Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 Y_RNA.440-201ENST00000384120 114 ntBASIC0.45□□□□□ -2.34
SIX3O95343 Y_RNA.454-201ENST00000384224 113 ntBASIC0.45□□□□□ -2.34
SIX3O95343 Y_RNA.461-201ENST00000384263 103 ntBASIC0.45□□□□□ -2.34
SIX3O95343 Y_RNA.512-201ENST00000384518 102 ntBASIC0.45□□□□□ -2.34
SIX3O95343 SNORA20-201ENST00000384662 132 ntBASIC0.45□□□□□ -2.34
SIX3O95343 SNORD12C-201ENST00000386307 89 ntBASIC0.45□□□□□ -2.34
SIX3O95343 TRAJ2-201ENST00000390535 66 ntAPPRIS P1 BASIC0.45□□□□□ -2.34
SIX3O95343 Y_RNA.610-201ENST00000410681 103 ntBASIC0.45□□□□□ -2.34
SIX3O95343 RNU6-1190P-201ENST00000410811 104 ntBASIC0.45□□□□□ -2.34
SIX3O95343 SNRPGP8-201ENST00000454064 226 ntBASIC0.45□□□□□ -2.34
SIX3O95343 RNU7-80P-201ENST00000459562 61 ntBASIC0.45□□□□□ -2.34
SIX3O95343 RN7SKP12-201ENST00000516275 143 ntBASIC0.45□□□□□ -2.34
SIX3O95343 uc_338.6-201ENST00000613544 171 ntBASIC0.45□□□□□ -2.34
SIX3O95343 AP001282.2-201ENST00000616149 309 ntBASIC0.45□□□□□ -2.34
SIX3O95343 RNA5SP117-201ENST00000365294 118 ntBASIC0.44□□□□□ -2.34
SIX3O95343 MT-TF-201ENST00000387314 71 ntBASIC0.44□□□□□ -2.34
SIX3O95343 SNORD71-201ENST00000411292 86 ntBASIC0.44□□□□□ -2.34
SIX3O95343 AL136320.1-201ENST00000417273 430 ntTSL 3 BASIC0.44□□□□□ -2.34
SIX3O95343 RNU7-102P-201ENST00000458948 62 ntBASIC0.44□□□□□ -2.34
SIX3O95343 MTATP8P1-201ENST00000467115 207 ntBASIC0.44□□□□□ -2.34
SIX3O95343 RNU6-1153P-201ENST00000516760 105 ntBASIC0.44□□□□□ -2.34
SIX3O95343 RNU6-453P-201ENST00000516819 85 ntBASIC0.44□□□□□ -2.34
SIX3O95343 MIR3129-201ENST00000581095 76 ntBASIC0.44□□□□□ -2.34
SIX3O95343 AC006504.6-201ENST00000590142 199 ntBASIC0.44□□□□□ -2.34
SIX3O95343 AC108676.2-201ENST00000605225 163 ntBASIC0.44□□□□□ -2.34
SIX3O95343 AL596211.1-201ENST00000569873 2277 ntBASIC0.43□□□□□ -2.34
SIX3O95343 Y_RNA.82-201ENST00000363000 102 ntBASIC0.43□□□□□ -2.34
SIX3O95343 Y_RNA.92-201ENST00000363043 102 ntBASIC0.43□□□□□ -2.34
SIX3O95343 snoU2_19.4-201ENST00000364329 80 ntBASIC0.43□□□□□ -2.34
SIX3O95343 Y_RNA.235-201ENST00000364412 102 ntBASIC0.43□□□□□ -2.34
SIX3O95343 Y_RNA.306-201ENST00000365015 102 ntBASIC0.43□□□□□ -2.34
SIX3O95343 Y_RNA.312-201ENST00000365089 102 ntBASIC0.43□□□□□ -2.34
SIX3O95343 Y_RNA.322-201ENST00000365151 102 ntBASIC0.43□□□□□ -2.34
