Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 Y_RNA.590-201ENST00000410140 107 ntBASIC0.35□□□□□ -2.35
COL5A3P25940 AL035398.1-201ENST00000430869 322 ntBASIC0.35□□□□□ -2.35
COL5A3P25940 SNORD2.1-201ENST00000458762 69 ntBASIC0.35□□□□□ -2.35
COL5A3P25940 RNU6-561P-201ENST00000516222 102 ntBASIC0.35□□□□□ -2.35
COL5A3P25940 RNU6-1299P-201ENST00000516316 100 ntBASIC0.35□□□□□ -2.35
COL5A3P25940 SNORA18.4-201ENST00000516440 124 ntBASIC0.35□□□□□ -2.35
COL5A3P25940 MIR4662B-201ENST00000579498 81 ntBASIC0.35□□□□□ -2.35
COL5A3P25940 AC131055.1-201ENST00000584626 316 ntBASIC0.35□□□□□ -2.35
COL5A3P25940 AP001180.6-201ENST00000584918 159 ntBASIC0.35□□□□□ -2.35
COL5A3P25940 MIR1-1-201ENST00000362147 71 ntBASIC0.34□□□□□ -2.36
COL5A3P25940 MIR302B-201ENST00000362188 73 ntBASIC0.34□□□□□ -2.36
COL5A3P25940 Y_RNA.7-201ENST00000362352 102 ntBASIC0.34□□□□□ -2.36
COL5A3P25940 Y_RNA.396-201ENST00000383949 103 ntBASIC0.34□□□□□ -2.36
COL5A3P25940 SNORA1-201ENST00000384107 130 ntBASIC0.34□□□□□ -2.36
COL5A3P25940 Y_RNA.476-201ENST00000384347 108 ntBASIC0.34□□□□□ -2.36
COL5A3P25940 AC090844.1-201ENST00000422019 156 ntBASIC0.34□□□□□ -2.36
COL5A3P25940 AL135790.1-201ENST00000427161 157 ntTSL 3 BASIC0.34□□□□□ -2.36
COL5A3P25940 RNA5SP67-201ENST00000516422 131 ntBASIC0.34□□□□□ -2.36
COL5A3P25940 RNU6-197P-201ENST00000516680 100 ntBASIC0.34□□□□□ -2.36
COL5A3P25940 MIR4264-201ENST00000583520 66 ntBASIC0.34□□□□□ -2.36
COL5A3P25940 Z83818.1-201ENST00000603584 150 ntBASIC0.34□□□□□ -2.36
COL5A3P25940 AP000753.3-201ENST00000604083 169 ntBASIC0.34□□□□□ -2.36
COL5A3P25940 KCNQ1OT1_5.1-201ENST00000621902 226 ntBASIC0.34□□□□□ -2.36
COL5A3P25940 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC0.34□□□□□ -2.36
COL5A3P25940 RNU6-1272P-201ENST00000362776 107 ntBASIC0.33□□□□□ -2.36
COL5A3P25940 Y_RNA.76-201ENST00000362931 109 ntBASIC0.33□□□□□ -2.36
COL5A3P25940 snoU2_19.4-201ENST00000364329 80 ntBASIC0.33□□□□□ -2.36
COL5A3P25940 Y_RNA.262-201ENST00000364641 102 ntBASIC0.33□□□□□ -2.36
COL5A3P25940 Y_RNA.352-201ENST00000365439 102 ntBASIC0.33□□□□□ -2.36
COL5A3P25940 Y_RNA.552-201ENST00000384665 112 ntBASIC0.33□□□□□ -2.36
COL5A3P25940 RNA5SP95-201ENST00000410319 137 ntBASIC0.33□□□□□ -2.36
COL5A3P25940 RNU6-613P-201ENST00000410412 108 ntBASIC0.33□□□□□ -2.36
COL5A3P25940 Y_RNA.610-201ENST00000410681 103 ntBASIC0.33□□□□□ -2.36
