Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 SNORA9.1-201ENST00000362412 131 ntBASIC-0.02□□□□□ -2.41
HDDC3Q8N4P3 Y_RNA.24-201ENST00000362508 103 ntBASIC-0.02□□□□□ -2.41
HDDC3Q8N4P3 RNA5SP98-201ENST00000363158 137 ntBASIC-0.02□□□□□ -2.41
HDDC3Q8N4P3 RNU6-740P-201ENST00000364734 105 ntBASIC-0.02□□□□□ -2.41
HDDC3Q8N4P3 Y_RNA.617-201ENST00000410920 90 ntBASIC-0.02□□□□□ -2.41
HDDC3Q8N4P3 AL008718.3-201ENST00000610217 321 ntBASIC-0.02□□□□□ -2.41
HDDC3Q8N4P3 AP001282.2-201ENST00000616149 309 ntBASIC-0.02□□□□□ -2.41
HDDC3Q8N4P3 MIR8066-201ENST00000617280 78 ntBASIC-0.02□□□□□ -2.41
HDDC3Q8N4P3 RNU6-653P-201ENST00000363074 106 ntBASIC-0.03□□□□□ -2.41
HDDC3Q8N4P3 RNA5SP214-201ENST00000363378 118 ntBASIC-0.03□□□□□ -2.41
HDDC3Q8N4P3 SNORA42.1-201ENST00000363515 137 ntBASIC-0.03□□□□□ -2.41
HDDC3Q8N4P3 RNU6-1229P-201ENST00000364295 107 ntBASIC-0.03□□□□□ -2.41
HDDC3Q8N4P3 Y_RNA.229-201ENST00000364347 113 ntBASIC-0.03□□□□□ -2.41
HDDC3Q8N4P3 Y_RNA.303-201ENST00000364998 94 ntBASIC-0.03□□□□□ -2.41
HDDC3Q8N4P3 Y_RNA.389-201ENST00000383924 113 ntBASIC-0.03□□□□□ -2.41
HDDC3Q8N4P3 RNU6-823P-201ENST00000391042 103 ntBASIC-0.03□□□□□ -2.41
HDDC3Q8N4P3 MIR1252-201ENST00000408861 65 ntBASIC-0.03□□□□□ -2.41
HDDC3Q8N4P3 MTND5P20-201ENST00000448677 143 ntBASIC-0.03□□□□□ -2.41
HDDC3Q8N4P3 LINC01755-201ENST00000455010 453 ntTSL 2 BASIC-0.03□□□□□ -2.41
HDDC3Q8N4P3 MTND3P22-201ENST00000510932 243 ntBASIC-0.03□□□□□ -2.41
HDDC3Q8N4P3 SNORA27.4-201ENST00000516650 95 ntBASIC-0.03□□□□□ -2.41
HDDC3Q8N4P3 Y_RNA.721-201ENST00000517207 102 ntBASIC-0.03□□□□□ -2.41
HDDC3Q8N4P3 MIR4795-201ENST00000584182 89 ntBASIC-0.03□□□□□ -2.41
HDDC3Q8N4P3 AL662814.1-201ENST00000617364 121 ntBASIC-0.03□□□□□ -2.41
HDDC3Q8N4P3 snoU18.1-201ENST00000629629 71 ntBASIC-0.03□□□□□ -2.41
HDDC3Q8N4P3 Y_RNA.13-201ENST00000362403 112 ntBASIC-0.04□□□□□ -2.42
HDDC3Q8N4P3 Y_RNA.66-201ENST00000362862 102 ntBASIC-0.04□□□□□ -2.42
HDDC3Q8N4P3 RNU6V-201ENST00000384105 107 ntBASIC-0.04□□□□□ -2.42
HDDC3Q8N4P3 RNU6ATAC42P-201ENST00000408637 95 ntBASIC-0.04□□□□□ -2.42
HDDC3Q8N4P3 Y_RNA.702-201ENST00000516843 96 ntBASIC-0.04□□□□□ -2.42
HDDC3Q8N4P3 IGLVI-20-201ENST00000519296 130 ntBASIC-0.04□□□□□ -2.42
HDDC3Q8N4P3 AL133255.1-201ENST00000606374 441 ntBASIC-0.04□□□□□ -2.42
HDDC3Q8N4P3 Y_RNA.105-201ENST00000363182 111 ntBASIC-0.05□□□□□ -2.42
