Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 RPS29P24-201ENST00000486345 171 ntBASIC1.06□□□□□ -2.24
CTCFP49711 MIR2115-201ENST00000516657 100 ntBASIC1.06□□□□□ -2.24
CTCFP49711 MIR376A2-201ENST00000636782 80 ntBASIC1.06□□□□□ -2.24
CTCFP49711 RNU6-1187P-201ENST00000364771 110 ntBASIC1.05□□□□□ -2.24
CTCFP49711 RNU6-1189P-201ENST00000383958 107 ntBASIC1.05□□□□□ -2.24
CTCFP49711 Y_RNA.440-201ENST00000384120 114 ntBASIC1.05□□□□□ -2.24
CTCFP49711 snosnR66.1-201ENST00000391095 99 ntBASIC1.05□□□□□ -2.24
CTCFP49711 SNORA79-201ENST00000408376 140 ntBASIC1.05□□□□□ -2.24
CTCFP49711 RNU7-73P-201ENST00000458743 63 ntBASIC1.05□□□□□ -2.24
CTCFP49711 AC106800.4-201ENST00000614905 153 ntBASIC1.05□□□□□ -2.24
CTCFP49711 RNU6-396P-201ENST00000365369 105 ntBASIC1.04□□□□□ -2.24
CTCFP49711 RNU6-913P-201ENST00000390913 95 ntBASIC1.04□□□□□ -2.24
CTCFP49711 MIR1265-201ENST00000408444 86 ntBASIC1.04□□□□□ -2.24
CTCFP49711 RNA5SP95-201ENST00000410319 137 ntBASIC1.04□□□□□ -2.24
CTCFP49711 AC090844.1-201ENST00000422019 156 ntBASIC1.04□□□□□ -2.24
CTCFP49711 Y_RNA.797-201ENST00000515977 94 ntBASIC1.04□□□□□ -2.24
CTCFP49711 RNU6-958P-201ENST00000516995 106 ntBASIC1.04□□□□□ -2.24
CTCFP49711 AC009779.6-201ENST00000603972 165 ntBASIC1.04□□□□□ -2.24
CTCFP49711 Y_RNA.200-201ENST00000364018 102 ntBASIC1.03□□□□□ -2.24
CTCFP49711 RNU6-125P-201ENST00000384505 107 ntBASIC1.03□□□□□ -2.24
CTCFP49711 Y_RNA.542-201ENST00000384641 111 ntBASIC1.03□□□□□ -2.24
CTCFP49711 MT-TN-201ENST00000387400 73 ntBASIC1.03□□□□□ -2.24
CTCFP49711 TRAJ2-201ENST00000390535 66 ntAPPRIS P1 BASIC1.03□□□□□ -2.24
CTCFP49711 RNU6-918P-201ENST00000391219 106 ntBASIC1.03□□□□□ -2.24
CTCFP49711 AL135790.1-201ENST00000427161 157 ntTSL 3 BASIC1.03□□□□□ -2.24
CTCFP49711 AC097716.1-201ENST00000509136 180 ntTSL 2 BASIC1.03□□□□□ -2.24
CTCFP49711 MIR3129-201ENST00000581095 76 ntBASIC1.03□□□□□ -2.24
CTCFP49711 AL365205.2-201ENST00000594586 68 ntBASIC1.03□□□□□ -2.24
CTCFP49711 MIR411-201ENST00000362239 96 ntBASIC1.02□□□□□ -2.25
CTCFP49711 Y_RNA.182-201ENST00000363880 111 ntBASIC1.02□□□□□ -2.25
CTCFP49711 RNU6-978P-201ENST00000364371 103 ntBASIC1.02□□□□□ -2.25
CTCFP49711 Y_RNA.489-201ENST00000384410 101 ntBASIC1.02□□□□□ -2.25
CTCFP49711 RNU4-70P-201ENST00000384579 139 ntBASIC1.02□□□□□ -2.25
