Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 AC090844.1-201ENST00000422019 156 ntBASIC1.24□□□□□ -2.21
LMX1BO60663 AL512326.2-201ENST00000426359 151 ntBASIC1.24□□□□□ -2.21
LMX1BO60663 COX6CP6-201ENST00000490840 228 ntBASIC1.24□□□□□ -2.21
LMX1BO60663 RNU7-53P-201ENST00000516705 60 ntBASIC1.24□□□□□ -2.21
LMX1BO60663 AP003716.2-201ENST00000528260 108 ntBASIC1.24□□□□□ -2.21
LMX1BO60663 MIR4452-201ENST00000583004 71 ntBASIC1.24□□□□□ -2.21
LMX1BO60663 SNORA4-201ENST00000584302 138 ntBASIC1.24□□□□□ -2.21
LMX1BO60663 AL353770.2-201ENST00000620024 78 ntBASIC1.24□□□□□ -2.21
LMX1BO60663 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC1.23□□□□□ -2.21
LMX1BO60663 KTN1-205ENST00000395314 4618 ntAPPRIS P4 TSL 1 (best) BASIC1.23□□□□□ -2.21
LMX1BO60663 Y_RNA.171-201ENST00000363760 102 ntBASIC1.23□□□□□ -2.21
LMX1BO60663 Y_RNA.198-201ENST00000364013 98 ntBASIC1.23□□□□□ -2.21
LMX1BO60663 Y_RNA.346-201ENST00000365385 112 ntBASIC1.23□□□□□ -2.21
LMX1BO60663 Y_RNA.430-201ENST00000384081 110 ntBASIC1.23□□□□□ -2.21
LMX1BO60663 SNORA70.7-201ENST00000384159 133 ntBASIC1.23□□□□□ -2.21
LMX1BO60663 AC027119.1-201ENST00000440877 241 ntBASIC1.23□□□□□ -2.21
LMX1BO60663 snoU13.9-201ENST00000458927 103 ntBASIC1.23□□□□□ -2.21
LMX1BO60663 RNU1-123P-201ENST00000458950 160 ntBASIC1.23□□□□□ -2.21
LMX1BO60663 RNU1-98P-201ENST00000458992 160 ntBASIC1.23□□□□□ -2.21
LMX1BO60663 RNU7-164P-201ENST00000459221 62 ntBASIC1.23□□□□□ -2.21
LMX1BO60663 snoU13.16-201ENST00000459350 104 ntBASIC1.23□□□□□ -2.21
LMX1BO60663 RNU6-322P-201ENST00000516010 103 ntBASIC1.23□□□□□ -2.21
LMX1BO60663 RNU6-589P-201ENST00000516485 107 ntBASIC1.23□□□□□ -2.21
LMX1BO60663 RNU6-165P-201ENST00000517170 99 ntBASIC1.23□□□□□ -2.21
LMX1BO60663 AC007991.3-201ENST00000517623 502 ntTSL 4 BASIC1.23□□□□□ -2.21
LMX1BO60663 AL078603.1-201ENST00000603824 313 ntBASIC1.23□□□□□ -2.21
LMX1BO60663 AL670379.3-201ENST00000605040 251 ntBASIC1.23□□□□□ -2.21
LMX1BO60663 Z97988.1-201ENST00000637697 135 ntBASIC1.23□□□□□ -2.21
LMX1BO60663 LMBR1-222ENST00000638959 93 ntTSL 5 BASIC1.23□□□□□ -2.21
LMX1BO60663 AP000648.3-201ENST00000623539 4507 ntBASIC1.22□□□□□ -2.21
LMX1BO60663 MIR302B-201ENST00000362188 73 ntBASIC1.22□□□□□ -2.21
LMX1BO60663 Y_RNA.35-201ENST00000362601 101 ntBASIC1.22□□□□□ -2.21
LMX1BO60663 RNU6-1056P-201ENST00000383996 107 ntBASIC1.22□□□□□ -2.21
