Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 MTND5P41-201ENST00000517498 206 ntBASIC1.21□□□□□ -2.22
HDAC4P56524 DNAJC19P2-201ENST00000593340 302 ntBASIC1.21□□□□□ -2.22
HDAC4P56524 AC021753.1-201ENST00000635724 168 ntBASIC1.21□□□□□ -2.22
HDAC4P56524 MTND5P32-201ENST00000560711 1802 ntBASIC1.21□□□□□ -2.22
HDAC4P56524 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC1.2□□□□□ -2.22
HDAC4P56524 Y_RNA.251-201ENST00000364551 99 ntBASIC1.2□□□□□ -2.22
HDAC4P56524 Y_RNA.398-201ENST00000383952 99 ntBASIC1.2□□□□□ -2.22
HDAC4P56524 SNORA70.7-201ENST00000384159 133 ntBASIC1.2□□□□□ -2.22
HDAC4P56524 Y_RNA.497-201ENST00000384447 98 ntBASIC1.2□□□□□ -2.22
HDAC4P56524 SNORA75.5-201ENST00000391291 81 ntBASIC1.2□□□□□ -2.22
HDAC4P56524 RNU7-73P-201ENST00000458743 63 ntBASIC1.2□□□□□ -2.22
HDAC4P56524 RNU7-67P-201ENST00000459003 62 ntBASIC1.2□□□□□ -2.22
HDAC4P56524 RNU7-96P-201ENST00000459535 64 ntBASIC1.2□□□□□ -2.22
HDAC4P56524 SNORD79.1-201ENST00000516069 84 ntBASIC1.2□□□□□ -2.22
HDAC4P56524 RNA5SP236-201ENST00000516169 116 ntBASIC1.2□□□□□ -2.22
HDAC4P56524 RNU6-1149P-201ENST00000516810 97 ntBASIC1.2□□□□□ -2.22
HDAC4P56524 AC024382.1-201ENST00000520224 292 ntTSL 3 BASIC1.2□□□□□ -2.22
HDAC4P56524 MIR3646-201ENST00000578301 84 ntBASIC1.2□□□□□ -2.22
HDAC4P56524 MIR8055-201ENST00000610739 97 ntBASIC1.2□□□□□ -2.22
HDAC4P56524 AC027335.2-201ENST00000624030 375 ntBASIC1.2□□□□□ -2.22
HDAC4P56524 MGAT4C-209ENST00000611864 25116 ntAPPRIS P1 TSL 5 BASIC1.2□□□□□ -2.22
HDAC4P56524 SNORA80D-201ENST00000384488 135 ntBASIC1.19□□□□□ -2.22
HDAC4P56524 SNORD12-201ENST00000391002 90 ntBASIC1.19□□□□□ -2.22
HDAC4P56524 RNU7-197P-201ENST00000458836 62 ntBASIC1.19□□□□□ -2.22
HDAC4P56524 RNU2-11P-201ENST00000459191 187 ntBASIC1.19□□□□□ -2.22
HDAC4P56524 snoU13.16-201ENST00000459350 104 ntBASIC1.19□□□□□ -2.22
HDAC4P56524 RNU6-1212P-201ENST00000517023 104 ntBASIC1.19□□□□□ -2.22
HDAC4P56524 RNA5SP404-201ENST00000517118 132 ntBASIC1.19□□□□□ -2.22
HDAC4P56524 AC091932.4-201ENST00000623386 200 ntBASIC1.19□□□□□ -2.22
HDAC4P56524 MIR6844-201ENST00000637122 62 ntBASIC1.19□□□□□ -2.22
HDAC4P56524 RNU6-654P-201ENST00000364373 107 ntBASIC1.18□□□□□ -2.22
HDAC4P56524 Y_RNA.351-201ENST00000365436 96 ntBASIC1.18□□□□□ -2.22
HDAC4P56524 SNORA26.6-201ENST00000391256 115 ntBASIC1.18□□□□□ -2.22
HDAC4P56524 MIR548J-201ENST00000408833 112 ntBASIC1.18□□□□□ -2.22
