Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 SNORD115-40-201ENST00000606510 82 ntBASIC0.71□□□□□ -2.3
ZNF540Q8NDQ6 AC004792.1-201ENST00000614523 137 ntBASIC0.71□□□□□ -2.3
ZNF540Q8NDQ6 MIR6866-201ENST00000638146 69 ntBASIC0.71□□□□□ -2.3
ZNF540Q8NDQ6 RNU6-654P-201ENST00000364373 107 ntBASIC0.7□□□□□ -2.3
ZNF540Q8NDQ6 RNU6-818P-201ENST00000364837 108 ntBASIC0.7□□□□□ -2.3
ZNF540Q8NDQ6 Y_RNA.441-201ENST00000384123 112 ntBASIC0.7□□□□□ -2.3
ZNF540Q8NDQ6 RNU6-342P-201ENST00000384521 104 ntBASIC0.7□□□□□ -2.3
ZNF540Q8NDQ6 Y_RNA.537-201ENST00000384626 109 ntBASIC0.7□□□□□ -2.3
ZNF540Q8NDQ6 RNU6-768P-201ENST00000384683 107 ntBASIC0.7□□□□□ -2.3
ZNF540Q8NDQ6 RNU6ATAC27P-201ENST00000408289 119 ntBASIC0.7□□□□□ -2.3
ZNF540Q8NDQ6 RNU6-1190P-201ENST00000410811 104 ntBASIC0.7□□□□□ -2.3
ZNF540Q8NDQ6 RPS26P5-201ENST00000418544 335 ntBASIC0.7□□□□□ -2.3
ZNF540Q8NDQ6 AC087499.4-201ENST00000448505 178 ntBASIC0.7□□□□□ -2.3
ZNF540Q8NDQ6 RNU7-121P-201ENST00000516604 62 ntBASIC0.7□□□□□ -2.3
ZNF540Q8NDQ6 RNU6-126P-201ENST00000516685 103 ntBASIC0.7□□□□□ -2.3
ZNF540Q8NDQ6 MIR3671-201ENST00000580455 88 ntBASIC0.7□□□□□ -2.3
ZNF540Q8NDQ6 CLRN1-AS1.1-201ENST00000615643 79 ntBASIC0.7□□□□□ -2.3
ZNF540Q8NDQ6 AC134878.1-201ENST00000619901 243 ntBASIC0.7□□□□□ -2.3
ZNF540Q8NDQ6 IST1-227ENST00000626438 126 ntTSL 5 BASIC0.7□□□□□ -2.3
ZNF540Q8NDQ6 MIR4251-201ENST00000635819 61 ntBASIC0.7□□□□□ -2.3
ZNF540Q8NDQ6 MIR3658-201ENST00000636291 56 ntBASIC0.7□□□□□ -2.3
ZNF540Q8NDQ6 CXADR-202ENST00000356275 270 ntTSL 1 (best) BASIC0.69□□□□□ -2.3
ZNF540Q8NDQ6 Y_RNA.29-201ENST00000362570 113 ntBASIC0.69□□□□□ -2.3
ZNF540Q8NDQ6 RNA5SP48-201ENST00000363969 126 ntBASIC0.69□□□□□ -2.3
ZNF540Q8NDQ6 RNU4-84P-201ENST00000364200 139 ntBASIC0.69□□□□□ -2.3
ZNF540Q8NDQ6 RNU6-1082P-201ENST00000364574 107 ntBASIC0.69□□□□□ -2.3
ZNF540Q8NDQ6 Y_RNA.370-201ENST00000365589 108 ntBASIC0.69□□□□□ -2.3
ZNF540Q8NDQ6 RNU6-597P-201ENST00000365620 102 ntBASIC0.69□□□□□ -2.3
ZNF540Q8NDQ6 RNU6-1292P-201ENST00000383856 107 ntBASIC0.69□□□□□ -2.3
ZNF540Q8NDQ6 Y_RNA.542-201ENST00000384641 111 ntBASIC0.69□□□□□ -2.3
ZNF540Q8NDQ6 RNU6-907P-201ENST00000390924 102 ntBASIC0.69□□□□□ -2.3
ZNF540Q8NDQ6 SNORA40.5-201ENST00000391061 128 ntBASIC0.69□□□□□ -2.3
ZNF540Q8NDQ6 RNU6-1135P-201ENST00000411083 103 ntBASIC0.69□□□□□ -2.3
