Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 RNU4ATAC11P-201ENST00000515939 126 ntBASIC1.13□□□□□ -2.23
PTPN9P43378 AC010177.1-201ENST00000547819 366 ntTSL 3 BASIC1.13□□□□□ -2.23
PTPN9P43378 AC112693.2-201ENST00000556538 232 ntBASIC1.13□□□□□ -2.23
PTPN9P43378 AC004148.1-201ENST00000571506 398 ntTSL 5 BASIC1.13□□□□□ -2.23
PTPN9P43378 AP000753.3-201ENST00000604083 169 ntBASIC1.13□□□□□ -2.23
PTPN9P43378 AC011603.4-201ENST00000611325 277 ntBASIC1.13□□□□□ -2.23
PTPN9P43378 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC1.12□□□□□ -2.23
PTPN9P43378 AL596211.1-201ENST00000569873 2277 ntBASIC1.12□□□□□ -2.23
PTPN9P43378 Y_RNA.168-201ENST00000363740 102 ntBASIC1.12□□□□□ -2.23
PTPN9P43378 Y_RNA.251-201ENST00000364551 99 ntBASIC1.12□□□□□ -2.23
PTPN9P43378 RNU6-580P-201ENST00000365159 107 ntBASIC1.12□□□□□ -2.23
PTPN9P43378 RNU6-53P-201ENST00000365367 106 ntBASIC1.12□□□□□ -2.23
PTPN9P43378 Y_RNA.354-201ENST00000365448 111 ntBASIC1.12□□□□□ -2.23
PTPN9P43378 SNORD38B-201ENST00000384690 67 ntBASIC1.12□□□□□ -2.23
PTPN9P43378 RPS29P28-201ENST00000446439 141 ntBASIC1.12□□□□□ -2.23
PTPN9P43378 AC073127.1-201ENST00000447336 333 ntTSL 3 BASIC1.12□□□□□ -2.23
PTPN9P43378 MIR3152-201ENST00000579801 74 ntBASIC1.12□□□□□ -2.23
PTPN9P43378 AC104465.1-201ENST00000611365 139 ntBASIC1.12□□□□□ -2.23
PTPN9P43378 SNORD38B-202ENST00000625943 69 ntBASIC1.12□□□□□ -2.23
PTPN9P43378 MIR342-201ENST00000362212 99 ntBASIC1.11□□□□□ -2.23
PTPN9P43378 Y_RNA.120-201ENST00000363304 110 ntBASIC1.11□□□□□ -2.23
PTPN9P43378 RNU6-151P-201ENST00000364158 107 ntBASIC1.11□□□□□ -2.23
PTPN9P43378 RNU4-11P-201ENST00000365287 132 ntBASIC1.11□□□□□ -2.23
PTPN9P43378 RNU6-1130P-201ENST00000365434 107 ntBASIC1.11□□□□□ -2.23
PTPN9P43378 SNORD116-18-201ENST00000383961 92 ntBASIC1.11□□□□□ -2.23
PTPN9P43378 RNU6-804P-201ENST00000384286 107 ntBASIC1.11□□□□□ -2.23
PTPN9P43378 RNU6-125P-201ENST00000384505 107 ntBASIC1.11□□□□□ -2.23
PTPN9P43378 MIR200A-201ENST00000384875 90 ntBASIC1.11□□□□□ -2.23
PTPN9P43378 Y_RNA.584-201ENST00000391090 114 ntBASIC1.11□□□□□ -2.23
PTPN9P43378 SNORD111-201ENST00000408139 94 ntBASIC1.11□□□□□ -2.23
PTPN9P43378 RPS3AP1-201ENST00000413190 320 ntBASIC1.11□□□□□ -2.23
PTPN9P43378 DIP2A-IT1-201ENST00000442434 428 ntTSL 2 BASIC1.11□□□□□ -2.23
PTPN9P43378 RNU6-893P-201ENST00000458841 100 ntBASIC1.11□□□□□ -2.23
