Protein–RNA interactions for Protein: Q9H2Z4

NKX2-4, Homeobox protein Nkx-2.4, humanhuman

Predictions only

Length 354 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-4Q9H2Z4 AC004812.1-201ENST00000540773 146 ntBASIC2.01□□□□□ -2.09
NKX2-4Q9H2Z4 MIR5002-201ENST00000584713 97 ntBASIC2.01□□□□□ -2.09
NKX2-4Q9H2Z4 AC103810.8-201ENST00000607347 118 ntBASIC2.01□□□□□ -2.09
NKX2-4Q9H2Z4 MIR8063-201ENST00000621930 81 ntBASIC2.01□□□□□ -2.09
NKX2-4Q9H2Z4 Metazoa_SRP.32-201ENST00000622685 286 ntBASIC2.01□□□□□ -2.09
NKX2-4Q9H2Z4 MIR6717-201ENST00000622747 73 ntBASIC2.01□□□□□ -2.09
NKX2-4Q9H2Z4 USP53-202ENST00000450251 6072 ntAPPRIS P1 TSL 5 BASIC2□□□□□ -2.09
NKX2-4Q9H2Z4 SNORA26.6-201ENST00000391256 115 ntBASIC2□□□□□ -2.09
NKX2-4Q9H2Z4 snoU13.9-201ENST00000458927 103 ntBASIC2□□□□□ -2.09
NKX2-4Q9H2Z4 RNU7-95P-201ENST00000459222 64 ntBASIC2□□□□□ -2.09
NKX2-4Q9H2Z4 RNU7-113P-201ENST00000459273 62 ntBASIC2□□□□□ -2.09
NKX2-4Q9H2Z4 RPS29P11-201ENST00000496507 171 ntBASIC2□□□□□ -2.09
NKX2-4Q9H2Z4 IGHVIII-5-1-201ENST00000523059 99 ntBASIC2□□□□□ -2.09
NKX2-4Q9H2Z4 AL357312.1-201ENST00000603879 298 ntBASIC2□□□□□ -2.09
NKX2-4Q9H2Z4 AL627230.6-201ENST00000611129 280 ntBASIC2□□□□□ -2.09
NKX2-4Q9H2Z4 C16orf97-206ENST00000622950 415 ntTSL 2 BASIC2□□□□□ -2.09
NKX2-4Q9H2Z4 MIR4251-201ENST00000635819 61 ntBASIC2□□□□□ -2.09
NKX2-4Q9H2Z4 LRRCC1-202ENST00000414626 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC1.99□□□□□ -2.09
NKX2-4Q9H2Z4 AL596028.1-201ENST00000326971 197 ntBASIC1.99□□□□□ -2.09
NKX2-4Q9H2Z4 SNORA1.1-201ENST00000364671 133 ntBASIC1.99□□□□□ -2.09
NKX2-4Q9H2Z4 Y_RNA.531-201ENST00000384589 121 ntBASIC1.99□□□□□ -2.09
NKX2-4Q9H2Z4 MIR144-201ENST00000384886 86 ntBASIC1.99□□□□□ -2.09
NKX2-4Q9H2Z4 SNORD12C-201ENST00000386307 89 ntBASIC1.99□□□□□ -2.09
NKX2-4Q9H2Z4 SNORD41-201ENST00000386967 70 ntBASIC1.99□□□□□ -2.09
NKX2-4Q9H2Z4 SNORA67.5-201ENST00000391036 107 ntBASIC1.99□□□□□ -2.09
NKX2-4Q9H2Z4 RNA5SP233-201ENST00000459153 113 ntBASIC1.99□□□□□ -2.09
NKX2-4Q9H2Z4 SNORA4-201ENST00000584302 138 ntBASIC1.99□□□□□ -2.09
NKX2-4Q9H2Z4 TRAJ36-201ENST00000614481 58 ntAPPRIS P1 BASIC1.99□□□□□ -2.09
NKX2-4Q9H2Z4 FAS-AS1.2-201ENST00000620386 170 ntBASIC1.99□□□□□ -2.09
NKX2-4Q9H2Z4 LINC00643-201ENST00000334389 3247 ntTSL 2 BASIC1.99□□□□□ -2.09
NKX2-4Q9H2Z4 CGGBP1-202ENST00000398392 5298 ntAPPRIS P1 BASIC1.99□□□□□ -2.09
