Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 RNU1-98P-201ENST00000458992 160 ntBASIC2.03□□□□□ -2.08
TRAIPQ9BWF2 AC108081.1-201ENST00000604358 221 ntBASIC2.03□□□□□ -2.08
TRAIPQ9BWF2 FSIP2-202ENST00000424728 20788 ntAPPRIS P2 TSL 5 BASIC2.03□□□□□ -2.08
TRAIPQ9BWF2 RNU6-81P-201ENST00000365608 104 ntBASIC2.02□□□□□ -2.09
TRAIPQ9BWF2 RNU6-959P-201ENST00000384671 107 ntBASIC2.02□□□□□ -2.09
TRAIPQ9BWF2 MIR9-3-201ENST00000385084 90 ntBASIC2.02□□□□□ -2.09
TRAIPQ9BWF2 MIR1302-7-201ENST00000408841 72 ntBASIC2.02□□□□□ -2.09
TRAIPQ9BWF2 RNU6-613P-201ENST00000410412 108 ntBASIC2.02□□□□□ -2.09
TRAIPQ9BWF2 RNA5SP237-201ENST00000410414 113 ntBASIC2.02□□□□□ -2.09
TRAIPQ9BWF2 RNU7-90P-201ENST00000459216 62 ntBASIC2.02□□□□□ -2.09
TRAIPQ9BWF2 IGHVII-40-1-201ENST00000517316 58 ntBASIC2.02□□□□□ -2.09
TRAIPQ9BWF2 AC007450.1-201ENST00000536492 188 ntTSL 3 BASIC2.02□□□□□ -2.09
TRAIPQ9BWF2 HOTAIRM1_4.1-201ENST00000617934 102 ntBASIC2.02□□□□□ -2.09
TRAIPQ9BWF2 NPAT-201ENST00000278612 6117 ntAPPRIS P2 TSL 1 (best) BASIC2.01□□□□□ -2.09
TRAIPQ9BWF2 RNU1-17P-201ENST00000363022 152 ntBASIC2.01□□□□□ -2.09
TRAIPQ9BWF2 SNORA25.8-201ENST00000364831 128 ntBASIC2.01□□□□□ -2.09
TRAIPQ9BWF2 Y_RNA.298-201ENST00000364960 107 ntBASIC2.01□□□□□ -2.09
TRAIPQ9BWF2 MIR1263-201ENST00000408324 86 ntBASIC2.01□□□□□ -2.09
TRAIPQ9BWF2 RNA5SP136-201ENST00000410906 107 ntBASIC2.01□□□□□ -2.09
TRAIPQ9BWF2 POLR2J4-204ENST00000418424 324 ntBASIC2.01□□□□□ -2.09
TRAIPQ9BWF2 AC090844.1-201ENST00000422019 156 ntBASIC2.01□□□□□ -2.09
TRAIPQ9BWF2 RNU6-62P-201ENST00000516526 102 ntBASIC2.01□□□□□ -2.09
TRAIPQ9BWF2 SNORA25-201ENST00000384384 134 ntBASIC2□□□□□ -2.09
TRAIPQ9BWF2 RNU6-1117P-201ENST00000384525 104 ntBASIC2□□□□□ -2.09
TRAIPQ9BWF2 SNORA2B-201ENST00000384583 137 ntBASIC2□□□□□ -2.09
TRAIPQ9BWF2 SNORD12-201ENST00000391002 90 ntBASIC2□□□□□ -2.09
TRAIPQ9BWF2 MIR3122-201ENST00000577243 73 ntBASIC2□□□□□ -2.09
TRAIPQ9BWF2 MIR6841-201ENST00000637129 72 ntBASIC2□□□□□ -2.09
TRAIPQ9BWF2 FSD1L-201ENST00000374707 7062 ntTSL 1 (best) BASIC2□□□□□ -2.09
TRAIPQ9BWF2 RNA5SP327-201ENST00000362494 101 ntBASIC1.99□□□□□ -2.09
TRAIPQ9BWF2 RNU6-205P-201ENST00000390858 107 ntBASIC1.99□□□□□ -2.09
TRAIPQ9BWF2 SNORA75.2-201ENST00000391138 150 ntBASIC1.99□□□□□ -2.09
TRAIPQ9BWF2 SNORA75.3-201ENST00000391231 150 ntBASIC1.99□□□□□ -2.09