SIX3O95343 RNU4-17P-201ENST00000365598 141 ntBASIC0.43□□□□□ -2.34
SIX3O95343 SNORD93-201ENST00000408813 74 ntBASIC0.43□□□□□ -2.34
SIX3O95343 Y_RNA.650-201ENST00000459002 102 ntBASIC0.43□□□□□ -2.34
SIX3O95343 SNORA25.12-201ENST00000516202 82 ntBASIC0.43□□□□□ -2.34
SIX3O95343 Y_RNA.777-201ENST00000516982 102 ntBASIC0.43□□□□□ -2.34
SIX3O95343 MIR3152-201ENST00000579801 74 ntBASIC0.43□□□□□ -2.34
SIX3O95343 Y_RNA.771-201ENST00000598668 102 ntBASIC0.43□□□□□ -2.34
SIX3O95343 AL365265.1-201ENST00000621045 234 ntBASIC0.43□□□□□ -2.34
SIX3O95343 uc_338.16-201ENST00000621804 95 ntBASIC0.43□□□□□ -2.34
SIX3O95343 Y_RNA.789-201ENST00000622480 102 ntBASIC0.43□□□□□ -2.34
SIX3O95343 RNU6-1227P-201ENST00000383981 107 ntBASIC0.42□□□□□ -2.34
SIX3O95343 RNU6-1126P-201ENST00000384002 107 ntBASIC0.42□□□□□ -2.34
SIX3O95343 Y_RNA.552-201ENST00000384665 112 ntBASIC0.42□□□□□ -2.34
SIX3O95343 MIR604-201ENST00000384880 94 ntBASIC0.42□□□□□ -2.34
SIX3O95343 RNU6-651P-201ENST00000411040 105 ntBASIC0.42□□□□□ -2.34
SIX3O95343 AC114737.2-201ENST00000421583 173 ntBASIC0.42□□□□□ -2.34
SIX3O95343 AL442663.2-201ENST00000554385 511 ntBASIC0.42□□□□□ -2.34
SIX3O95343 MIR4305-201ENST00000583252 102 ntBASIC0.42□□□□□ -2.34
SIX3O95343 TTC28-AS1_2.1-201ENST00000611117 157 ntBASIC0.42□□□□□ -2.34
SIX3O95343 MIR335-201ENST00000362173 94 ntBASIC0.41□□□□□ -2.34
SIX3O95343 Y_RNA.262-201ENST00000364641 102 ntBASIC0.41□□□□□ -2.34
SIX3O95343 Y_RNA.416-201ENST00000384014 113 ntBASIC0.41□□□□□ -2.34
SIX3O95343 SNORA1-201ENST00000384107 130 ntBASIC0.41□□□□□ -2.34
SIX3O95343 SEPT7P4-201ENST00000437076 306 ntBASIC0.41□□□□□ -2.34
SIX3O95343 MTCYBP6-201ENST00000441810 138 ntBASIC0.41□□□□□ -2.34
SIX3O95343 SNORD2.1-201ENST00000458762 69 ntBASIC0.41□□□□□ -2.34
SIX3O95343 RNU7-45P-201ENST00000459460 63 ntBASIC0.41□□□□□ -2.34
SIX3O95343 Y_RNA.720-201ENST00000517166 92 ntBASIC0.41□□□□□ -2.34
SIX3O95343 MIR6717-201ENST00000622747 73 ntBASIC0.41□□□□□ -2.34
SIX3O95343 Y_RNA.542-201ENST00000384641 111 ntBASIC0.4□□□□□ -2.35
SIX3O95343 Y_RNA.618-201ENST00000410949 107 ntBASIC0.4□□□□□ -2.35
SIX3O95343 AC090897.1-201ENST00000580909 226 ntBASIC0.4□□□□□ -2.35
SIX3O95343 MIR4493-201ENST00000584016 73 ntBASIC0.4□□□□□ -2.35
SIX3O95343 5S_rRNA.15-201ENST00000611169 127 ntBASIC0.4□□□□□ -2.35
SIX3O95343 Y_RNA.23-201ENST00000362496 106 ntBASIC0.39□□□□□ -2.35