ZNF540Q8NDQ6 Y_RNA.793-201ENST00000411222 111 ntBASIC0.69□□□□□ -2.3
ZNF540Q8NDQ6 MTND5P15-201ENST00000434246 349 ntBASIC0.69□□□□□ -2.3
ZNF540Q8NDQ6 AC108059.2-201ENST00000434626 151 ntBASIC0.69□□□□□ -2.3
ZNF540Q8NDQ6 AL138752.1-201ENST00000452964 351 ntBASIC0.69□□□□□ -2.3
ZNF540Q8NDQ6 COX6CP6-201ENST00000490840 228 ntBASIC0.69□□□□□ -2.3
ZNF540Q8NDQ6 AC243994.1-201ENST00000618627 109 ntBASIC0.69□□□□□ -2.3
ZNF540Q8NDQ6 FTX_2.1-201ENST00000618816 94 ntBASIC0.69□□□□□ -2.3
ZNF540Q8NDQ6 MIR6516-201ENST00000630554 81 ntBASIC0.69□□□□□ -2.3
ZNF540Q8NDQ6 AC023934.1-201ENST00000574529 2389 ntBASIC0.68□□□□□ -2.3
ZNF540Q8NDQ6 Y_RNA.241-201ENST00000364470 117 ntBASIC0.68□□□□□ -2.3
ZNF540Q8NDQ6 RNU6-312P-201ENST00000364629 107 ntBASIC0.68□□□□□ -2.3
ZNF540Q8NDQ6 SNORA27-201ENST00000384323 126 ntBASIC0.68□□□□□ -2.3
ZNF540Q8NDQ6 SNORA51.10-201ENST00000384418 136 ntBASIC0.68□□□□□ -2.3
ZNF540Q8NDQ6 RNU6-125P-201ENST00000384505 107 ntBASIC0.68□□□□□ -2.3
ZNF540Q8NDQ6 SNORA26.6-201ENST00000391256 115 ntBASIC0.68□□□□□ -2.3
ZNF540Q8NDQ6 SNORA26-201ENST00000391286 122 ntBASIC0.68□□□□□ -2.3
ZNF540Q8NDQ6 RNU6-733P-201ENST00000410759 104 ntBASIC0.68□□□□□ -2.3
ZNF540Q8NDQ6 RNU6-847P-201ENST00000411115 108 ntBASIC0.68□□□□□ -2.3
ZNF540Q8NDQ6 AC113410.1-201ENST00000505029 247 ntBASIC0.68□□□□□ -2.3
ZNF540Q8NDQ6 RNU6-998P-201ENST00000515894 101 ntBASIC0.68□□□□□ -2.3
ZNF540Q8NDQ6 RNA5SP236-201ENST00000516169 116 ntBASIC0.68□□□□□ -2.3
ZNF540Q8NDQ6 RNU2-60P-201ENST00000517290 128 ntBASIC0.68□□□□□ -2.3
ZNF540Q8NDQ6 AC133485.1-201ENST00000567176 124 ntBASIC0.68□□□□□ -2.3
ZNF540Q8NDQ6 AC138907.6-201ENST00000568401 126 ntBASIC0.68□□□□□ -2.3
ZNF540Q8NDQ6 MIR8055-201ENST00000610739 97 ntBASIC0.68□□□□□ -2.3
ZNF540Q8NDQ6 MIR6835-201ENST00000621552 64 ntBASIC0.68□□□□□ -2.3
ZNF540Q8NDQ6 MTND5P32-201ENST00000560711 1802 ntBASIC0.68□□□□□ -2.3
ZNF540Q8NDQ6 MIR103A2-201ENST00000362154 78 ntBASIC0.67□□□□□ -2.3
ZNF540Q8NDQ6 SNORA1.2-201ENST00000365189 134 ntBASIC0.67□□□□□ -2.3
ZNF540Q8NDQ6 Y_RNA.393-201ENST00000383936 102 ntBASIC0.67□□□□□ -2.3
ZNF540Q8NDQ6 RNU6-1189P-201ENST00000383958 107 ntBASIC0.67□□□□□ -2.3
ZNF540Q8NDQ6 Y_RNA.410-201ENST00000383992 113 ntBASIC0.67□□□□□ -2.3
ZNF540Q8NDQ6 MIR624-201ENST00000385217 97 ntBASIC0.67□□□□□ -2.3
ZNF540Q8NDQ6 TRAJ2-201ENST00000390535 66 ntAPPRIS P1 BASIC0.67□□□□□ -2.3
