Protein–RNA interactions for Protein: P00558

PGK1, Phosphoglycerate kinase 1, humanhuman

Predictions only

Length 417 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PGK1P00558 RNU2-4P-201ENST00000606190 192 ntBASIC0.5□□□□□ -2.33
PGK1P00558 MIR6717-201ENST00000622747 73 ntBASIC0.5□□□□□ -2.33
PGK1P00558 MIR6841-201ENST00000637129 72 ntBASIC0.5□□□□□ -2.33
PGK1P00558 SAMD9-203ENST00000620985 6754 ntAPPRIS P1 TSL 2 BASIC0.49□□□□□ -2.33
PGK1P00558 Y_RNA.60-201ENST00000362831 98 ntBASIC0.49□□□□□ -2.33
PGK1P00558 RNU6-923P-201ENST00000364753 107 ntBASIC0.49□□□□□ -2.33
PGK1P00558 Y_RNA.350-201ENST00000365409 98 ntBASIC0.49□□□□□ -2.33
PGK1P00558 RNU6-1292P-201ENST00000383856 107 ntBASIC0.49□□□□□ -2.33
PGK1P00558 RNU6-945P-201ENST00000383947 107 ntBASIC0.49□□□□□ -2.33
PGK1P00558 RNU6-578P-201ENST00000390980 103 ntBASIC0.49□□□□□ -2.33
PGK1P00558 AC004148.1-201ENST00000571506 398 ntTSL 5 BASIC0.49□□□□□ -2.33
PGK1P00558 MIR4514-201ENST00000581410 57 ntBASIC0.49□□□□□ -2.33
PGK1P00558 Z83818.1-201ENST00000603584 150 ntBASIC0.49□□□□□ -2.33
PGK1P00558 AC008608.1-201ENST00000603910 127 ntBASIC0.49□□□□□ -2.33
PGK1P00558 5S_rRNA.15-201ENST00000611169 127 ntBASIC0.49□□□□□ -2.33
PGK1P00558 C9orf84-203ENST00000374287 4721 ntAPPRIS P3 TSL 5 BASIC0.49□□□□□ -2.33
PGK1P00558 Y_RNA.556-201ENST00000384677 113 ntBASIC0.48□□□□□ -2.33
PGK1P00558 RNA5SP222-201ENST00000411039 105 ntBASIC0.48□□□□□ -2.33
PGK1P00558 Y_RNA.626-201ENST00000411288 95 ntBASIC0.48□□□□□ -2.33
PGK1P00558 AL121914.1-201ENST00000450188 156 ntBASIC0.48□□□□□ -2.33
PGK1P00558 MIR18B-201ENST00000454574 71 ntBASIC0.48□□□□□ -2.33
PGK1P00558 SCARNA15-202ENST00000516881 127 ntBASIC0.48□□□□□ -2.33
PGK1P00558 AC010177.1-201ENST00000547819 366 ntTSL 3 BASIC0.48□□□□□ -2.33
PGK1P00558 AC099654.10-201ENST00000640395 161 ntBASIC0.48□□□□□ -2.33
PGK1P00558 Y_RNA.162-201ENST00000363683 102 ntBASIC0.47□□□□□ -2.33
PGK1P00558 SNORD18A-201ENST00000363753 72 ntBASIC0.47□□□□□ -2.33
PGK1P00558 Y_RNA.351-201ENST00000365436 96 ntBASIC0.47□□□□□ -2.33
PGK1P00558 Y_RNA.571-201ENST00000384753 98 ntBASIC0.47□□□□□ -2.33
PGK1P00558 SNORA79-201ENST00000408376 140 ntBASIC0.47□□□□□ -2.33
PGK1P00558 AL118496.2-201ENST00000448300 230 ntBASIC0.47□□□□□ -2.33
PGK1P00558 AC012668.1-201ENST00000457625 228 ntTSL 3 BASIC0.47□□□□□ -2.33
PGK1P00558 RNU7-56P-201ENST00000458744 62 ntBASIC0.47□□□□□ -2.33