TRAIPQ9BWF2 AC003989.2-201ENST00000440224 169 ntBASIC1.99□□□□□ -2.09
TRAIPQ9BWF2 SNORD79.1-201ENST00000516069 84 ntBASIC1.99□□□□□ -2.09
TRAIPQ9BWF2 RNY4P20-201ENST00000516678 93 ntBASIC1.99□□□□□ -2.09
TRAIPQ9BWF2 Y_RNA.299-201ENST00000364973 94 ntBASIC1.98□□□□□ -2.09
TRAIPQ9BWF2 AC008267.6-201ENST00000441664 139 ntBASIC1.98□□□□□ -2.09
TRAIPQ9BWF2 RNU7-21P-201ENST00000459430 62 ntBASIC1.98□□□□□ -2.09
TRAIPQ9BWF2 RPS29P11-201ENST00000496507 171 ntBASIC1.98□□□□□ -2.09
TRAIPQ9BWF2 AC113410.1-201ENST00000505029 247 ntBASIC1.98□□□□□ -2.09
TRAIPQ9BWF2 RNA5SP458-201ENST00000516188 119 ntBASIC1.98□□□□□ -2.09
TRAIPQ9BWF2 RNA5SP33-201ENST00000516687 98 ntBASIC1.98□□□□□ -2.09
TRAIPQ9BWF2 AC004812.1-201ENST00000540773 146 ntBASIC1.98□□□□□ -2.09
TRAIPQ9BWF2 ZGRF1-202ENST00000309071 3347 ntTSL 1 (best) BASIC1.98□□□□□ -2.09
TRAIPQ9BWF2 MIR377-201ENST00000362145 69 ntBASIC1.97□□□□□ -2.09
TRAIPQ9BWF2 Y_RNA.280-201ENST00000364765 112 ntBASIC1.97□□□□□ -2.09
TRAIPQ9BWF2 Y_RNA.531-201ENST00000384589 121 ntBASIC1.97□□□□□ -2.09
TRAIPQ9BWF2 RNU6ATAC8P-201ENST00000408460 126 ntBASIC1.97□□□□□ -2.09
TRAIPQ9BWF2 RPL39P25-201ENST00000449384 154 ntBASIC1.97□□□□□ -2.09
TRAIPQ9BWF2 RNU7-62P-201ENST00000458856 62 ntBASIC1.97□□□□□ -2.09
TRAIPQ9BWF2 RNU7-123P-201ENST00000515911 60 ntBASIC1.97□□□□□ -2.09
TRAIPQ9BWF2 AC019288.1-201ENST00000557918 224 ntBASIC1.97□□□□□ -2.09
TRAIPQ9BWF2 AC084768.2-201ENST00000622736 221 ntBASIC1.97□□□□□ -2.09
TRAIPQ9BWF2 AC008163.1-202ENST00000636004 2889 ntBASIC1.96□□□□□ -2.09
TRAIPQ9BWF2 Y_RNA.71-201ENST00000362892 104 ntBASIC1.96□□□□□ -2.1
TRAIPQ9BWF2 Y_RNA.171-201ENST00000363760 102 ntBASIC1.96□□□□□ -2.1
TRAIPQ9BWF2 Y_RNA.213-201ENST00000364178 111 ntBASIC1.96□□□□□ -2.1
TRAIPQ9BWF2 SNORD113.3-201ENST00000364630 78 ntBASIC1.96□□□□□ -2.1
TRAIPQ9BWF2 Y_RNA.346-201ENST00000365385 112 ntBASIC1.96□□□□□ -2.1
TRAIPQ9BWF2 SNORD26-201ENST00000384147 75 ntBASIC1.96□□□□□ -2.1
TRAIPQ9BWF2 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC1.96□□□□□ -2.1
TRAIPQ9BWF2 RNU2-35P-201ENST00000516446 142 ntBASIC1.96□□□□□ -2.1
TRAIPQ9BWF2 RNU6-1234P-201ENST00000516877 103 ntBASIC1.96□□□□□ -2.1
TRAIPQ9BWF2 AC036222.2-201ENST00000579033 333 ntTSL 3 BASIC1.96□□□□□ -2.1
TRAIPQ9BWF2 ZGRF1-208ENST00000505019 6652 ntAPPRIS P1 TSL 5 BASIC1.95□□□□□ -2.1
