Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 RNU7-62P-201ENST00000458856 62 ntBASIC0.59□□□□□ -2.31
PTPN4P29074 RNU2-11P-201ENST00000459191 187 ntBASIC0.59□□□□□ -2.31
PTPN4P29074 AC137770.1-201ENST00000504620 530 ntTSL 3 BASIC0.59□□□□□ -2.31
PTPN4P29074 RNU6-1045P-201ENST00000516321 107 ntBASIC0.59□□□□□ -2.31
PTPN4P29074 MIR4719-201ENST00000585233 84 ntBASIC0.59□□□□□ -2.31
PTPN4P29074 SNORD38B-202ENST00000625943 69 ntBASIC0.59□□□□□ -2.31
PTPN4P29074 SNORD27-201ENST00000363981 72 ntBASIC0.58□□□□□ -2.32
PTPN4P29074 SNORA1.1-201ENST00000364671 133 ntBASIC0.58□□□□□ -2.32
PTPN4P29074 RNU6-934P-201ENST00000365154 107 ntBASIC0.58□□□□□ -2.32
PTPN4P29074 SNORD58.1-201ENST00000391313 66 ntBASIC0.58□□□□□ -2.32
PTPN4P29074 MIR1302-3-201ENST00000408128 138 ntBASIC0.58□□□□□ -2.32
PTPN4P29074 SNORA79-201ENST00000408376 140 ntBASIC0.58□□□□□ -2.32
PTPN4P29074 RNU6-1190P-201ENST00000410811 104 ntBASIC0.58□□□□□ -2.32
PTPN4P29074 RNU6-602P-201ENST00000411155 105 ntBASIC0.58□□□□□ -2.32
PTPN4P29074 AC023051.1-201ENST00000414098 876 ntTSL 5 BASIC0.58□□□□□ -2.32
PTPN4P29074 AC244098.3-201ENST00000424803 96 ntBASIC0.58□□□□□ -2.32
PTPN4P29074 MTND1P19-201ENST00000511780 315 ntBASIC0.58□□□□□ -2.32
PTPN4P29074 RNY3P16-201ENST00000516338 101 ntBASIC0.58□□□□□ -2.32
PTPN4P29074 AC010177.1-201ENST00000547819 366 ntTSL 3 BASIC0.58□□□□□ -2.32
PTPN4P29074 MIR3129-201ENST00000581095 76 ntBASIC0.58□□□□□ -2.32
PTPN4P29074 MIR4744-201ENST00000581563 82 ntBASIC0.58□□□□□ -2.32
PTPN4P29074 uc_338.6-201ENST00000613544 171 ntBASIC0.58□□□□□ -2.32
PTPN4P29074 MIR6740-201ENST00000618268 113 ntBASIC0.58□□□□□ -2.32
PTPN4P29074 Y_RNA.7-201ENST00000362352 102 ntBASIC0.57□□□□□ -2.32
PTPN4P29074 Y_RNA.308-201ENST00000365043 101 ntBASIC0.57□□□□□ -2.32
PTPN4P29074 RNU4-45P-201ENST00000365469 141 ntBASIC0.57□□□□□ -2.32
PTPN4P29074 Y_RNA.539-201ENST00000384635 107 ntBASIC0.57□□□□□ -2.32
PTPN4P29074 TRAJ2-201ENST00000390535 66 ntAPPRIS P1 BASIC0.57□□□□□ -2.32
PTPN4P29074 RNU1-119P-201ENST00000391122 165 ntBASIC0.57□□□□□ -2.32
PTPN4P29074 RNU6ATAC6P-201ENST00000408132 126 ntBASIC0.57□□□□□ -2.32
PTPN4P29074 AL135790.1-201ENST00000427161 157 ntTSL 3 BASIC0.57□□□□□ -2.32
PTPN4P29074 RNU4-54P-201ENST00000516428 129 ntBASIC0.57□□□□□ -2.32
PTPN4P29074 AC018659.1-201ENST00000551083 169 ntBASIC0.57□□□□□ -2.32