LMX1BO60663 RNU6-42P-201ENST00000384165 107 ntBASIC1.22□□□□□ -2.21
LMX1BO60663 RNY4P18-201ENST00000391107 89 ntBASIC1.22□□□□□ -2.21
LMX1BO60663 HSPE1P24-201ENST00000450782 238 ntBASIC1.22□□□□□ -2.21
LMX1BO60663 MIR1270-201ENST00000459320 83 ntBASIC1.22□□□□□ -2.21
LMX1BO60663 AC004812.1-201ENST00000540773 146 ntBASIC1.22□□□□□ -2.21
LMX1BO60663 GHRLOS.1-201ENST00000610995 70 ntBASIC1.22□□□□□ -2.21
LMX1BO60663 MIR6078-201ENST00000611069 100 ntBASIC1.22□□□□□ -2.21
LMX1BO60663 MIR8063-201ENST00000621930 81 ntBASIC1.22□□□□□ -2.21
LMX1BO60663 AC068733.3-201ENST00000632757 269 ntTSL 3 BASIC1.22□□□□□ -2.21
LMX1BO60663 SENP7-201ENST00000314261 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC1.22□□□□□ -2.21
LMX1BO60663 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC1.21□□□□□ -2.22
LMX1BO60663 SNORD115-2-201ENST00000362842 82 ntBASIC1.21□□□□□ -2.22
LMX1BO60663 SNORD115-20-201ENST00000365099 82 ntBASIC1.21□□□□□ -2.22
LMX1BO60663 Y_RNA.470-201ENST00000384307 117 ntBASIC1.21□□□□□ -2.22
LMX1BO60663 Y_RNA.531-201ENST00000384589 121 ntBASIC1.21□□□□□ -2.22
LMX1BO60663 MIR548A1-201ENST00000385041 97 ntBASIC1.21□□□□□ -2.22
LMX1BO60663 AC063976.4-201ENST00000421971 163 ntBASIC1.21□□□□□ -2.22
LMX1BO60663 Y_RNA.649-201ENST00000459077 103 ntBASIC1.21□□□□□ -2.22
LMX1BO60663 RNA5SP220-201ENST00000516298 104 ntBASIC1.21□□□□□ -2.22
LMX1BO60663 SNORD111.1-201ENST00000516421 86 ntBASIC1.21□□□□□ -2.22
LMX1BO60663 RNA5SP102-201ENST00000516865 106 ntBASIC1.21□□□□□ -2.22
LMX1BO60663 IGLVVI-22-1-201ENST00000521183 211 ntBASIC1.21□□□□□ -2.22
LMX1BO60663 MTND5P34-201ENST00000568888 325 ntBASIC1.21□□□□□ -2.22
LMX1BO60663 PRELID3BP2-201ENST00000605362 201 ntBASIC1.21□□□□□ -2.22
LMX1BO60663 TRAJ36-201ENST00000614481 58 ntAPPRIS P1 BASIC1.21□□□□□ -2.22
LMX1BO60663 MIR7974-201ENST00000615835 79 ntBASIC1.21□□□□□ -2.22
LMX1BO60663 MIR8065-201ENST00000620577 100 ntBASIC1.21□□□□□ -2.22
LMX1BO60663 MIR4251-201ENST00000635819 61 ntBASIC1.21□□□□□ -2.22
LMX1BO60663 SNORA22.1-201ENST00000362701 134 ntBASIC1.2□□□□□ -2.22
LMX1BO60663 Y_RNA.81-201ENST00000362997 102 ntBASIC1.2□□□□□ -2.22
LMX1BO60663 RNU6-44P-201ENST00000384045 107 ntBASIC1.2□□□□□ -2.22
LMX1BO60663 Y_RNA.549-201ENST00000384657 102 ntBASIC1.2□□□□□ -2.22
LMX1BO60663 RNU6-1067P-201ENST00000384752 107 ntBASIC1.2□□□□□ -2.22
LMX1BO60663 MIR548A3-201ENST00000385297 97 ntBASIC1.2□□□□□ -2.22