TRAIPQ9BWF2 RNU6-654P-201ENST00000364373 107 ntBASIC1.95□□□□□ -2.1
TRAIPQ9BWF2 RNU6-1237P-201ENST00000384777 107 ntBASIC1.95□□□□□ -2.1
TRAIPQ9BWF2 MIR588-201ENST00000384900 83 ntBASIC1.95□□□□□ -2.1
TRAIPQ9BWF2 SNORD12C-201ENST00000386307 89 ntBASIC1.95□□□□□ -2.1
TRAIPQ9BWF2 Y_RNA.617-201ENST00000410920 90 ntBASIC1.95□□□□□ -2.1
TRAIPQ9BWF2 AC244023.1-201ENST00000426884 112 ntBASIC1.95□□□□□ -2.1
TRAIPQ9BWF2 AC242498.1-201ENST00000604134 111 ntBASIC1.95□□□□□ -2.1
TRAIPQ9BWF2 AL157777.2-201ENST00000258070 137 ntBASIC1.94□□□□□ -2.1
TRAIPQ9BWF2 RNA5SP190-201ENST00000365222 118 ntBASIC1.94□□□□□ -2.1
TRAIPQ9BWF2 Y_RNA.363-201ENST00000365529 113 ntBASIC1.94□□□□□ -2.1
TRAIPQ9BWF2 SNORD116-14-201ENST00000383894 92 ntBASIC1.94□□□□□ -2.1
TRAIPQ9BWF2 SNORD116-17-201ENST00000383929 92 ntBASIC1.94□□□□□ -2.1
TRAIPQ9BWF2 SNORD116-15-201ENST00000384445 92 ntBASIC1.94□□□□□ -2.1
TRAIPQ9BWF2 Y_RNA.528-201ENST00000384575 108 ntBASIC1.94□□□□□ -2.1
TRAIPQ9BWF2 SNORD116-19-201ENST00000384729 92 ntBASIC1.94□□□□□ -2.1
TRAIPQ9BWF2 RNU6ATAC3P-201ENST00000387974 126 ntBASIC1.94□□□□□ -2.1
TRAIPQ9BWF2 SNORD111-201ENST00000408139 94 ntBASIC1.94□□□□□ -2.1
TRAIPQ9BWF2 AC063976.4-201ENST00000421971 163 ntBASIC1.94□□□□□ -2.1
TRAIPQ9BWF2 AL512326.2-201ENST00000426359 151 ntBASIC1.94□□□□□ -2.1
TRAIPQ9BWF2 RNU6-772P-201ENST00000516042 105 ntBASIC1.94□□□□□ -2.1
TRAIPQ9BWF2 SNORA25.15-201ENST00000516487 89 ntBASIC1.94□□□□□ -2.1
TRAIPQ9BWF2 AC025166.1-201ENST00000612411 163 ntBASIC1.94□□□□□ -2.1
TRAIPQ9BWF2 Y_RNA.168-201ENST00000363740 102 ntBASIC1.93□□□□□ -2.1
TRAIPQ9BWF2 SNORA67.5-201ENST00000391036 107 ntBASIC1.93□□□□□ -2.1
TRAIPQ9BWF2 RNU6-994P-201ENST00000410507 111 ntBASIC1.93□□□□□ -2.1
TRAIPQ9BWF2 snoU13.2-201ENST00000459201 104 ntBASIC1.93□□□□□ -2.1
TRAIPQ9BWF2 RNU7-40P-201ENST00000516397 64 ntBASIC1.93□□□□□ -2.1
TRAIPQ9BWF2 AC022596.1-201ENST00000582895 302 ntTSL 5 BASIC1.93□□□□□ -2.1
TRAIPQ9BWF2 MIR26B-201ENST00000362251 77 ntBASIC1.92□□□□□ -2.1
TRAIPQ9BWF2 SNORA16.1-201ENST00000364597 132 ntBASIC1.92□□□□□ -2.1
TRAIPQ9BWF2 SNORD58C-201ENST00000365223 64 ntBASIC1.92□□□□□ -2.1
TRAIPQ9BWF2 SNORA18-201ENST00000384416 132 ntBASIC1.92□□□□□ -2.1
TRAIPQ9BWF2 SNORA17.3-201ENST00000391159 129 ntBASIC1.92□□□□□ -2.1
TRAIPQ9BWF2 RNA5SP95-201ENST00000410319 137 ntBASIC1.92□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 581.5 ms