Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 RNU6-493P-201ENST00000391321 108 ntBASIC0.58□□□□□ -2.32
CDX1P47902 MIR938-201ENST00000401216 83 ntBASIC0.58□□□□□ -2.32
CDX1P47902 AC023051.1-201ENST00000414098 876 ntTSL 5 BASIC0.58□□□□□ -2.32
CDX1P47902 MTND2P23-201ENST00000422990 651 ntBASIC0.58□□□□□ -2.32
CDX1P47902 MTCYBP9-201ENST00000431021 303 ntBASIC0.58□□□□□ -2.32
CDX1P47902 SEPT7P4-201ENST00000437076 306 ntBASIC0.58□□□□□ -2.32
CDX1P47902 Y_RNA.797-201ENST00000515977 94 ntBASIC0.58□□□□□ -2.32
CDX1P47902 SNORD116-25-201ENST00000516517 92 ntBASIC0.58□□□□□ -2.32
CDX1P47902 AC004817.2-201ENST00000561794 651 ntBASIC0.58□□□□□ -2.32
CDX1P47902 Z83818.1-201ENST00000603584 150 ntBASIC0.58□□□□□ -2.32
CDX1P47902 MIR6835-201ENST00000621552 64 ntBASIC0.58□□□□□ -2.32
CDX1P47902 MIR6717-201ENST00000622747 73 ntBASIC0.58□□□□□ -2.32
CDX1P47902 AL596211.1-201ENST00000569873 2277 ntBASIC0.57□□□□□ -2.32
CDX1P47902 Y_RNA.162-201ENST00000363683 102 ntBASIC0.57□□□□□ -2.32
CDX1P47902 RNU6-1292P-201ENST00000383856 107 ntBASIC0.57□□□□□ -2.32
CDX1P47902 Y_RNA.477-201ENST00000384352 108 ntBASIC0.57□□□□□ -2.32
CDX1P47902 RNU6-364P-201ENST00000384387 107 ntBASIC0.57□□□□□ -2.32
CDX1P47902 MIR573-201ENST00000384964 99 ntBASIC0.57□□□□□ -2.32
CDX1P47902 RNU4-43P-201ENST00000410628 137 ntBASIC0.57□□□□□ -2.32
CDX1P47902 RNU6-733P-201ENST00000410759 104 ntBASIC0.57□□□□□ -2.32
CDX1P47902 RNU7-56P-201ENST00000458744 62 ntBASIC0.57□□□□□ -2.32
CDX1P47902 RNU7-45P-201ENST00000459460 63 ntBASIC0.57□□□□□ -2.32
CDX1P47902 AC133485.1-201ENST00000567176 124 ntBASIC0.57□□□□□ -2.32
CDX1P47902 AC138907.6-201ENST00000568401 126 ntBASIC0.57□□□□□ -2.32
CDX1P47902 MIR3152-201ENST00000579801 74 ntBASIC0.57□□□□□ -2.32
CDX1P47902 MIR5197-201ENST00000583721 112 ntBASIC0.57□□□□□ -2.32
CDX1P47902 AL590095.2-201ENST00000604136 117 ntBASIC0.57□□□□□ -2.32
CDX1P47902 AC011921.3-201ENST00000605540 361 ntBASIC0.57□□□□□ -2.32
CDX1P47902 RNU2-4P-201ENST00000606190 192 ntBASIC0.57□□□□□ -2.32
CDX1P47902 uc_338.6-201ENST00000613544 171 ntBASIC0.57□□□□□ -2.32
CDX1P47902 AC022709.1-201ENST00000615967 87 ntBASIC0.57□□□□□ -2.32
CDX1P47902 ZNF654-201ENST00000309495 4957 ntAPPRIS P2 TSL 1 (best) BASIC0.56□□□□□ -2.32
CDX1P47902 RNY4P28-201ENST00000365281 93 ntBASIC0.56□□□□□ -2.32
CDX1P47902 RNU6-578P-201ENST00000390980 103 ntBASIC0.56□□□□□ -2.32