NKX2-4Q9H2Z4 PYGO1-201ENST00000302000 8488 ntTSL 1 (best) BASIC1.98□□□□□ -2.09
NKX2-4Q9H2Z4 RNU6-153P-201ENST00000364422 104 ntBASIC1.98□□□□□ -2.09
NKX2-4Q9H2Z4 Y_RNA.281-201ENST00000364774 94 ntBASIC1.98□□□□□ -2.09
NKX2-4Q9H2Z4 Y_RNA.430-201ENST00000384081 110 ntBASIC1.98□□□□□ -2.09
NKX2-4Q9H2Z4 MIR30A-201ENST00000385092 71 ntBASIC1.98□□□□□ -2.09
NKX2-4Q9H2Z4 MT-TI-201ENST00000387365 69 ntBASIC1.98□□□□□ -2.09
NKX2-4Q9H2Z4 TRAJ11-201ENST00000390526 60 ntAPPRIS P1 BASIC1.98□□□□□ -2.09
NKX2-4Q9H2Z4 RPS3AP1-201ENST00000413190 320 ntBASIC1.98□□□□□ -2.09
NKX2-4Q9H2Z4 HMGN1P33-201ENST00000432945 451 ntBASIC1.98□□□□□ -2.09
NKX2-4Q9H2Z4 RNU7-41P-201ENST00000515917 61 ntBASIC1.98□□□□□ -2.09
NKX2-4Q9H2Z4 RNA5SP82-201ENST00000516707 92 ntBASIC1.98□□□□□ -2.09
NKX2-4Q9H2Z4 RNU7-6P-201ENST00000516845 62 ntBASIC1.98□□□□□ -2.09
NKX2-4Q9H2Z4 MIR4679-2-201ENST00000578358 77 ntBASIC1.98□□□□□ -2.09
NKX2-4Q9H2Z4 MIR6841-201ENST00000637129 72 ntBASIC1.98□□□□□ -2.09
NKX2-4Q9H2Z4 AL589743.1-201ENST00000551932 2712 ntBASIC1.98□□□□□ -2.09
NKX2-4Q9H2Z4 Y_RNA.171-201ENST00000363760 102 ntBASIC1.97□□□□□ -2.09
NKX2-4Q9H2Z4 RNU6-755P-201ENST00000364400 103 ntBASIC1.97□□□□□ -2.09
NKX2-4Q9H2Z4 Y_RNA.299-201ENST00000364973 94 ntBASIC1.97□□□□□ -2.09
NKX2-4Q9H2Z4 Y_RNA.549-201ENST00000384657 102 ntBASIC1.97□□□□□ -2.09
NKX2-4Q9H2Z4 AL356379.1-201ENST00000414105 126 ntBASIC1.97□□□□□ -2.09
NKX2-4Q9H2Z4 HMGN2P19-201ENST00000425149 265 ntBASIC1.97□□□□□ -2.09
NKX2-4Q9H2Z4 HSPE1P24-201ENST00000450782 238 ntBASIC1.97□□□□□ -2.09
NKX2-4Q9H2Z4 GHRLOS.1-201ENST00000610995 70 ntBASIC1.97□□□□□ -2.09
NKX2-4Q9H2Z4 SNORA63.5-201ENST00000363548 123 ntBASIC1.96□□□□□ -2.1
NKX2-4Q9H2Z4 RNA5SP48-201ENST00000363969 126 ntBASIC1.96□□□□□ -2.1
NKX2-4Q9H2Z4 Y_RNA.362-201ENST00000365518 110 ntBASIC1.96□□□□□ -2.1
NKX2-4Q9H2Z4 MIR548D2-201ENST00000384955 97 ntBASIC1.96□□□□□ -2.1
NKX2-4Q9H2Z4 MIR1276-201ENST00000408707 83 ntBASIC1.96□□□□□ -2.1
NKX2-4Q9H2Z4 AC005908.1-201ENST00000468701 347 ntBASIC1.96□□□□□ -2.1
NKX2-4Q9H2Z4 RPS27P21-201ENST00000486977 252 ntBASIC1.96□□□□□ -2.1
NKX2-4Q9H2Z4 RPS23P4-201ENST00000487908 423 ntBASIC1.96□□□□□ -2.1
NKX2-4Q9H2Z4 AC113410.1-201ENST00000505029 247 ntBASIC1.96□□□□□ -2.1
NKX2-4Q9H2Z4 MIR5694-201ENST00000581190 76 ntBASIC1.96□□□□□ -2.1
NKX2-4Q9H2Z4 MIR3935-201ENST00000583472 104 ntBASIC1.96□□□□□ -2.1
NKX2-4Q9H2Z4 AL512598.1-201ENST00000610158 273 ntBASIC1.96□□□□□ -2.1
