Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 MIR4643-201ENST00000577473 78 ntBASIC0.46□□□□□ -2.34
LHX3Q9UBR4 MIR4711-201ENST00000578274 70 ntBASIC0.46□□□□□ -2.34
LHX3Q9UBR4 MIR3129-201ENST00000581095 76 ntBASIC0.46□□□□□ -2.34
LHX3Q9UBR4 MIR4282-201ENST00000583613 67 ntBASIC0.46□□□□□ -2.34
LHX3Q9UBR4 AC243829.3-201ENST00000622177 108 ntBASIC0.46□□□□□ -2.34
LHX3Q9UBR4 MIR376A2-201ENST00000636782 80 ntBASIC0.46□□□□□ -2.34
LHX3Q9UBR4 ZBTB41-201ENST00000367405 8478 ntAPPRIS P1 TSL 1 (best) BASIC0.46□□□□□ -2.34
LHX3Q9UBR4 MIR302B-201ENST00000362188 73 ntBASIC0.45□□□□□ -2.34
LHX3Q9UBR4 Y_RNA.277-201ENST00000364754 102 ntBASIC0.45□□□□□ -2.34
LHX3Q9UBR4 Y_RNA.351-201ENST00000365436 96 ntBASIC0.45□□□□□ -2.34
LHX3Q9UBR4 Y_RNA.396-201ENST00000383949 103 ntBASIC0.45□□□□□ -2.34
LHX3Q9UBR4 RNU6-472P-201ENST00000384299 107 ntBASIC0.45□□□□□ -2.34
LHX3Q9UBR4 MIR606-201ENST00000384851 96 ntBASIC0.45□□□□□ -2.34
LHX3Q9UBR4 MIR140-201ENST00000385282 100 ntBASIC0.45□□□□□ -2.34
LHX3Q9UBR4 MIR938-201ENST00000401216 83 ntBASIC0.45□□□□□ -2.34
LHX3Q9UBR4 AC114737.2-201ENST00000421583 173 ntBASIC0.45□□□□□ -2.34
LHX3Q9UBR4 MIR18B-201ENST00000454574 71 ntBASIC0.45□□□□□ -2.34
LHX3Q9UBR4 MIR3612-201ENST00000579753 87 ntBASIC0.45□□□□□ -2.34
LHX3Q9UBR4 AC008737.2-201ENST00000599446 118 ntBASIC0.45□□□□□ -2.34
LHX3Q9UBR4 AC097639.2-201ENST00000603159 172 ntBASIC0.45□□□□□ -2.34
LHX3Q9UBR4 AL162730.1-201ENST00000605734 292 ntBASIC0.45□□□□□ -2.34
LHX3Q9UBR4 MIR6779-201ENST00000617283 64 ntBASIC0.45□□□□□ -2.34
LHX3Q9UBR4 AC010487.4-201ENST00000637027 61 ntBASIC0.45□□□□□ -2.34
LHX3Q9UBR4 CALCRL-202ENST00000409998 5223 ntAPPRIS P1 TSL 5 BASIC0.44□□□□□ -2.34
LHX3Q9UBR4 MIR18A-201ENST00000362310 71 ntBASIC0.44□□□□□ -2.34
LHX3Q9UBR4 RNU6-653P-201ENST00000363074 106 ntBASIC0.44□□□□□ -2.34
LHX3Q9UBR4 Y_RNA.205-201ENST00000364128 113 ntBASIC0.44□□□□□ -2.34
LHX3Q9UBR4 RNU4-45P-201ENST00000365469 141 ntBASIC0.44□□□□□ -2.34
LHX3Q9UBR4 RNU4-17P-201ENST00000365598 141 ntBASIC0.44□□□□□ -2.34
LHX3Q9UBR4 RNU6-364P-201ENST00000384387 107 ntBASIC0.44□□□□□ -2.34
LHX3Q9UBR4 RNU7-185P-201ENST00000459215 60 ntBASIC0.44□□□□□ -2.34
LHX3Q9UBR4 AC004148.1-201ENST00000571506 398 ntTSL 5 BASIC0.44□□□□□ -2.34
LHX3Q9UBR4 MIR1273G-201ENST00000577677 100 ntBASIC0.44□□□□□ -2.34