PTPN9P43378 RNU7-40P-201ENST00000516397 64 ntBASIC1.11□□□□□ -2.23
PTPN9P43378 RNU6-113P-201ENST00000516653 101 ntBASIC1.11□□□□□ -2.23
PTPN9P43378 AC106800.4-201ENST00000614905 153 ntBASIC1.11□□□□□ -2.23
PTPN9P43378 MIR6717-201ENST00000622747 73 ntBASIC1.11□□□□□ -2.23
PTPN9P43378 AC008163.1-202ENST00000636004 2889 ntBASIC1.11□□□□□ -2.23
PTPN9P43378 ZGRF1-202ENST00000309071 3347 ntTSL 1 (best) BASIC1.11□□□□□ -2.23
PTPN9P43378 SNORD113.3-201ENST00000364630 78 ntBASIC1.1□□□□□ -2.23
PTPN9P43378 Y_RNA.330-201ENST00000365230 109 ntBASIC1.1□□□□□ -2.23
PTPN9P43378 Y_RNA.400-201ENST00000383963 111 ntBASIC1.1□□□□□ -2.23
PTPN9P43378 RNY1P6-201ENST00000384193 109 ntBASIC1.1□□□□□ -2.23
PTPN9P43378 SNORA20-201ENST00000384662 132 ntBASIC1.1□□□□□ -2.23
PTPN9P43378 RNU6-602P-201ENST00000411155 105 ntBASIC1.1□□□□□ -2.23
PTPN9P43378 AC090844.1-201ENST00000422019 156 ntBASIC1.1□□□□□ -2.23
PTPN9P43378 RNU7-197P-201ENST00000458836 62 ntBASIC1.1□□□□□ -2.23
PTPN9P43378 AC087343.1-201ENST00000477341 475 ntBASIC1.1□□□□□ -2.23
PTPN9P43378 MIR4295-201ENST00000585286 85 ntBASIC1.1□□□□□ -2.23
PTPN9P43378 AC021613.1-201ENST00000623880 111 ntBASIC1.1□□□□□ -2.23
PTPN9P43378 MIR6841-201ENST00000637129 72 ntBASIC1.1□□□□□ -2.23
PTPN9P43378 MGAT4C-209ENST00000611864 25116 ntAPPRIS P1 TSL 5 BASIC1.1□□□□□ -2.23
PTPN9P43378 RNU6-654P-201ENST00000364373 107 ntBASIC1.09□□□□□ -2.23
PTPN9P43378 SNORD18B-201ENST00000365659 72 ntBASIC1.09□□□□□ -2.23
PTPN9P43378 Y_RNA.398-201ENST00000383952 99 ntBASIC1.09□□□□□ -2.23
PTPN9P43378 OR2A41P-201ENST00000473586 105 ntBASIC1.09□□□□□ -2.23
PTPN9P43378 AC036111.3-201ENST00000526389 112 ntBASIC1.09□□□□□ -2.23
PTPN9P43378 MIR4781-201ENST00000585250 76 ntBASIC1.09□□□□□ -2.23
PTPN9P43378 SNORD114-21-201ENST00000606412 72 ntBASIC1.09□□□□□ -2.23
PTPN9P43378 RNU6-349P-201ENST00000362402 107 ntBASIC1.08□□□□□ -2.24
PTPN9P43378 RNU6-209P-201ENST00000384118 107 ntBASIC1.08□□□□□ -2.24
PTPN9P43378 MIR513C-201ENST00000401352 84 ntBASIC1.08□□□□□ -2.24
PTPN9P43378 AL603914.1-201ENST00000401964 204 ntBASIC1.08□□□□□ -2.24
PTPN9P43378 RNU6-1190P-201ENST00000410811 104 ntBASIC1.08□□□□□ -2.24
PTPN9P43378 AC244023.1-201ENST00000426884 112 ntBASIC1.08□□□□□ -2.24
PTPN9P43378 HMGN1P33-201ENST00000432945 451 ntBASIC1.08□□□□□ -2.24
PTPN9P43378 RNU2-60P-201ENST00000517290 128 ntBASIC1.08□□□□□ -2.24