SIX3O95343 Y_RNA.176-201ENST00000363815 109 ntBASIC0.39□□□□□ -2.35
SIX3O95343 SNORD95.1-201ENST00000364099 68 ntBASIC0.39□□□□□ -2.35
SIX3O95343 SNORA50A-201ENST00000384225 134 ntBASIC0.39□□□□□ -2.35
SIX3O95343 AL121914.1-201ENST00000450188 156 ntBASIC0.39□□□□□ -2.35
SIX3O95343 Y_RNA.644-201ENST00000459006 113 ntBASIC0.39□□□□□ -2.35
SIX3O95343 RNU6-469P-201ENST00000516253 101 ntBASIC0.39□□□□□ -2.35
SIX3O95343 AC097639.2-201ENST00000603159 172 ntBASIC0.39□□□□□ -2.35
SIX3O95343 AC008608.1-201ENST00000603910 127 ntBASIC0.39□□□□□ -2.35
SIX3O95343 MIR8062-201ENST00000621515 85 ntBASIC0.39□□□□□ -2.35
SIX3O95343 SYCP2-202ENST00000371001 5479 ntAPPRIS P2 TSL 1 (best) BASIC0.39□□□□□ -2.35
SIX3O95343 SNORD18A-201ENST00000363753 72 ntBASIC0.38□□□□□ -2.35
SIX3O95343 Y_RNA.483-201ENST00000384380 101 ntBASIC0.38□□□□□ -2.35
SIX3O95343 RNU4-83P-201ENST00000410863 133 ntBASIC0.38□□□□□ -2.35
SIX3O95343 SNORA68.3-201ENST00000515906 83 ntBASIC0.38□□□□□ -2.35
SIX3O95343 RNU6-448P-201ENST00000517052 107 ntBASIC0.38□□□□□ -2.35
SIX3O95343 AP003072.1-201ENST00000531740 145 ntBASIC0.38□□□□□ -2.35
SIX3O95343 MIR5190-201ENST00000581537 80 ntBASIC0.38□□□□□ -2.35
SIX3O95343 SNORD92-201ENST00000585078 85 ntBASIC0.38□□□□□ -2.35
SIX3O95343 MIR6718-201ENST00000616153 80 ntBASIC0.38□□□□□ -2.35
SIX3O95343 KIF20B-201ENST00000260753 6306 ntAPPRIS P3 TSL 1 (best) BASIC0.38□□□□□ -2.35
SIX3O95343 RNU6-653P-201ENST00000363074 106 ntBASIC0.37□□□□□ -2.35
SIX3O95343 SNORA63-201ENST00000363450 132 ntBASIC0.37□□□□□ -2.35
SIX3O95343 RNU6-103P-201ENST00000363686 107 ntBASIC0.37□□□□□ -2.35
SIX3O95343 SNORD100-201ENST00000408573 76 ntBASIC0.37□□□□□ -2.35
SIX3O95343 AL135790.1-201ENST00000427161 157 ntTSL 3 BASIC0.37□□□□□ -2.35
SIX3O95343 AC002350.1-201ENST00000490759 375 ntBASIC0.37□□□□□ -2.35
SIX3O95343 MIR5197-201ENST00000583721 112 ntBASIC0.37□□□□□ -2.35
SIX3O95343 AC091932.4-201ENST00000623386 200 ntBASIC0.37□□□□□ -2.35
SIX3O95343 CCDC7-215ENST00000639629 4158 ntAPPRIS ALT2 TSL 5 BASIC0.36□□□□□ -2.35
SIX3O95343 RNU6-403P-201ENST00000363163 104 ntBASIC0.36□□□□□ -2.35
SIX3O95343 Y_RNA.574-201ENST00000384766 95 ntBASIC0.36□□□□□ -2.35
SIX3O95343 RNU6-381P-201ENST00000391259 108 ntBASIC0.36□□□□□ -2.35
Retrieved 100 of 98,524 protein–RNA pairs in 131 ms