LHX3Q9UBR4 AC008608.1-201ENST00000603910 127 ntBASIC0.44□□□□□ -2.34
LHX3Q9UBR4 Y_RNA.176-201ENST00000363815 109 ntBASIC0.43□□□□□ -2.34
LHX3Q9UBR4 RNU6-728P-201ENST00000365375 104 ntBASIC0.43□□□□□ -2.34
LHX3Q9UBR4 MIR1257-201ENST00000408490 117 ntBASIC0.43□□□□□ -2.34
LHX3Q9UBR4 MIR548F4-201ENST00000408515 105 ntBASIC0.43□□□□□ -2.34
LHX3Q9UBR4 RN7SKP12-201ENST00000516275 143 ntBASIC0.43□□□□□ -2.34
LHX3Q9UBR4 5S_rRNA.15-201ENST00000611169 127 ntBASIC0.43□□□□□ -2.34
LHX3Q9UBR4 MIR6717-201ENST00000622747 73 ntBASIC0.43□□□□□ -2.34
LHX3Q9UBR4 AL589743.1-201ENST00000551932 2712 ntBASIC0.43□□□□□ -2.34
LHX3Q9UBR4 OMD-201ENST00000375550 2449 ntAPPRIS P1 TSL 1 (best) BASIC0.42□□□□□ -2.34
LHX3Q9UBR4 Y_RNA.76-201ENST00000362931 109 ntBASIC0.42□□□□□ -2.34
LHX3Q9UBR4 SNORA63-201ENST00000363450 132 ntBASIC0.42□□□□□ -2.34
LHX3Q9UBR4 Y_RNA.262-201ENST00000364641 102 ntBASIC0.42□□□□□ -2.34
LHX3Q9UBR4 MIR125B2-201ENST00000385128 89 ntBASIC0.42□□□□□ -2.34
LHX3Q9UBR4 TRAJ2-201ENST00000390535 66 ntAPPRIS P1 BASIC0.42□□□□□ -2.34
LHX3Q9UBR4 SNORA26.6-201ENST00000391256 115 ntBASIC0.42□□□□□ -2.34
LHX3Q9UBR4 SNORA79-201ENST00000408376 140 ntBASIC0.42□□□□□ -2.34
LHX3Q9UBR4 AL136320.1-201ENST00000417273 430 ntTSL 3 BASIC0.42□□□□□ -2.34
LHX3Q9UBR4 RNU7-102P-201ENST00000458948 62 ntBASIC0.42□□□□□ -2.34
LHX3Q9UBR4 RNU7-156P-201ENST00000517214 74 ntBASIC0.42□□□□□ -2.34
LHX3Q9UBR4 AL596211.1-201ENST00000569873 2277 ntBASIC0.41□□□□□ -2.34
LHX3Q9UBR4 Y_RNA.47-201ENST00000362697 108 ntBASIC0.41□□□□□ -2.34
LHX3Q9UBR4 Y_RNA.352-201ENST00000365439 102 ntBASIC0.41□□□□□ -2.34
LHX3Q9UBR4 SNORA50A-201ENST00000384225 134 ntBASIC0.41□□□□□ -2.34
LHX3Q9UBR4 MIR563-201ENST00000385080 79 ntBASIC0.41□□□□□ -2.34
LHX3Q9UBR4 RNU6-1319P-201ENST00000390855 104 ntBASIC0.41□□□□□ -2.34
LHX3Q9UBR4 RNU6-747P-201ENST00000390928 104 ntBASIC0.41□□□□□ -2.34
LHX3Q9UBR4 RNU6-241P-201ENST00000391148 104 ntBASIC0.41□□□□□ -2.34
LHX3Q9UBR4 RNU6-447P-201ENST00000410293 104 ntBASIC0.41□□□□□ -2.34
LHX3Q9UBR4 RNU6-1118P-201ENST00000410382 104 ntBASIC0.41□□□□□ -2.34
LHX3Q9UBR4 RNU6-1076P-201ENST00000410397 104 ntBASIC0.41□□□□□ -2.34
LHX3Q9UBR4 RNU6-355P-201ENST00000410427 104 ntBASIC0.41□□□□□ -2.34
LHX3Q9UBR4 RNU6-791P-201ENST00000410467 104 ntBASIC0.41□□□□□ -2.34
LHX3Q9UBR4 RNU6-705P-201ENST00000410601 104 ntBASIC0.41□□□□□ -2.34