NKX2-4Q9H2Z4 MIR8055-201ENST00000610739 97 ntBASIC1.96□□□□□ -2.1
NKX2-4Q9H2Z4 AL035470.1-201ENST00000622571 220 ntBASIC1.96□□□□□ -2.1
NKX2-4Q9H2Z4 Y_RNA.49-201ENST00000362714 112 ntBASIC1.95□□□□□ -2.1
NKX2-4Q9H2Z4 Y_RNA.85-201ENST00000363014 111 ntBASIC1.95□□□□□ -2.1
NKX2-4Q9H2Z4 RNU6-1107P-201ENST00000364817 104 ntBASIC1.95□□□□□ -2.1
NKX2-4Q9H2Z4 Y_RNA.327-201ENST00000365201 102 ntBASIC1.95□□□□□ -2.1
NKX2-4Q9H2Z4 RNA5SP33-201ENST00000516687 98 ntBASIC1.95□□□□□ -2.1
NKX2-4Q9H2Z4 RNU6-1258P-201ENST00000516911 111 ntBASIC1.95□□□□□ -2.1
NKX2-4Q9H2Z4 CYP3A52P-201ENST00000563326 91 ntBASIC1.95□□□□□ -2.1
NKX2-4Q9H2Z4 MIR548AO-201ENST00000579992 96 ntBASIC1.95□□□□□ -2.1
NKX2-4Q9H2Z4 TEX15-203ENST00000638951 11341 ntAPPRIS P1 TSL 5 BASIC1.95□□□□□ -2.1
NKX2-4Q9H2Z4 THOC2-216ENST00000491737 4452 ntTSL 5 BASIC1.94□□□□□ -2.1
NKX2-4Q9H2Z4 Y_RNA.354-201ENST00000365448 111 ntBASIC1.94□□□□□ -2.1
NKX2-4Q9H2Z4 AC073127.1-201ENST00000447336 333 ntTSL 3 BASIC1.94□□□□□ -2.1
NKX2-4Q9H2Z4 AC090616.3-202ENST00000583346 205 ntTSL 2 BASIC1.94□□□□□ -2.1
NKX2-4Q9H2Z4 MIR502-201ENST00000606349 86 ntBASIC1.94□□□□□ -2.1
NKX2-4Q9H2Z4 MIR6840-201ENST00000611937 71 ntBASIC1.94□□□□□ -2.1
NKX2-4Q9H2Z4 MIR6504-201ENST00000613520 61 ntBASIC1.94□□□□□ -2.1
NKX2-4Q9H2Z4 Z97988.1-201ENST00000637697 135 ntBASIC1.94□□□□□ -2.1
NKX2-4Q9H2Z4 ZBBX-205ENST00000455345 3185 ntAPPRIS ALT2 TSL 1 (best) BASIC1.93□□□□□ -2.1
NKX2-4Q9H2Z4 SNORD115-2-201ENST00000362842 82 ntBASIC1.93□□□□□ -2.1
NKX2-4Q9H2Z4 RNA5SP160-201ENST00000364866 120 ntBASIC1.93□□□□□ -2.1
NKX2-4Q9H2Z4 SNORD115-20-201ENST00000365099 82 ntBASIC1.93□□□□□ -2.1
NKX2-4Q9H2Z4 MIR676-201ENST00000390702 67 ntBASIC1.93□□□□□ -2.1
NKX2-4Q9H2Z4 RNU4-69P-201ENST00000410677 143 ntBASIC1.93□□□□□ -2.1
NKX2-4Q9H2Z4 RPL39P39-201ENST00000455840 151 ntBASIC1.93□□□□□ -2.1
NKX2-4Q9H2Z4 AC079140.2-201ENST00000506193 142 ntBASIC1.93□□□□□ -2.1
NKX2-4Q9H2Z4 RNU6-947P-201ENST00000516264 106 ntBASIC1.93□□□□□ -2.1
NKX2-4Q9H2Z4 AC019176.1-201ENST00000518519 225 ntBASIC1.93□□□□□ -2.1
NKX2-4Q9H2Z4 SNORD33-201ENST00000362761 85 ntBASIC1.92□□□□□ -2.1
NKX2-4Q9H2Z4 Y_RNA.344-201ENST00000365381 112 ntBASIC1.92□□□□□ -2.1
NKX2-4Q9H2Z4 AC009474.2-201ENST00000451383 136 ntBASIC1.92□□□□□ -2.1
NKX2-4Q9H2Z4 AC104435.1-201ENST00000483483 166 ntBASIC1.92□□□□□ -2.1
NKX2-4Q9H2Z4 AC121758.2-201ENST00000553271 193 ntBASIC1.92□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 198.7 ms