LMX1BO60663 RNU6-602P-201ENST00000411155 105 ntBASIC1.2□□□□□ -2.22
LMX1BO60663 RPS27P16-201ENST00000425758 201 ntBASIC1.2□□□□□ -2.22
LMX1BO60663 RNU6-919P-201ENST00000516731 104 ntBASIC1.2□□□□□ -2.22
LMX1BO60663 Y_RNA.709-201ENST00000516952 92 ntBASIC1.2□□□□□ -2.22
LMX1BO60663 AC019176.1-201ENST00000518519 225 ntBASIC1.2□□□□□ -2.22
LMX1BO60663 AC068338.1-201ENST00000565567 176 ntBASIC1.2□□□□□ -2.22
LMX1BO60663 MIR3664-201ENST00000579074 99 ntBASIC1.2□□□□□ -2.22
LMX1BO60663 MIR6734-201ENST00000621166 68 ntBASIC1.2□□□□□ -2.22
LMX1BO60663 AL391516.1-201ENST00000554380 2449 ntBASIC1.2□□□□□ -2.22
LMX1BO60663 SNORD116-21-201ENST00000384507 92 ntBASIC1.19□□□□□ -2.22
LMX1BO60663 RNU1-78P-201ENST00000391248 165 ntBASIC1.19□□□□□ -2.22
LMX1BO60663 AL035461.1-201ENST00000421490 332 ntBASIC1.19□□□□□ -2.22
LMX1BO60663 AC244023.1-201ENST00000426884 112 ntBASIC1.19□□□□□ -2.22
LMX1BO60663 AC079140.2-201ENST00000506193 142 ntBASIC1.19□□□□□ -2.22
LMX1BO60663 AC242498.1-201ENST00000604134 111 ntBASIC1.19□□□□□ -2.22
LMX1BO60663 AC087741.2-201ENST00000619415 172 ntBASIC1.19□□□□□ -2.22
LMX1BO60663 AL035470.1-201ENST00000622571 220 ntBASIC1.19□□□□□ -2.22
LMX1BO60663 UGP2-230ENST00000626380 276 ntTSL 5 BASIC1.19□□□□□ -2.22
LMX1BO60663 SNORA1.1-201ENST00000364671 133 ntBASIC1.18□□□□□ -2.22
LMX1BO60663 MIR1185-1-201ENST00000408598 86 ntBASIC1.18□□□□□ -2.22
LMX1BO60663 AL031386.1-201ENST00000411940 142 ntTSL 5 BASIC1.18□□□□□ -2.22
LMX1BO60663 AC073127.1-201ENST00000447336 333 ntTSL 3 BASIC1.18□□□□□ -2.22
LMX1BO60663 RPS23P4-201ENST00000487908 423 ntBASIC1.18□□□□□ -2.22
LMX1BO60663 AC113410.1-201ENST00000505029 247 ntBASIC1.18□□□□□ -2.22
LMX1BO60663 AL512310.8-201ENST00000550183 120 ntBASIC1.18□□□□□ -2.22
LMX1BO60663 AC007012.1-201ENST00000567192 175 ntBASIC1.18□□□□□ -2.22
LMX1BO60663 MIR3152-201ENST00000579801 74 ntBASIC1.18□□□□□ -2.22
LMX1BO60663 AL357312.1-201ENST00000603879 298 ntBASIC1.18□□□□□ -2.22
LMX1BO60663 AL121890.5-201ENST00000620848 304 ntBASIC1.18□□□□□ -2.22
LMX1BO60663 AL161722.3-201ENST00000605789 2983 ntBASIC1.18□□□□□ -2.22
LMX1BO60663 SNORA25.3-201ENST00000363205 127 ntBASIC1.17□□□□□ -2.22
LMX1BO60663 Y_RNA.281-201ENST00000364774 94 ntBASIC1.17□□□□□ -2.22
LMX1BO60663 Y_RNA.344-201ENST00000365381 112 ntBASIC1.17□□□□□ -2.22
Retrieved 100 of 98,524 protein–RNA pairs in 106.8 ms