Protein–RNA interactions for Protein: Q9H1J1

UPF3A, Regulator of nonsense transcripts 3A, humanhuman

Known RBP Predictions only

Length 476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3AQ9H1J1 AC032019.2-201ENST00000584916 403 ntTSL 5 BASIC1.05□□□□□ -2.24
UPF3AQ9H1J1 DNAJC19P2-201ENST00000593340 302 ntBASIC1.05□□□□□ -2.24
UPF3AQ9H1J1 AL357312.1-201ENST00000603879 298 ntBASIC1.05□□□□□ -2.24
UPF3AQ9H1J1 TRAJ36-201ENST00000614481 58 ntAPPRIS P1 BASIC1.05□□□□□ -2.24
UPF3AQ9H1J1 AC243994.1-201ENST00000618627 109 ntBASIC1.05□□□□□ -2.24
UPF3AQ9H1J1 MTND1P7-201ENST00000632801 297 ntBASIC1.05□□□□□ -2.24
UPF3AQ9H1J1 Y_RNA.52-201ENST00000362760 96 ntBASIC1.04□□□□□ -2.24
UPF3AQ9H1J1 Y_RNA.170-201ENST00000363746 110 ntBASIC1.04□□□□□ -2.24
UPF3AQ9H1J1 SNORA25.7-201ENST00000364375 127 ntBASIC1.04□□□□□ -2.24
UPF3AQ9H1J1 Y_RNA.251-201ENST00000364551 99 ntBASIC1.04□□□□□ -2.24
UPF3AQ9H1J1 SNORD116-18-201ENST00000383961 92 ntBASIC1.04□□□□□ -2.24
UPF3AQ9H1J1 Y_RNA.464-201ENST00000384282 110 ntBASIC1.04□□□□□ -2.24
UPF3AQ9H1J1 Y_RNA.497-201ENST00000384447 98 ntBASIC1.04□□□□□ -2.24
UPF3AQ9H1J1 RNU6-913P-201ENST00000390913 95 ntBASIC1.04□□□□□ -2.24
UPF3AQ9H1J1 RNA5SP127-201ENST00000411051 133 ntBASIC1.04□□□□□ -2.24
UPF3AQ9H1J1 AL135923.1-201ENST00000413066 196 ntTSL 3 BASIC1.04□□□□□ -2.24
UPF3AQ9H1J1 AC245047.7-201ENST00000440265 293 ntBASIC1.04□□□□□ -2.24
UPF3AQ9H1J1 RNU7-197P-201ENST00000458836 62 ntBASIC1.04□□□□□ -2.24
UPF3AQ9H1J1 PRELID3BP2-201ENST00000605362 201 ntBASIC1.04□□□□□ -2.24
UPF3AQ9H1J1 AC103810.9-201ENST00000606688 112 ntBASIC1.04□□□□□ -2.24
UPF3AQ9H1J1 IST1-227ENST00000626438 126 ntTSL 5 BASIC1.04□□□□□ -2.24
UPF3AQ9H1J1 MIR4251-201ENST00000635819 61 ntBASIC1.04□□□□□ -2.24
UPF3AQ9H1J1 RNU6-508P-201ENST00000363231 103 ntBASIC1.03□□□□□ -2.24
UPF3AQ9H1J1 SNORA1.2-201ENST00000365189 134 ntBASIC1.03□□□□□ -2.24
UPF3AQ9H1J1 RNU4-11P-201ENST00000365287 132 ntBASIC1.03□□□□□ -2.24
UPF3AQ9H1J1 SNORA22-201ENST00000383907 134 ntBASIC1.03□□□□□ -2.24
UPF3AQ9H1J1 SNORA22C-201ENST00000384614 134 ntBASIC1.03□□□□□ -2.24
UPF3AQ9H1J1 SNORA75.5-201ENST00000391291 81 ntBASIC1.03□□□□□ -2.24
UPF3AQ9H1J1 RNU6-1190P-201ENST00000410811 104 ntBASIC1.03□□□□□ -2.24
UPF3AQ9H1J1 LINC01866-201ENST00000421181 201 ntTSL 3 BASIC1.03□□□□□ -2.24
UPF3AQ9H1J1 AC090844.1-201ENST00000422019 156 ntBASIC1.03□□□□□ -2.24