PGK1P00558 RNU7-185P-201ENST00000459215 60 ntBASIC0.47□□□□□ -2.33
PGK1P00558 AC137770.1-201ENST00000504620 530 ntTSL 3 BASIC0.47□□□□□ -2.33
PGK1P00558 RNU6-1045P-201ENST00000516321 107 ntBASIC0.47□□□□□ -2.33
PGK1P00558 MIR3128-201ENST00000581957 66 ntBASIC0.47□□□□□ -2.33
PGK1P00558 HOXA11-AS1_6.1-201ENST00000620092 179 ntBASIC0.47□□□□□ -2.33
PGK1P00558 Y_RNA.65-201ENST00000362846 100 ntBASIC0.46□□□□□ -2.34
PGK1P00558 Y_RNA.121-201ENST00000363309 113 ntBASIC0.46□□□□□ -2.34
PGK1P00558 RPS27-201ENST00000368567 350 ntAPPRIS P1 TSL 1 (best) BASIC0.46□□□□□ -2.34
PGK1P00558 RNU6-643P-201ENST00000384018 107 ntBASIC0.46□□□□□ -2.34
PGK1P00558 SEPT7P4-201ENST00000437076 306 ntBASIC0.46□□□□□ -2.34
PGK1P00558 MTND3P2-201ENST00000438452 342 ntBASIC0.46□□□□□ -2.34
PGK1P00558 IGHVIII-67-2-201ENST00000519849 88 ntBASIC0.46□□□□□ -2.34
PGK1P00558 MIR3612-201ENST00000579753 87 ntBASIC0.46□□□□□ -2.34
PGK1P00558 MIR378D2-201ENST00000580636 98 ntBASIC0.46□□□□□ -2.34
PGK1P00558 MIR4719-201ENST00000585233 84 ntBASIC0.46□□□□□ -2.34
PGK1P00558 AC062037.2-201ENST00000610137 73 ntBASIC0.46□□□□□ -2.34
PGK1P00558 AL596211.1-201ENST00000569873 2277 ntBASIC0.45□□□□□ -2.34
PGK1P00558 MIR18A-201ENST00000362310 71 ntBASIC0.45□□□□□ -2.34
PGK1P00558 RNA5SP62-201ENST00000363457 110 ntBASIC0.45□□□□□ -2.34
PGK1P00558 Y_RNA.412-201ENST00000384001 104 ntBASIC0.45□□□□□ -2.34
PGK1P00558 SNORA36.2-201ENST00000384004 127 ntBASIC0.45□□□□□ -2.34
PGK1P00558 Y_RNA.430-201ENST00000384081 110 ntBASIC0.45□□□□□ -2.34
PGK1P00558 MIR125B2-201ENST00000385128 89 ntBASIC0.45□□□□□ -2.34
PGK1P00558 MIR140-201ENST00000385282 100 ntBASIC0.45□□□□□ -2.34
PGK1P00558 MT-TF-201ENST00000387314 71 ntBASIC0.45□□□□□ -2.34
PGK1P00558 MIR938-201ENST00000401216 83 ntBASIC0.45□□□□□ -2.34
PGK1P00558 MIR1257-201ENST00000408490 117 ntBASIC0.45□□□□□ -2.34
PGK1P00558 Y_RNA.618-201ENST00000410949 107 ntBASIC0.45□□□□□ -2.34
PGK1P00558 SNORD116-25-201ENST00000516517 92 ntBASIC0.45□□□□□ -2.34
PGK1P00558 MIR4503-201ENST00000582187 83 ntBASIC0.45□□□□□ -2.34
PGK1P00558 AL662814.1-201ENST00000617364 121 ntBASIC0.45□□□□□ -2.34
PGK1P00558 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.44□□□□□ -2.34
PGK1P00558 DEFB131A-201ENST00000334879 213 ntAPPRIS P1 TSL 1 (best) BASIC0.44□□□□□ -2.34
PGK1P00558 Y_RNA.182-201ENST00000363880 111 ntBASIC0.44□□□□□ -2.34