HDAC4P56524 AL591704.2-201ENST00000421658 181 ntBASIC1.18□□□□□ -2.22
HDAC4P56524 AL035398.1-201ENST00000430869 322 ntBASIC1.18□□□□□ -2.22
HDAC4P56524 HMGN1P33-201ENST00000432945 451 ntBASIC1.18□□□□□ -2.22
HDAC4P56524 RNU6-255P-201ENST00000516957 105 ntBASIC1.18□□□□□ -2.22
HDAC4P56524 AL020996.3-201ENST00000606617 222 ntBASIC1.18□□□□□ -2.22
HDAC4P56524 MIR6516-201ENST00000630554 81 ntBASIC1.18□□□□□ -2.22
HDAC4P56524 IL6ST-203ENST00000381287 8667 ntTSL 5 BASIC1.18□□□□□ -2.22
HDAC4P56524 HECTD2-202ENST00000371667 4354 ntTSL 1 (best) BASIC1.17□□□□□ -2.22
HDAC4P56524 Y_RNA.8-201ENST00000362353 102 ntBASIC1.17□□□□□ -2.22
HDAC4P56524 RNU4-11P-201ENST00000365287 132 ntBASIC1.17□□□□□ -2.22
HDAC4P56524 SNORD116-18-201ENST00000383961 92 ntBASIC1.17□□□□□ -2.22
HDAC4P56524 Y_RNA.464-201ENST00000384282 110 ntBASIC1.17□□□□□ -2.22
HDAC4P56524 MIR1285-1-201ENST00000408593 84 ntBASIC1.17□□□□□ -2.22
HDAC4P56524 RNU7-21P-201ENST00000459430 62 ntBASIC1.17□□□□□ -2.22
HDAC4P56524 RNU7-45P-201ENST00000459460 63 ntBASIC1.17□□□□□ -2.22
HDAC4P56524 OR2A41P-201ENST00000473586 105 ntBASIC1.17□□□□□ -2.22
HDAC4P56524 HSPE1P19-201ENST00000603327 295 ntBASIC1.17□□□□□ -2.22
HDAC4P56524 MIR342-201ENST00000362212 99 ntBASIC1.16□□□□□ -2.22
HDAC4P56524 RNU6-508P-201ENST00000363231 103 ntBASIC1.16□□□□□ -2.22
HDAC4P56524 Y_RNA.170-201ENST00000363746 110 ntBASIC1.16□□□□□ -2.22
HDAC4P56524 RNU6-151P-201ENST00000364158 107 ntBASIC1.16□□□□□ -2.22
HDAC4P56524 RNU6-125P-201ENST00000384505 107 ntBASIC1.16□□□□□ -2.22
HDAC4P56524 RNU4ATAC11P-201ENST00000515939 126 ntBASIC1.16□□□□□ -2.22
HDAC4P56524 AC131055.1-201ENST00000584626 316 ntBASIC1.16□□□□□ -2.22
HDAC4P56524 Y_RNA.778-201ENST00000620203 90 ntBASIC1.16□□□□□ -2.22
HDAC4P56524 Z97988.1-201ENST00000637697 135 ntBASIC1.16□□□□□ -2.22
HDAC4P56524 ZNF518A-210ENST00000624776 7994 ntAPPRIS P1 TSL 1 (best) BASIC1.15□□□□□ -2.22
HDAC4P56524 AP003174.1-201ENST00000306533 376 ntTSL 2 BASIC1.15□□□□□ -2.23
HDAC4P56524 SNORA22-201ENST00000383907 134 ntBASIC1.15□□□□□ -2.23
HDAC4P56524 RNU6-449P-201ENST00000383914 107 ntBASIC1.15□□□□□ -2.23
HDAC4P56524 SNORA22C-201ENST00000384614 134 ntBASIC1.15□□□□□ -2.23
HDAC4P56524 AC063976.4-201ENST00000421971 163 ntBASIC1.15□□□□□ -2.23
HDAC4P56524 AC244023.1-201ENST00000426884 112 ntBASIC1.15□□□□□ -2.23