UPF3AQ9H1J1 AL392103.1-201ENST00000447000 198 ntBASIC1.03□□□□□ -2.24
UPF3AQ9H1J1 RPS29P24-201ENST00000486345 171 ntBASIC1.03□□□□□ -2.24
UPF3AQ9H1J1 SNORA31.2-201ENST00000516019 134 ntBASIC1.03□□□□□ -2.24
UPF3AQ9H1J1 RNA5SP236-201ENST00000516169 116 ntBASIC1.03□□□□□ -2.24
UPF3AQ9H1J1 RNU6-1149P-201ENST00000516810 97 ntBASIC1.03□□□□□ -2.24
UPF3AQ9H1J1 Y_RNA.778-201ENST00000620203 90 ntBASIC1.03□□□□□ -2.24
UPF3AQ9H1J1 RNA5SP327-201ENST00000362494 101 ntBASIC1.02□□□□□ -2.25
UPF3AQ9H1J1 RNU6-151P-201ENST00000364158 107 ntBASIC1.02□□□□□ -2.25
UPF3AQ9H1J1 SNORA51.10-201ENST00000384418 136 ntBASIC1.02□□□□□ -2.25
UPF3AQ9H1J1 Y_RNA.506-201ENST00000384494 102 ntBASIC1.02□□□□□ -2.25
UPF3AQ9H1J1 AL133373.1-201ENST00000497098 94 ntBASIC1.02□□□□□ -2.25
UPF3AQ9H1J1 RNU6-998P-201ENST00000515894 101 ntBASIC1.02□□□□□ -2.25
UPF3AQ9H1J1 MIR3646-201ENST00000578301 84 ntBASIC1.02□□□□□ -2.25
UPF3AQ9H1J1 MIR6844-201ENST00000637122 62 ntBASIC1.02□□□□□ -2.25
UPF3AQ9H1J1 RNU6-449P-201ENST00000383914 107 ntBASIC1.01□□□□□ -2.25
UPF3AQ9H1J1 SNORA75.2-201ENST00000391138 150 ntBASIC1.01□□□□□ -2.25
UPF3AQ9H1J1 SNORA75.3-201ENST00000391231 150 ntBASIC1.01□□□□□ -2.25
UPF3AQ9H1J1 RNU6ATAC8P-201ENST00000408460 126 ntBASIC1.01□□□□□ -2.25
UPF3AQ9H1J1 RNU7-45P-201ENST00000459460 63 ntBASIC1.01□□□□□ -2.25
UPF3AQ9H1J1 RNU7-200P-201ENST00000516105 62 ntBASIC1.01□□□□□ -2.25
UPF3AQ9H1J1 RNU6-958P-201ENST00000516995 106 ntBASIC1.01□□□□□ -2.25
UPF3AQ9H1J1 AC091932.4-201ENST00000623386 200 ntBASIC1.01□□□□□ -2.25
UPF3AQ9H1J1 RNA5SP264-201ENST00000363115 107 ntBASIC1□□□□□ -2.25
UPF3AQ9H1J1 RNA5SP48-201ENST00000363969 126 ntBASIC1□□□□□ -2.25
UPF3AQ9H1J1 Y_RNA.351-201ENST00000365436 96 ntBASIC1□□□□□ -2.25
UPF3AQ9H1J1 SNORA70.7-201ENST00000384159 133 ntBASIC1□□□□□ -2.25
UPF3AQ9H1J1 SNORA26.6-201ENST00000391256 115 ntBASIC1□□□□□ -2.25
UPF3AQ9H1J1 HMGN1P33-201ENST00000432945 451 ntBASIC1□□□□□ -2.25
UPF3AQ9H1J1 RPL39P39-201ENST00000455840 151 ntBASIC1□□□□□ -2.25
UPF3AQ9H1J1 RNU7-73P-201ENST00000458743 63 ntBASIC1□□□□□ -2.25
UPF3AQ9H1J1 RNU2-11P-201ENST00000459191 187 ntBASIC1□□□□□ -2.25
UPF3AQ9H1J1 RNU7-96P-201ENST00000459535 64 ntBASIC1□□□□□ -2.25
UPF3AQ9H1J1 AC112693.2-201ENST00000556538 232 ntBASIC1□□□□□ -2.25
UPF3AQ9H1J1 MIR4698-201ENST00000577795 80 ntBASIC1□□□□□ -2.25
UPF3AQ9H1J1 AC131055.1-201ENST00000584626 316 ntBASIC1□□□□□ -2.25