CTCFP49711 RNU7-96P-201ENST00000459535 64 ntBASIC1.02□□□□□ -2.25
CTCFP49711 RNU6-998P-201ENST00000515894 101 ntBASIC1.02□□□□□ -2.25
CTCFP49711 RNU7-53P-201ENST00000516705 60 ntBASIC1.02□□□□□ -2.25
CTCFP49711 RNU6-94P-201ENST00000607728 107 ntBASIC1.02□□□□□ -2.25
CTCFP49711 AP003174.1-201ENST00000306533 376 ntTSL 2 BASIC1.01□□□□□ -2.25
CTCFP49711 MIR377-201ENST00000362145 69 ntBASIC1.01□□□□□ -2.25
CTCFP49711 Y_RNA.83-201ENST00000363005 113 ntBASIC1.01□□□□□ -2.25
CTCFP49711 SNORD113.3-201ENST00000364630 78 ntBASIC1.01□□□□□ -2.25
CTCFP49711 RNU6-275P-201ENST00000364910 107 ntBASIC1.01□□□□□ -2.25
CTCFP49711 RNU6-1292P-201ENST00000383856 107 ntBASIC1.01□□□□□ -2.25
CTCFP49711 Y_RNA.435-201ENST00000384095 112 ntBASIC1.01□□□□□ -2.25
CTCFP49711 RNU6ATAC4P-201ENST00000387446 126 ntBASIC1.01□□□□□ -2.25
CTCFP49711 MIR942-201ENST00000401111 86 ntBASIC1.01□□□□□ -2.25
CTCFP49711 SNORD111-201ENST00000408139 94 ntBASIC1.01□□□□□ -2.25
CTCFP49711 Y_RNA.618-201ENST00000410949 107 ntBASIC1.01□□□□□ -2.25
CTCFP49711 AL035398.1-201ENST00000430869 322 ntBASIC1.01□□□□□ -2.25
CTCFP49711 AC130289.1-201ENST00000577321 73 ntBASIC1.01□□□□□ -2.25
CTCFP49711 MIR378D2-201ENST00000580636 98 ntBASIC1.01□□□□□ -2.25
CTCFP49711 MIR5197-201ENST00000583721 112 ntBASIC1.01□□□□□ -2.25
CTCFP49711 MIR8055-201ENST00000610739 97 ntBASIC1.01□□□□□ -2.25
CTCFP49711 CXADR-202ENST00000356275 270 ntTSL 1 (best) BASIC1□□□□□ -2.25
CTCFP49711 Y_RNA.168-201ENST00000363740 102 ntBASIC1□□□□□ -2.25
CTCFP49711 Y_RNA.401-201ENST00000383965 117 ntBASIC1□□□□□ -2.25
CTCFP49711 RNU6-643P-201ENST00000384018 107 ntBASIC1□□□□□ -2.25
CTCFP49711 AL138752.1-201ENST00000452964 351 ntBASIC1□□□□□ -2.25
CTCFP49711 RPL39P28-201ENST00000465655 155 ntBASIC1□□□□□ -2.25
CTCFP49711 PDCD5P2-201ENST00000507570 312 ntBASIC1□□□□□ -2.25
CTCFP49711 ACA64.5-201ENST00000516207 127 ntBASIC1□□□□□ -2.25
CTCFP49711 U6.106-201ENST00000636360 105 ntBASIC1□□□□□ -2.25
CTCFP49711 Z97988.1-201ENST00000637697 135 ntBASIC1□□□□□ -2.25
CTCFP49711 Y_RNA.75-201ENST00000362927 97 ntBASIC0.99□□□□□ -2.25
CTCFP49711 Y_RNA.188-201ENST00000363952 111 ntBASIC0.99□□□□□ -2.25
CTCFP49711 RNU6-580P-201ENST00000365159 107 ntBASIC0.99□□□□□ -2.25
CTCFP49711 RNU6-47P-201ENST00000383866 107 ntBASIC0.99□□□□□ -2.25