CDX1P47902 RNU6-1045P-201ENST00000516321 107 ntBASIC0.56□□□□□ -2.32
CDX1P47902 RNU4-54P-201ENST00000516428 129 ntBASIC0.56□□□□□ -2.32
CDX1P47902 RNA5SP121-201ENST00000516537 101 ntBASIC0.56□□□□□ -2.32
CDX1P47902 MIR378D2-201ENST00000580636 98 ntBASIC0.56□□□□□ -2.32
CDX1P47902 MIR6515-201ENST00000619843 57 ntBASIC0.56□□□□□ -2.32
CDX1P47902 MIR376A2-201ENST00000636782 80 ntBASIC0.56□□□□□ -2.32
CDX1P47902 HECTD2-202ENST00000371667 4354 ntTSL 1 (best) BASIC0.55□□□□□ -2.32
CDX1P47902 Y_RNA.133-201ENST00000363428 110 ntBASIC0.55□□□□□ -2.32
CDX1P47902 RNY1-201ENST00000364228 113 ntBASIC0.55□□□□□ -2.32
CDX1P47902 RNU6-923P-201ENST00000364753 107 ntBASIC0.55□□□□□ -2.32
CDX1P47902 Y_RNA.562-201ENST00000384695 113 ntBASIC0.55□□□□□ -2.32
CDX1P47902 RNU6-1319P-201ENST00000390855 104 ntBASIC0.55□□□□□ -2.32
CDX1P47902 RNU6-747P-201ENST00000390928 104 ntBASIC0.55□□□□□ -2.32
CDX1P47902 RNU6-241P-201ENST00000391148 104 ntBASIC0.55□□□□□ -2.32
CDX1P47902 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC0.55□□□□□ -2.32
CDX1P47902 MIR1257-201ENST00000408490 117 ntBASIC0.55□□□□□ -2.32
CDX1P47902 RNU6-447P-201ENST00000410293 104 ntBASIC0.55□□□□□ -2.32
CDX1P47902 RNU6-1118P-201ENST00000410382 104 ntBASIC0.55□□□□□ -2.32
CDX1P47902 RNU6-1076P-201ENST00000410397 104 ntBASIC0.55□□□□□ -2.32
CDX1P47902 RNU6-355P-201ENST00000410427 104 ntBASIC0.55□□□□□ -2.32
CDX1P47902 RNU6-791P-201ENST00000410467 104 ntBASIC0.55□□□□□ -2.32
CDX1P47902 RNU6-705P-201ENST00000410601 104 ntBASIC0.55□□□□□ -2.32
CDX1P47902 RNU6-1100P-201ENST00000410691 104 ntBASIC0.55□□□□□ -2.32
CDX1P47902 RNU6-860P-201ENST00000410860 104 ntBASIC0.55□□□□□ -2.32
CDX1P47902 RNU6-177P-201ENST00000411257 104 ntBASIC0.55□□□□□ -2.32
CDX1P47902 RNU6-1217P-201ENST00000411276 104 ntBASIC0.55□□□□□ -2.32
CDX1P47902 RNU6-785P-201ENST00000411324 104 ntBASIC0.55□□□□□ -2.32
CDX1P47902 RNU7-185P-201ENST00000459215 60 ntBASIC0.55□□□□□ -2.32
CDX1P47902 MTND1P19-201ENST00000511780 315 ntBASIC0.55□□□□□ -2.32
CDX1P47902 AC018659.1-201ENST00000551083 169 ntBASIC0.55□□□□□ -2.32
CDX1P47902 AL365205.2-201ENST00000594586 68 ntBASIC0.55□□□□□ -2.32
CDX1P47902 U6.90-201ENST00000614007 104 ntBASIC0.55□□□□□ -2.32
CDX1P47902 U6.70-201ENST00000620287 104 ntBASIC0.55□□□□□ -2.32
CDX1P47902 AC091932.4-201ENST00000623386 200 ntBASIC0.55□□□□□ -2.32