UPF3AQ9H1J1 HSPE1P19-201ENST00000603327 295 ntBASIC1□□□□□ -2.25
UPF3AQ9H1J1 MIR8055-201ENST00000610739 97 ntBASIC1□□□□□ -2.25
UPF3AQ9H1J1 MIR342-201ENST00000362212 99 ntBASIC0.99□□□□□ -2.25
UPF3AQ9H1J1 MIR569-201ENST00000385228 96 ntBASIC0.99□□□□□ -2.25
UPF3AQ9H1J1 RNU6-910P-201ENST00000390844 107 ntBASIC0.99□□□□□ -2.25
UPF3AQ9H1J1 RNU6-460P-201ENST00000391158 108 ntBASIC0.99□□□□□ -2.25
UPF3AQ9H1J1 AL035398.1-201ENST00000430869 322 ntBASIC0.99□□□□□ -2.25
UPF3AQ9H1J1 RNU7-67P-201ENST00000459003 62 ntBASIC0.99□□□□□ -2.25
UPF3AQ9H1J1 RNA5SP272-201ENST00000516095 111 ntBASIC0.99□□□□□ -2.25
UPF3AQ9H1J1 RNU6-346P-201ENST00000516288 111 ntBASIC0.99□□□□□ -2.25
UPF3AQ9H1J1 Y_RNA.686-201ENST00000516548 134 ntBASIC0.99□□□□□ -2.25
UPF3AQ9H1J1 AC010177.1-201ENST00000547819 366 ntTSL 3 BASIC0.99□□□□□ -2.25
UPF3AQ9H1J1 AL020996.3-201ENST00000606617 222 ntBASIC0.99□□□□□ -2.25
UPF3AQ9H1J1 RNU6-654P-201ENST00000364373 107 ntBASIC0.98□□□□□ -2.25
UPF3AQ9H1J1 Y_RNA.400-201ENST00000383963 111 ntBASIC0.98□□□□□ -2.25
UPF3AQ9H1J1 RNU6-125P-201ENST00000384505 107 ntBASIC0.98□□□□□ -2.25
UPF3AQ9H1J1 SNORD37.2-201ENST00000391075 66 ntBASIC0.98□□□□□ -2.25
UPF3AQ9H1J1 AC004941.2-201ENST00000427009 228 ntBASIC0.98□□□□□ -2.25
UPF3AQ9H1J1 Y_RNA.651-201ENST00000459380 103 ntBASIC0.98□□□□□ -2.25
UPF3AQ9H1J1 AC107297.1-201ENST00000459991 176 ntBASIC0.98□□□□□ -2.25
UPF3AQ9H1J1 SNORD79.1-201ENST00000516069 84 ntBASIC0.98□□□□□ -2.25
UPF3AQ9H1J1 FAM71BP1-201ENST00000604431 523 ntBASIC0.98□□□□□ -2.25
UPF3AQ9H1J1 MIR8065-201ENST00000620577 100 ntBASIC0.98□□□□□ -2.25
UPF3AQ9H1J1 MIR6516-201ENST00000630554 81 ntBASIC0.98□□□□□ -2.25
UPF3AQ9H1J1 MIR103A2-201ENST00000362154 78 ntBASIC0.97□□□□□ -2.25
UPF3AQ9H1J1 RNA5SP325-201ENST00000363756 130 ntBASIC0.97□□□□□ -2.25
UPF3AQ9H1J1 Y_RNA.215-201ENST00000364204 112 ntBASIC0.97□□□□□ -2.25
UPF3AQ9H1J1 AC244023.1-201ENST00000426884 112 ntBASIC0.97□□□□□ -2.25
UPF3AQ9H1J1 snoU13.16-201ENST00000459350 104 ntBASIC0.97□□□□□ -2.25
UPF3AQ9H1J1 AC092892.1-201ENST00000496067 327 ntTSL 5 BASIC0.97□□□□□ -2.25
UPF3AQ9H1J1 SNORA25.12-201ENST00000516202 82 ntBASIC0.97□□□□□ -2.25
UPF3AQ9H1J1 AC242498.1-201ENST00000604134 111 ntBASIC0.97□□□□□ -2.25
UPF3AQ9H1J1 AL022345.2-201ENST00000606307 135 ntBASIC0.97□□□□□ -2.25
UPF3AQ9H1J1 AL596211.1-201ENST00000569873 2277 ntBASIC0.96□□□□□ -2.26
Retrieved 100 of 98,524 protein–RNA pairs in 139.1 ms