PGK1P00558 Y_RNA.193-201ENST00000363979 102 ntBASIC0.44□□□□□ -2.34
PGK1P00558 RNU6-275P-201ENST00000364910 107 ntBASIC0.44□□□□□ -2.34
PGK1P00558 Y_RNA.307-201ENST00000365022 117 ntBASIC0.44□□□□□ -2.34
PGK1P00558 RNU6-1336P-201ENST00000383886 109 ntBASIC0.44□□□□□ -2.34
PGK1P00558 RNU6-574P-201ENST00000384265 107 ntBASIC0.44□□□□□ -2.34
PGK1P00558 RNU6-1237P-201ENST00000384777 107 ntBASIC0.44□□□□□ -2.34
PGK1P00558 MIR624-201ENST00000385217 97 ntBASIC0.44□□□□□ -2.34
PGK1P00558 RNU6-1319P-201ENST00000390855 104 ntBASIC0.44□□□□□ -2.34
PGK1P00558 RNU6-747P-201ENST00000390928 104 ntBASIC0.44□□□□□ -2.34
PGK1P00558 RNU6-241P-201ENST00000391148 104 ntBASIC0.44□□□□□ -2.34
PGK1P00558 MIR1302-3-201ENST00000408128 138 ntBASIC0.44□□□□□ -2.34
PGK1P00558 RNU7-102P-201ENST00000458948 62 ntBASIC0.44□□□□□ -2.34
PGK1P00558 RNU6-1023P-201ENST00000516137 106 ntBASIC0.44□□□□□ -2.34
PGK1P00558 RNU6-1149P-201ENST00000516810 97 ntBASIC0.44□□□□□ -2.34
PGK1P00558 RNU6-111P-201ENST00000517179 105 ntBASIC0.44□□□□□ -2.34
PGK1P00558 MRPS18CP4-201ENST00000535821 231 ntBASIC0.44□□□□□ -2.34
PGK1P00558 AC090897.1-201ENST00000580909 226 ntBASIC0.44□□□□□ -2.34
PGK1P00558 SNORD92-201ENST00000585078 85 ntBASIC0.44□□□□□ -2.34
PGK1P00558 MIR302B-201ENST00000362188 73 ntBASIC0.43□□□□□ -2.34
PGK1P00558 Y_RNA.447-201ENST00000384184 113 ntBASIC0.43□□□□□ -2.34
PGK1P00558 Y_RNA.478-201ENST00000384358 107 ntBASIC0.43□□□□□ -2.34
PGK1P00558 RNU6-918P-201ENST00000391219 106 ntBASIC0.43□□□□□ -2.34
PGK1P00558 SNORD100-201ENST00000408573 76 ntBASIC0.43□□□□□ -2.34
PGK1P00558 AC096949.1-201ENST00000412047 152 ntBASIC0.43□□□□□ -2.34
PGK1P00558 RNU7-80P-201ENST00000459562 61 ntBASIC0.43□□□□□ -2.34
PGK1P00558 Y_RNA.797-201ENST00000515977 94 ntBASIC0.43□□□□□ -2.34
PGK1P00558 RNU4-71P-201ENST00000516258 113 ntBASIC0.43□□□□□ -2.34
PGK1P00558 U4.1-201ENST00000620349 87 ntBASIC0.43□□□□□ -2.34
PGK1P00558 OMD-201ENST00000375550 2449 ntAPPRIS P1 TSL 1 (best) BASIC0.42□□□□□ -2.34
PGK1P00558 Y_RNA.42-201ENST00000362660 108 ntBASIC0.42□□□□□ -2.34
PGK1P00558 Y_RNA.454-201ENST00000384224 113 ntBASIC0.42□□□□□ -2.34
PGK1P00558 AC007991.2-201ENST00000520185 102 ntTSL 5 BASIC0.42□□□□□ -2.34
PGK1P00558 MIR8066-201ENST00000617280 78 ntBASIC0.42□□□□□ -2.34
PGK1P00558 AC021613.1-201ENST00000623880 111 ntBASIC0.42□□□□□ -2.34
Retrieved 100 of 98,524 protein–RNA pairs in 130.5 ms