LHX3Q9UBR4 RNU6-1100P-201ENST00000410691 104 ntBASIC0.41□□□□□ -2.34
LHX3Q9UBR4 RNU2-38P-201ENST00000410856 79 ntBASIC0.41□□□□□ -2.34
LHX3Q9UBR4 RNU6-860P-201ENST00000410860 104 ntBASIC0.41□□□□□ -2.34
LHX3Q9UBR4 RNU6-1217P-201ENST00000411276 104 ntBASIC0.41□□□□□ -2.34
LHX3Q9UBR4 RNU6-785P-201ENST00000411324 104 ntBASIC0.41□□□□□ -2.34
LHX3Q9UBR4 AL135790.1-201ENST00000427161 157 ntTSL 3 BASIC0.41□□□□□ -2.34
LHX3Q9UBR4 SEPT7P4-201ENST00000437076 306 ntBASIC0.41□□□□□ -2.34
LHX3Q9UBR4 RNY3P16-201ENST00000516338 101 ntBASIC0.41□□□□□ -2.34
LHX3Q9UBR4 AL442067.1-201ENST00000613261 223 ntBASIC0.41□□□□□ -2.34
LHX3Q9UBR4 U6.90-201ENST00000614007 104 ntBASIC0.41□□□□□ -2.34
LHX3Q9UBR4 U6.70-201ENST00000620287 104 ntBASIC0.41□□□□□ -2.34
LHX3Q9UBR4 MIR30D-201ENST00000362283 70 ntBASIC0.4□□□□□ -2.35
LHX3Q9UBR4 Y_RNA.292-201ENST00000364904 97 ntBASIC0.4□□□□□ -2.35
LHX3Q9UBR4 RNU6-597P-201ENST00000365620 102 ntBASIC0.4□□□□□ -2.35
LHX3Q9UBR4 RNU6-679P-201ENST00000391003 106 ntBASIC0.4□□□□□ -2.35
LHX3Q9UBR4 Y_RNA.618-201ENST00000410949 107 ntBASIC0.4□□□□□ -2.35
LHX3Q9UBR4 AL121914.1-201ENST00000450188 156 ntBASIC0.4□□□□□ -2.35
LHX3Q9UBR4 AL117187.1-201ENST00000555482 181 ntBASIC0.4□□□□□ -2.35
LHX3Q9UBR4 MIR5197-201ENST00000583721 112 ntBASIC0.4□□□□□ -2.35
LHX3Q9UBR4 AC011921.3-201ENST00000605540 361 ntBASIC0.4□□□□□ -2.35
LHX3Q9UBR4 Y_RNA.812-201ENST00000610788 101 ntBASIC0.4□□□□□ -2.35
LHX3Q9UBR4 Y_RNA.784-201ENST00000613803 101 ntBASIC0.4□□□□□ -2.35
LHX3Q9UBR4 Y_RNA.787-201ENST00000616522 101 ntBASIC0.4□□□□□ -2.35
LHX3Q9UBR4 Y_RNA.780-201ENST00000617336 101 ntBASIC0.4□□□□□ -2.35
LHX3Q9UBR4 Y_RNA.801-201ENST00000619005 101 ntBASIC0.4□□□□□ -2.35
LHX3Q9UBR4 AC091932.4-201ENST00000623386 200 ntBASIC0.4□□□□□ -2.35
LHX3Q9UBR4 MIR924-201ENST00000638017 53 ntBASIC0.4□□□□□ -2.35
LHX3Q9UBR4 Y_RNA.145-201ENST00000363527 102 ntBASIC0.39□□□□□ -2.35
LHX3Q9UBR4 Y_RNA.459-201ENST00000384251 102 ntBASIC0.39□□□□□ -2.35
LHX3Q9UBR4 Y_RNA.518-201ENST00000384552 113 ntBASIC0.39□□□□□ -2.35
LHX3Q9UBR4 Y_RNA.542-201ENST00000384641 111 ntBASIC0.39□□□□□ -2.35
LHX3Q9UBR4 AL162399.1-201ENST00000426090 130 ntTSL 3 BASIC0.39□□□□□ -2.35
LHX3Q9UBR4 RNU7-80P-201ENST00000459562 61 ntBASIC0.39□□□□□ -2.35
Retrieved 100 of 98,524 protein–RNA pairs in 487.6 ms