HDDC3Q8N4P3 SNORD114-31-201ENST00000363219 75 ntBASIC-0.05□□□□□ -2.42
HDDC3Q8N4P3 Y_RNA.174-201ENST00000363781 105 ntBASIC-0.05□□□□□ -2.42
HDDC3Q8N4P3 Y_RNA.217-201ENST00000364214 105 ntBASIC-0.05□□□□□ -2.42
HDDC3Q8N4P3 Y_RNA.634-201ENST00000364811 113 ntBASIC-0.05□□□□□ -2.42
HDDC3Q8N4P3 RNU6-302P-201ENST00000365249 107 ntBASIC-0.05□□□□□ -2.42
HDDC3Q8N4P3 Y_RNA.351-201ENST00000365436 96 ntBASIC-0.05□□□□□ -2.42
HDDC3Q8N4P3 Y_RNA.380-201ENST00000365663 111 ntBASIC-0.05□□□□□ -2.42
HDDC3Q8N4P3 Y_RNA.432-201ENST00000384087 111 ntBASIC-0.05□□□□□ -2.42
HDDC3Q8N4P3 Y_RNA.541-201ENST00000384640 113 ntBASIC-0.05□□□□□ -2.42
HDDC3Q8N4P3 RNU2-55P-201ENST00000411146 174 ntBASIC-0.05□□□□□ -2.42
HDDC3Q8N4P3 Y_RNA.641-201ENST00000459414 105 ntBASIC-0.05□□□□□ -2.42
HDDC3Q8N4P3 RNU7-45P-201ENST00000459460 63 ntBASIC-0.05□□□□□ -2.42
HDDC3Q8N4P3 RNA5SP227-201ENST00000516184 113 ntBASIC-0.05□□□□□ -2.42
HDDC3Q8N4P3 RNU6-135P-201ENST00000516769 101 ntBASIC-0.05□□□□□ -2.42
HDDC3Q8N4P3 MIR369-201ENST00000362155 70 ntBASIC-0.06□□□□□ -2.42
HDDC3Q8N4P3 Y_RNA.91-201ENST00000363042 107 ntBASIC-0.06□□□□□ -2.42
HDDC3Q8N4P3 RNU4-73P-201ENST00000363164 141 ntBASIC-0.06□□□□□ -2.42
HDDC3Q8N4P3 Y_RNA.645-201ENST00000391229 102 ntBASIC-0.06□□□□□ -2.42
HDDC3Q8N4P3 SNORA26.6-201ENST00000391256 115 ntBASIC-0.06□□□□□ -2.42
HDDC3Q8N4P3 Y_RNA.660-201ENST00000516002 120 ntBASIC-0.06□□□□□ -2.42
HDDC3Q8N4P3 MIR3152-201ENST00000579801 74 ntBASIC-0.06□□□□□ -2.42
HDDC3Q8N4P3 AC104408.1-201ENST00000605241 170 ntBASIC-0.06□□□□□ -2.42
HDDC3Q8N4P3 MIR411-201ENST00000362239 96 ntBASIC-0.07□□□□□ -2.42
HDDC3Q8N4P3 SNORD114-9-201ENST00000364370 72 ntBASIC-0.07□□□□□ -2.42
HDDC3Q8N4P3 Y_RNA.395-201ENST00000383945 109 ntBASIC-0.07□□□□□ -2.42
HDDC3Q8N4P3 Y_RNA.454-201ENST00000384224 113 ntBASIC-0.07□□□□□ -2.42
HDDC3Q8N4P3 SNORA72.6-201ENST00000384520 129 ntBASIC-0.07□□□□□ -2.42
HDDC3Q8N4P3 SNORA20-201ENST00000384662 132 ntBASIC-0.07□□□□□ -2.42
HDDC3Q8N4P3 RNU6-121P-201ENST00000410525 99 ntBASIC-0.07□□□□□ -2.42
HDDC3Q8N4P3 Z95118.1-201ENST00000421372 247 ntBASIC-0.07□□□□□ -2.42
HDDC3Q8N4P3 SUMO1P3-201ENST00000439961 304 ntBASIC-0.07□□□□□ -2.42
HDDC3Q8N4P3 AC069271.1-201ENST00000445577 156 ntBASIC-0.07□□□□□ -2.42
HDDC3Q8N4P3 RNU7-80P-201ENST00000459562 61 ntBASIC-0.07□□□□□ -2.42
HDDC3Q8N4P3 RNU7-129P-201ENST00000516128 62 ntBASIC-0.07□□□□□ -2.42