HDAC4P56524 RPS29P28-201ENST00000446439 141 ntBASIC1.15□□□□□ -2.23
HDAC4P56524 RNU7-53P-201ENST00000516705 60 ntBASIC1.15□□□□□ -2.23
HDAC4P56524 RNU11-2P-201ENST00000516898 142 ntBASIC1.15□□□□□ -2.23
HDAC4P56524 AC090155.2-201ENST00000518854 267 ntTSL 3 BASIC1.15□□□□□ -2.23
HDAC4P56524 AC242498.1-201ENST00000604134 111 ntBASIC1.15□□□□□ -2.23
HDAC4P56524 SEPT14P17-201ENST00000617978 177 ntBASIC1.15□□□□□ -2.23
HDAC4P56524 SENP7-207ENST00000394095 4945 ntAPPRIS P3 TSL 1 (best) BASIC1.14□□□□□ -2.23
HDAC4P56524 EYS-205ENST00000393380 5450 ntTSL 1 (best) BASIC1.14□□□□□ -2.23
HDAC4P56524 RNU6-209P-201ENST00000384118 107 ntBASIC1.14□□□□□ -2.23
HDAC4P56524 RNA5SP95-201ENST00000410319 137 ntBASIC1.14□□□□□ -2.23
HDAC4P56524 AC002429.1-201ENST00000437672 148 ntBASIC1.14□□□□□ -2.23
HDAC4P56524 AC112693.2-201ENST00000556538 232 ntBASIC1.14□□□□□ -2.23
HDAC4P56524 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC1.14□□□□□ -2.23
HDAC4P56524 AL596211.1-201ENST00000569873 2277 ntBASIC1.14□□□□□ -2.23
HDAC4P56524 RNU1-124P-201ENST00000363861 145 ntBASIC1.13□□□□□ -2.23
HDAC4P56524 SNORD37.2-201ENST00000391075 66 ntBASIC1.13□□□□□ -2.23
HDAC4P56524 RNU6-613P-201ENST00000410412 108 ntBASIC1.13□□□□□ -2.23
HDAC4P56524 AL353614.1-201ENST00000445631 206 ntTSL 5 BASIC1.13□□□□□ -2.23
HDAC4P56524 RNU7-80P-201ENST00000459562 61 ntBASIC1.13□□□□□ -2.23
HDAC4P56524 Y_RNA.686-201ENST00000516548 134 ntBASIC1.13□□□□□ -2.23
HDAC4P56524 RN7SL793P-201ENST00000583259 296 ntBASIC1.13□□□□□ -2.23
HDAC4P56524 Y_RNA.330-201ENST00000365230 109 ntBASIC1.12□□□□□ -2.23
HDAC4P56524 Y_RNA.506-201ENST00000384494 102 ntBASIC1.12□□□□□ -2.23
HDAC4P56524 RNU6-602P-201ENST00000411155 105 ntBASIC1.12□□□□□ -2.23
HDAC4P56524 POLR2J4-204ENST00000418424 324 ntBASIC1.12□□□□□ -2.23
HDAC4P56524 RNU7-90P-201ENST00000459216 62 ntBASIC1.12□□□□□ -2.23
HDAC4P56524 RNU7-200P-201ENST00000516105 62 ntBASIC1.12□□□□□ -2.23
HDAC4P56524 MIR2115-201ENST00000516657 100 ntBASIC1.12□□□□□ -2.23
HDAC4P56524 MIR6717-201ENST00000622747 73 ntBASIC1.12□□□□□ -2.23
HDAC4P56524 AC008163.1-202ENST00000636004 2889 ntBASIC1.12□□□□□ -2.23
HDAC4P56524 RNU6-349P-201ENST00000362402 107 ntBASIC1.11□□□□□ -2.23
HDAC4P56524 SNORD114-27-201ENST00000363766 70 ntBASIC1.11□□□□□ -2.23
HDAC4P56524 MIR19B1-201ENST00000384829 87 ntBASIC1.11□□□□□ -2.23
Retrieved 100 of 98,524 protein–RNA pairs in 176.6 ms