ZNF540Q8NDQ6 RNA5SP95-201ENST00000410319 137 ntBASIC0.67□□□□□ -2.3
ZNF540Q8NDQ6 HMGN1P33-201ENST00000432945 451 ntBASIC0.67□□□□□ -2.3
ZNF540Q8NDQ6 RNU7-73P-201ENST00000458743 63 ntBASIC0.67□□□□□ -2.3
ZNF540Q8NDQ6 U7.7-201ENST00000459276 60 ntBASIC0.67□□□□□ -2.3
ZNF540Q8NDQ6 RPS29P24-201ENST00000486345 171 ntBASIC0.67□□□□□ -2.3
ZNF540Q8NDQ6 SNORD116-25-201ENST00000516517 92 ntBASIC0.67□□□□□ -2.3
ZNF540Q8NDQ6 RNA5SP121-201ENST00000516537 101 ntBASIC0.67□□□□□ -2.3
ZNF540Q8NDQ6 AL590095.2-201ENST00000604136 117 ntBASIC0.67□□□□□ -2.3
ZNF540Q8NDQ6 uc_338.6-201ENST00000613544 171 ntBASIC0.67□□□□□ -2.3
ZNF540Q8NDQ6 Y_RNA.36-201ENST00000362602 112 ntBASIC0.66□□□□□ -2.3
ZNF540Q8NDQ6 Y_RNA.150-201ENST00000363562 102 ntBASIC0.66□□□□□ -2.3
ZNF540Q8NDQ6 MIR605-201ENST00000385078 83 ntBASIC0.66□□□□□ -2.3
ZNF540Q8NDQ6 RNU6-394P-201ENST00000410735 107 ntBASIC0.66□□□□□ -2.3
ZNF540Q8NDQ6 AC244023.1-201ENST00000426884 112 ntBASIC0.66□□□□□ -2.3
ZNF540Q8NDQ6 RNU7-45P-201ENST00000459460 63 ntBASIC0.66□□□□□ -2.3
ZNF540Q8NDQ6 AC242498.1-201ENST00000604134 111 ntBASIC0.66□□□□□ -2.3
ZNF540Q8NDQ6 AL136317.1-201ENST00000612653 226 ntBASIC0.66□□□□□ -2.3
ZNF540Q8NDQ6 SEPT14P17-201ENST00000617978 177 ntBASIC0.66□□□□□ -2.3
ZNF540Q8NDQ6 Z97988.1-201ENST00000637697 135 ntBASIC0.66□□□□□ -2.3
ZNF540Q8NDQ6 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC0.66□□□□□ -2.3
ZNF540Q8NDQ6 RNU6-369P-201ENST00000362515 102 ntBASIC0.65□□□□□ -2.31
ZNF540Q8NDQ6 Y_RNA.52-201ENST00000362760 96 ntBASIC0.65□□□□□ -2.31
ZNF540Q8NDQ6 SNORD114-26-201ENST00000363543 72 ntBASIC0.65□□□□□ -2.31
ZNF540Q8NDQ6 Y_RNA.251-201ENST00000364551 99 ntBASIC0.65□□□□□ -2.31
ZNF540Q8NDQ6 RNU1-133P-201ENST00000364867 167 ntBASIC0.65□□□□□ -2.31
ZNF540Q8NDQ6 RNU6-1130P-201ENST00000365434 107 ntBASIC0.65□□□□□ -2.31
ZNF540Q8NDQ6 RNU6-886P-201ENST00000384319 105 ntBASIC0.65□□□□□ -2.31
ZNF540Q8NDQ6 RNU6-239P-201ENST00000390990 99 ntBASIC0.65□□□□□ -2.31
ZNF540Q8NDQ6 RNU6-613P-201ENST00000410412 108 ntBASIC0.65□□□□□ -2.31
ZNF540Q8NDQ6 RNA5SP127-201ENST00000411051 133 ntBASIC0.65□□□□□ -2.31
ZNF540Q8NDQ6 AC067940.1-201ENST00000458411 300 ntBASIC0.65□□□□□ -2.31
ZNF540Q8NDQ6 RNU7-197P-201ENST00000458836 62 ntBASIC0.65□□□□□ -2.31
ZNF540Q8NDQ6 snoU13.16-201ENST00000459350 104 ntBASIC0.65□□□□□ -2.31
Retrieved 100 of 98,524 protein–RNA pairs in 114.3 ms