HDDC3Q8N4P3 AC126177.2-201ENST00000552154 452 ntTSL 3 BASIC-0.07□□□□□ -2.42
HDDC3Q8N4P3 MIR7107-201ENST00000611489 80 ntBASIC-0.07□□□□□ -2.42
HDDC3Q8N4P3 MIR6082-201ENST00000613604 109 ntBASIC-0.07□□□□□ -2.42
HDDC3Q8N4P3 Y_RNA.32-201ENST00000362589 110 ntBASIC-0.08□□□□□ -2.42
HDDC3Q8N4P3 Y_RNA.304-201ENST00000365011 112 ntBASIC-0.08□□□□□ -2.42
HDDC3Q8N4P3 Y_RNA.572-201ENST00000384757 98 ntBASIC-0.08□□□□□ -2.42
HDDC3Q8N4P3 MT-TD-201ENST00000387419 68 ntBASIC-0.08□□□□□ -2.42
HDDC3Q8N4P3 AC068658.1-201ENST00000507509 388 ntTSL 2 BASIC-0.08□□□□□ -2.42
HDDC3Q8N4P3 RNY3P15-201ENST00000516297 97 ntBASIC-0.08□□□□□ -2.42
HDDC3Q8N4P3 RNA5SP153-201ENST00000516498 76 ntBASIC-0.08□□□□□ -2.42
HDDC3Q8N4P3 SCARNA16.5-201ENST00000517114 183 ntBASIC-0.08□□□□□ -2.42
HDDC3Q8N4P3 Y_RNA.423-201ENST00000384057 113 ntBASIC-0.09□□□□□ -2.42
HDDC3Q8N4P3 Y_RNA.622-201ENST00000411091 108 ntBASIC-0.09□□□□□ -2.42
HDDC3Q8N4P3 snoU13.19-201ENST00000459148 104 ntBASIC-0.09□□□□□ -2.42
HDDC3Q8N4P3 DLEU2_5.2-201ENST00000610606 84 ntBASIC-0.09□□□□□ -2.42
HDDC3Q8N4P3 Y_RNA.804-201ENST00000615262 101 ntBASIC-0.09□□□□□ -2.42
HDDC3Q8N4P3 DEFB131A-201ENST00000334879 213 ntAPPRIS P1 TSL 1 (best) BASIC-0.1□□□□□ -2.43
HDDC3Q8N4P3 snoU2_19.2-201ENST00000363024 80 ntBASIC-0.1□□□□□ -2.43
HDDC3Q8N4P3 RNU6-770P-201ENST00000363929 105 ntBASIC-0.1□□□□□ -2.43
HDDC3Q8N4P3 RNY4P3-201ENST00000365254 95 ntBASIC-0.1□□□□□ -2.43
HDDC3Q8N4P3 RNU6-484P-201ENST00000384016 107 ntBASIC-0.1□□□□□ -2.43
HDDC3Q8N4P3 RNU6-211P-201ENST00000384047 107 ntBASIC-0.1□□□□□ -2.43
HDDC3Q8N4P3 Y_RNA.431-201ENST00000384086 102 ntBASIC-0.1□□□□□ -2.43
HDDC3Q8N4P3 RNY3P5-201ENST00000384127 102 ntBASIC-0.1□□□□□ -2.43
HDDC3Q8N4P3 MIR215-201ENST00000384858 110 ntBASIC-0.1□□□□□ -2.43
HDDC3Q8N4P3 MIR626-201ENST00000385032 94 ntBASIC-0.1□□□□□ -2.43
HDDC3Q8N4P3 MIR610-201ENST00000385139 96 ntBASIC-0.1□□□□□ -2.43
HDDC3Q8N4P3 PCNPP3-201ENST00000393579 471 ntBASIC-0.1□□□□□ -2.43
HDDC3Q8N4P3 AL353742.1-201ENST00000453455 224 ntTSL 3 BASIC-0.1□□□□□ -2.43
HDDC3Q8N4P3 SNORA31.14-201ENST00000516728 116 ntBASIC-0.1□□□□□ -2.43
HDDC3Q8N4P3 RNU6-765P-201ENST00000516916 99 ntBASIC-0.1□□□□□ -2.43
HDDC3Q8N4P3 MIR548S-201ENST00000581352 82 ntBASIC-0.1□□□□□ -2.43
HDDC3Q8N4P3 AC091304.10-201ENST00000641554 121 ntBASIC-0.1□□□□□ -2.43
Retrieved 100 of 98,524 protein–RNA pairs in 391.3 ms