PTPN4P29074 MIR5197-201ENST00000583721 112 ntBASIC0.57□□□□□ -2.32
PTPN4P29074 AL365205.2-201ENST00000594586 68 ntBASIC0.57□□□□□ -2.32
PTPN4P29074 CALCRL-202ENST00000409998 5223 ntAPPRIS P1 TSL 5 BASIC0.57□□□□□ -2.32
PTPN4P29074 Y_RNA.20-201ENST00000362479 113 ntBASIC0.56□□□□□ -2.32
PTPN4P29074 Y_RNA.350-201ENST00000365409 98 ntBASIC0.56□□□□□ -2.32
PTPN4P29074 RNU6-1292P-201ENST00000383856 107 ntBASIC0.56□□□□□ -2.32
PTPN4P29074 Y_RNA.477-201ENST00000384352 108 ntBASIC0.56□□□□□ -2.32
PTPN4P29074 RNU6-578P-201ENST00000390980 103 ntBASIC0.56□□□□□ -2.32
PTPN4P29074 RNU6-493P-201ENST00000391321 108 ntBASIC0.56□□□□□ -2.32
PTPN4P29074 AC015818.7-201ENST00000428754 109 ntBASIC0.56□□□□□ -2.32
PTPN4P29074 AC087499.7-201ENST00000441958 109 ntBASIC0.56□□□□□ -2.32
PTPN4P29074 AL121914.1-201ENST00000450188 156 ntBASIC0.56□□□□□ -2.32
PTPN4P29074 MIR4771-2-201ENST00000577758 74 ntBASIC0.56□□□□□ -2.32
PTPN4P29074 MIR4711-201ENST00000578274 70 ntBASIC0.56□□□□□ -2.32
PTPN4P29074 MIR4771-1-201ENST00000582617 74 ntBASIC0.56□□□□□ -2.32
PTPN4P29074 MIR342-201ENST00000362212 99 ntBASIC0.55□□□□□ -2.32
PTPN4P29074 Y_RNA.65-201ENST00000362846 100 ntBASIC0.55□□□□□ -2.32
PTPN4P29074 SNORD114-23-201ENST00000363536 72 ntBASIC0.55□□□□□ -2.32
PTPN4P29074 RNU6-978P-201ENST00000364371 103 ntBASIC0.55□□□□□ -2.32
PTPN4P29074 MIR588-201ENST00000384900 83 ntBASIC0.55□□□□□ -2.32
PTPN4P29074 AC092628.1-201ENST00000436250 252 ntBASIC0.55□□□□□ -2.32
PTPN4P29074 AL118496.2-201ENST00000448300 230 ntBASIC0.55□□□□□ -2.32
PTPN4P29074 AC011195.1-201ENST00000578177 177 ntBASIC0.55□□□□□ -2.32
PTPN4P29074 AC020891.4-201ENST00000605745 93 ntBASIC0.55□□□□□ -2.32
PTPN4P29074 RNU2-4P-201ENST00000606190 192 ntBASIC0.55□□□□□ -2.32
PTPN4P29074 AC062037.2-201ENST00000610137 73 ntBASIC0.55□□□□□ -2.32
PTPN4P29074 HOXA11-AS1_6.1-201ENST00000620092 179 ntBASIC0.55□□□□□ -2.32
PTPN4P29074 AC010332.2-201ENST00000613083 1904 ntBASIC0.54□□□□□ -2.32
PTPN4P29074 Y_RNA.121-201ENST00000363309 113 ntBASIC0.54□□□□□ -2.32
PTPN4P29074 RNA5SP325-201ENST00000363756 130 ntBASIC0.54□□□□□ -2.32
PTPN4P29074 Y_RNA.351-201ENST00000365436 96 ntBASIC0.54□□□□□ -2.32
PTPN4P29074 Y_RNA.478-201ENST00000384358 107 ntBASIC0.54□□□□□ -2.32
PTPN4P29074 MIR193B-201ENST00000384907 83 ntBASIC0.54□□□□□ -2.32
PTPN4P29074 SNORA26.6-201ENST00000391256 115 ntBASIC0.54□□□□□ -2.32
