASIC-1.5□□□□□ -2.65
TNFP01375 RNU6-563P-201ENST00000364872 108 ntBASIC-1.5□□□□□ -2.65
TNFP01375 Y_RNA.378-201ENST00000365652 113 ntBASIC-1.5□□□□□ -2.65
TNFP01375 RNU6-128P-201ENST00000383976 107 ntBASIC-1.5□□□□□ -2.65
TNFP01375 Y_RNA.421-201ENST00000384052 101 ntBASIC-1.5□□□□□ -2.65
TNFP01375 RNU6-1321P-201ENST00000390905 107 ntBASIC-1.5□□□□□ -2.65
TNFP01375 RNU6-695P-201ENST00000391157 104 ntBASIC-1.5□□□□□ -2.65
TNFP01375 AL606923.1-201ENST00000406616 190 ntBASIC-1.5□□□□□ -2.65
TNFP01375 AJ239322.2-201ENST00000421696 575 ntTSL 5 BASIC-1.5□□□□□ -2.65
TNFP01375 AL353691.2-201ENST00000443795 59 ntBASIC-1.5□□□□□ -2.65
TNFP01375 MTND3P16-201ENST00000452205 344 ntBASIC-1.5□□□□□ -2.65
TNFP01375 RNU1-54P-201ENST00000517181 120 ntBASIC-1.5□□□□□ -2.65
TNFP01375 AC138625.1-201ENST00000567556 483 ntTSL 3 BASIC-1.5□□□□□ -2.65
TNFP01375 AC006504.6-201ENST00000590142 199 ntBASIC-1.5□□□□□ -2.65
TNFP01375 AC245884.10-201ENST00000597355 337 ntBASIC-1.5□□□□□ -2.65
TNFP01375 TARS-215ENST00000626210 201 ntTSL 5 BASIC-1.5□□□□□ -2.65
TNFP01375 RNU6-500P-201ENST00000362349 107 ntBASIC-1.51□□□□□ -2.65
Retrieved 100 of 98,524 protein–RNA pairs in 178.2 ms