PTPN9P43378 MIR548X2-201ENST00000579776 100 ntBASIC1.08□□□□□ -2.24
PTPN9P43378 HSPE1P19-201ENST00000603327 295 ntBASIC1.08□□□□□ -2.24
PTPN9P43378 AC242498.1-201ENST00000604134 111 ntBASIC1.08□□□□□ -2.24
PTPN9P43378 RNY1P5-201ENST00000383890 115 ntBASIC1.07□□□□□ -2.24
PTPN9P43378 PNRC2-204ENST00000579103 171 ntTSL 2 BASIC1.07□□□□□ -2.24
PTPN9P43378 IL6ST-203ENST00000381287 8667 ntTSL 5 BASIC1.07□□□□□ -2.24
PTPN9P43378 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC1.07□□□□□ -2.24
PTPN9P43378 Y_RNA.4-201ENST00000362333 112 ntBASIC1.06□□□□□ -2.24
PTPN9P43378 RNU4-38P-201ENST00000364472 129 ntBASIC1.06□□□□□ -2.24
PTPN9P43378 FABP5P4-201ENST00000437203 171 ntBASIC1.06□□□□□ -2.24
PTPN9P43378 RNU7-200P-201ENST00000516105 62 ntBASIC1.06□□□□□ -2.24
PTPN9P43378 AC032019.2-201ENST00000584916 403 ntTSL 5 BASIC1.06□□□□□ -2.24
PTPN9P43378 AC021753.1-201ENST00000635724 168 ntBASIC1.06□□□□□ -2.24
PTPN9P43378 AL391516.1-201ENST00000554380 2449 ntBASIC1.06□□□□□ -2.24
PTPN9P43378 Y_RNA.8-201ENST00000362353 102 ntBASIC1.05□□□□□ -2.24
PTPN9P43378 Y_RNA.170-201ENST00000363746 110 ntBASIC1.05□□□□□ -2.24
PTPN9P43378 Y_RNA.215-201ENST00000364204 112 ntBASIC1.05□□□□□ -2.24
PTPN9P43378 SNORD114-24-201ENST00000365029 72 ntBASIC1.05□□□□□ -2.24
PTPN9P43378 SNORA22-201ENST00000383907 134 ntBASIC1.05□□□□□ -2.24
PTPN9P43378 SNORA2B-201ENST00000384583 137 ntBASIC1.05□□□□□ -2.24
PTPN9P43378 SNORA22C-201ENST00000384614 134 ntBASIC1.05□□□□□ -2.24
PTPN9P43378 snoU13.2-201ENST00000459201 104 ntBASIC1.05□□□□□ -2.24
PTPN9P43378 RNU7-45P-201ENST00000459460 63 ntBASIC1.05□□□□□ -2.24
PTPN9P43378 CLRN1-AS1.1-201ENST00000615643 79 ntBASIC1.05□□□□□ -2.24
PTPN9P43378 AC012676.2-201ENST00000619258 186 ntBASIC1.05□□□□□ -2.24
PTPN9P43378 AP001340.1-201ENST00000624405 217 ntBASIC1.05□□□□□ -2.24
PTPN9P43378 EYS-205ENST00000393380 5450 ntTSL 1 (best) BASIC1.04□□□□□ -2.24
PTPN9P43378 SNORA22.1-201ENST00000362701 134 ntBASIC1.04□□□□□ -2.24
PTPN9P43378 Y_RNA.164-201ENST00000363709 102 ntBASIC1.04□□□□□ -2.24
PTPN9P43378 RNY1P11-201ENST00000363759 113 ntBASIC1.04□□□□□ -2.24
PTPN9P43378 MIR563-201ENST00000385080 79 ntBASIC1.04□□□□□ -2.24
PTPN9P43378 MTND5P41-201ENST00000517498 206 ntBASIC1.04□□□□□ -2.24
PTPN9P43378 RNU7-62P-201ENST00000458856 62 ntBASIC1.03□□□□□ -2.24
Retrieved 100 of 98,524 protein–RNA pairs in 689.4 ms