CDX1P47902 SNORA20-201ENST00000384662 132 ntBASIC0.54□□□□□ -2.32
CDX1P47902 RNU6-1237P-201ENST00000384777 107 ntBASIC0.54□□□□□ -2.32
CDX1P47902 MIR568-201ENST00000385036 95 ntBASIC0.54□□□□□ -2.32
CDX1P47902 MIR125B2-201ENST00000385128 89 ntBASIC0.54□□□□□ -2.32
CDX1P47902 RNA5SP237-201ENST00000410414 113 ntBASIC0.54□□□□□ -2.32
CDX1P47902 AL118496.2-201ENST00000448300 230 ntBASIC0.54□□□□□ -2.32
CDX1P47902 RPL39P25-201ENST00000449384 154 ntBASIC0.54□□□□□ -2.32
CDX1P47902 IGHVIII-67-2-201ENST00000519849 88 ntBASIC0.54□□□□□ -2.32
CDX1P47902 AC007991.2-201ENST00000520185 102 ntTSL 5 BASIC0.54□□□□□ -2.32
CDX1P47902 MIR3612-201ENST00000579753 87 ntBASIC0.54□□□□□ -2.32
CDX1P47902 ANGPTL3-201ENST00000371129 2805 ntAPPRIS P1 TSL 1 (best) BASIC0.53□□□□□ -2.32
CDX1P47902 RNU1-133P-201ENST00000364867 167 ntBASIC0.53□□□□□ -2.32
CDX1P47902 Y_RNA.350-201ENST00000365409 98 ntBASIC0.53□□□□□ -2.32
CDX1P47902 RPS27-201ENST00000368567 350 ntAPPRIS P1 TSL 1 (best) BASIC0.53□□□□□ -2.32
CDX1P47902 Y_RNA.478-201ENST00000384358 107 ntBASIC0.53□□□□□ -2.32
CDX1P47902 RNU4-70P-201ENST00000384579 139 ntBASIC0.53□□□□□ -2.32
CDX1P47902 MIR508-201ENST00000384857 115 ntBASIC0.53□□□□□ -2.32
CDX1P47902 MT-TF-201ENST00000387314 71 ntBASIC0.53□□□□□ -2.32
CDX1P47902 SNORA26.6-201ENST00000391256 115 ntBASIC0.53□□□□□ -2.32
CDX1P47902 SCARNA15.1-201ENST00000516384 125 ntBASIC0.53□□□□□ -2.32
CDX1P47902 RNU7-156P-201ENST00000517214 74 ntBASIC0.53□□□□□ -2.32
CDX1P47902 AL162730.1-201ENST00000605734 292 ntBASIC0.53□□□□□ -2.32
CDX1P47902 OMD-201ENST00000375550 2449 ntAPPRIS P1 TSL 1 (best) BASIC0.53□□□□□ -2.33
CDX1P47902 DEFB131A-201ENST00000334879 213 ntAPPRIS P1 TSL 1 (best) BASIC0.52□□□□□ -2.33
CDX1P47902 Y_RNA.121-201ENST00000363309 113 ntBASIC0.52□□□□□ -2.33
CDX1P47902 Y_RNA.182-201ENST00000363880 111 ntBASIC0.52□□□□□ -2.33
CDX1P47902 RNU6-945P-201ENST00000383947 107 ntBASIC0.52□□□□□ -2.33
CDX1P47902 MIR140-201ENST00000385282 100 ntBASIC0.52□□□□□ -2.33
CDX1P47902 Y_RNA.626-201ENST00000411288 95 ntBASIC0.52□□□□□ -2.33
CDX1P47902 MIR4714-201ENST00000580728 77 ntBASIC0.52□□□□□ -2.33
CDX1P47902 AC062037.2-201ENST00000610137 73 ntBASIC0.52□□□□□ -2.33
CDX1P47902 5S_rRNA.15-201ENST00000611169 127 ntBASIC0.52□□□□□ -2.33
Retrieved 100 of 98,524 protein–RNA pairs in 269.6 ms