PTPN4P29074 RNU6-1165P-201ENST00000410119 107 ntBASIC0.54□□□□□ -2.32
PTPN4P29074 RNA5SP193-201ENST00000410353 107 ntBASIC0.54□□□□□ -2.32
PTPN4P29074 Y_RNA.618-201ENST00000410949 107 ntBASIC0.54□□□□□ -2.32
PTPN4P29074 Y_RNA.626-201ENST00000411288 95 ntBASIC0.54□□□□□ -2.32
PTPN4P29074 AL157398.1-201ENST00000452981 186 ntBASIC0.54□□□□□ -2.32
PTPN4P29074 snoU13.2-201ENST00000459201 104 ntBASIC0.54□□□□□ -2.32
PTPN4P29074 RNU7-45P-201ENST00000459460 63 ntBASIC0.54□□□□□ -2.32
PTPN4P29074 RNU6-977P-201ENST00000516411 103 ntBASIC0.54□□□□□ -2.32
PTPN4P29074 Y_RNA.680-201ENST00000516441 93 ntBASIC0.54□□□□□ -2.32
PTPN4P29074 AC007991.2-201ENST00000520185 102 ntTSL 5 BASIC0.54□□□□□ -2.32
PTPN4P29074 AC004148.1-201ENST00000571506 398 ntTSL 5 BASIC0.54□□□□□ -2.32
PTPN4P29074 MIR4308-201ENST00000580634 81 ntBASIC0.54□□□□□ -2.32
PTPN4P29074 MIR4676-201ENST00000583078 72 ntBASIC0.54□□□□□ -2.32
PTPN4P29074 uc_338.17-201ENST00000619633 179 ntBASIC0.54□□□□□ -2.32
PTPN4P29074 AC243829.3-201ENST00000622177 108 ntBASIC0.54□□□□□ -2.32
PTPN4P29074 MIR6717-201ENST00000622747 73 ntBASIC0.54□□□□□ -2.32
PTPN4P29074 MIR302B-201ENST00000362188 73 ntBASIC0.53□□□□□ -2.32
PTPN4P29074 RNU6-923P-201ENST00000364753 107 ntBASIC0.53□□□□□ -2.32
PTPN4P29074 MIR520F-201ENST00000384824 87 ntBASIC0.53□□□□□ -2.32
PTPN4P29074 MIR563-201ENST00000385080 79 ntBASIC0.53□□□□□ -2.32
PTPN4P29074 SNORD12C-201ENST00000386307 89 ntBASIC0.53□□□□□ -2.32
PTPN4P29074 MTND3P2-201ENST00000438452 342 ntBASIC0.53□□□□□ -2.32
PTPN4P29074 MIR18B-201ENST00000454574 71 ntBASIC0.53□□□□□ -2.32
PTPN4P29074 RNU7-80P-201ENST00000459562 61 ntBASIC0.53□□□□□ -2.32
PTPN4P29074 SNORD116-25-201ENST00000516517 92 ntBASIC0.53□□□□□ -2.32
PTPN4P29074 DEFB131B-201ENST00000530210 213 ntAPPRIS P1 TSL 1 (best) BASIC0.53□□□□□ -2.32
PTPN4P29074 MIR378D2-201ENST00000580636 98 ntBASIC0.53□□□□□ -2.32
PTPN4P29074 MIR4804-201ENST00000581683 73 ntBASIC0.53□□□□□ -2.32
PTPN4P29074 MIR3128-201ENST00000581957 66 ntBASIC0.53□□□□□ -2.32
PTPN4P29074 U4.1-201ENST00000620349 87 ntBASIC0.53□□□□□ -2.32
PTPN4P29074 AC091932.4-201ENST00000623386 200 ntBASIC0.53□□□□□ -2.32
PTPN4P29074 AC010487.4-201ENST00000637027 61 ntBASIC0.53□□□□□ -2.32
PTPN4P29074 AL589743.1-201ENST00000551932 2712 ntBASIC0.52□□□□□ -2.33
Retrieved 100 of 98,524 protein–RNA pairs in 176 ms