CTCFP49711 SNORA2B-201ENST00000384583 137 ntBASIC0.99□□□□□ -2.25
CTCFP49711 MIR508-201ENST00000384857 115 ntBASIC0.99□□□□□ -2.25
CTCFP49711 AC244023.1-201ENST00000426884 112 ntBASIC0.99□□□□□ -2.25
CTCFP49711 RNA5SP255-201ENST00000516370 107 ntBASIC0.99□□□□□ -2.25
CTCFP49711 SNORD116-25-201ENST00000516517 92 ntBASIC0.99□□□□□ -2.25
CTCFP49711 Z83818.1-201ENST00000603584 150 ntBASIC0.99□□□□□ -2.25
CTCFP49711 AC242498.1-201ENST00000604134 111 ntBASIC0.99□□□□□ -2.25
CTCFP49711 MIR6835-201ENST00000621552 64 ntBASIC0.99□□□□□ -2.25
CTCFP49711 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC0.99□□□□□ -2.25
CTCFP49711 RNA5SP347-201ENST00000362445 119 ntBASIC0.98□□□□□ -2.25
CTCFP49711 MT-TG-201ENST00000387429 68 ntBASIC0.98□□□□□ -2.25
CTCFP49711 MIR548I3-201ENST00000408378 149 ntBASIC0.98□□□□□ -2.25
CTCFP49711 RNU6-1190P-201ENST00000410811 104 ntBASIC0.98□□□□□ -2.25
CTCFP49711 FABP5P4-201ENST00000437203 171 ntBASIC0.98□□□□□ -2.25
CTCFP49711 DIP2A-IT1-201ENST00000442434 428 ntTSL 2 BASIC0.98□□□□□ -2.25
CTCFP49711 RNU2-11P-201ENST00000459191 187 ntBASIC0.98□□□□□ -2.25
CTCFP49711 RNU6-1271P-201ENST00000517049 105 ntBASIC0.98□□□□□ -2.25
CTCFP49711 MIR4264-201ENST00000583520 66 ntBASIC0.98□□□□□ -2.25
CTCFP49711 RNU6-379P-201ENST00000363813 104 ntBASIC0.97□□□□□ -2.25
CTCFP49711 RNU6-205P-201ENST00000390858 107 ntBASIC0.97□□□□□ -2.25
CTCFP49711 RNU2-64P-201ENST00000411315 191 ntBASIC0.97□□□□□ -2.25
CTCFP49711 MRPS18CP4-201ENST00000535821 231 ntBASIC0.97□□□□□ -2.25
CTCFP49711 MIR4653-201ENST00000585107 83 ntBASIC0.97□□□□□ -2.25
CTCFP49711 AP000753.3-201ENST00000604083 169 ntBASIC0.97□□□□□ -2.25
CTCFP49711 RNU6-1020P-201ENST00000363684 107 ntBASIC0.96□□□□□ -2.26
CTCFP49711 AC243829.3-201ENST00000622177 108 ntBASIC0.96□□□□□ -2.26
CTCFP49711 SNORA1.1-201ENST00000364671 133 ntBASIC0.95□□□□□ -2.26
CTCFP49711 Y_RNA.351-201ENST00000365436 96 ntBASIC0.95□□□□□ -2.26
CTCFP49711 AC073127.1-201ENST00000447336 333 ntTSL 3 BASIC0.95□□□□□ -2.26
CTCFP49711 FAM71BP1-201ENST00000604431 523 ntBASIC0.95□□□□□ -2.26
CTCFP49711 AC141273.2-201ENST00000618989 130 ntBASIC0.95□□□□□ -2.26
CTCFP49711 ZNF518A-209ENST00000614149 7911 ntAPPRIS P1 TSL 5 BASIC0.94□□□□□ -2.26
CTCFP49711 MIR342-201ENST00000362212 99 ntBASIC0.94□□□□□ -2.26
Retrieved 100 of 98,524 protein–RNA pairs in 111 ms