COL5A3P25940 Y_RNA.622-201ENST00000411091 108 ntBASIC0.33□□□□□ -2.36
COL5A3P25940 AC244098.3-201ENST00000424803 96 ntBASIC0.33□□□□□ -2.36
COL5A3P25940 RNU7-56P-201ENST00000458744 62 ntBASIC0.33□□□□□ -2.36
COL5A3P25940 SCARNA15.1-201ENST00000516384 125 ntBASIC0.33□□□□□ -2.36
COL5A3P25940 RNU6-977P-201ENST00000516411 103 ntBASIC0.33□□□□□ -2.36
COL5A3P25940 RNU6-1270P-201ENST00000517128 108 ntBASIC0.33□□□□□ -2.36
COL5A3P25940 Y_RNA.720-201ENST00000517166 92 ntBASIC0.33□□□□□ -2.36
COL5A3P25940 AL117187.1-201ENST00000555482 181 ntBASIC0.33□□□□□ -2.36
COL5A3P25940 MIR3152-201ENST00000579801 74 ntBASIC0.33□□□□□ -2.36
COL5A3P25940 AC015726.2-201ENST00000620112 122 ntBASIC0.33□□□□□ -2.36
COL5A3P25940 SNORD115-34-201ENST00000362441 82 ntBASIC0.33□□□□□ -2.36
COL5A3P25940 SNORD115-12-201ENST00000362583 82 ntBASIC0.33□□□□□ -2.36
COL5A3P25940 SNORD115-29-201ENST00000362834 82 ntBASIC0.33□□□□□ -2.36
COL5A3P25940 SNORD115-9-201ENST00000362912 82 ntBASIC0.33□□□□□ -2.36
COL5A3P25940 SNORD115-21-201ENST00000362963 81 ntBASIC0.33□□□□□ -2.36
COL5A3P25940 SNORD115-14-201ENST00000363090 81 ntBASIC0.33□□□□□ -2.36
COL5A3P25940 SNORD115-13-201ENST00000363358 82 ntBASIC0.33□□□□□ -2.36
COL5A3P25940 SNORD115-41-201ENST00000363608 82 ntBASIC0.33□□□□□ -2.36
COL5A3P25940 SNORD115-11-201ENST00000363616 82 ntBASIC0.33□□□□□ -2.36
COL5A3P25940 SNORD115-5-201ENST00000363633 82 ntBASIC0.33□□□□□ -2.36
COL5A3P25940 Y_RNA.162-201ENST00000363683 102 ntBASIC0.33□□□□□ -2.36
COL5A3P25940 SNORD115-39-201ENST00000363694 82 ntBASIC0.33□□□□□ -2.36
COL5A3P25940 SNORD115-4-201ENST00000363810 82 ntBASIC0.33□□□□□ -2.36
COL5A3P25940 SNORD45.3-201ENST00000363836 72 ntBASIC0.33□□□□□ -2.36
COL5A3P25940 SNORD115-16-201ENST00000363887 82 ntBASIC0.33□□□□□ -2.36
COL5A3P25940 SNORD115-6-201ENST00000363942 82 ntBASIC0.33□□□□□ -2.36
COL5A3P25940 SNORD115-42-201ENST00000364273 82 ntBASIC0.33□□□□□ -2.36
COL5A3P25940 SNORD115-15-201ENST00000364809 81 ntBASIC0.33□□□□□ -2.36
COL5A3P25940 SNORD115-1-201ENST00000364961 82 ntBASIC0.33□□□□□ -2.36
COL5A3P25940 Y_RNA.304-201ENST00000365011 112 ntBASIC0.33□□□□□ -2.36
COL5A3P25940 SNORD115-26-201ENST00000365067 82 ntBASIC0.33□□□□□ -2.36
COL5A3P25940 SNORD115-10-201ENST00000365073 81 ntBASIC0.33□□□□□ -2.36
COL5A3P25940 SNORD115-43-201ENST00000365503 82 ntBASIC0.33□□□□□ -2.36
COL5A3P25940 SNORD115-36-201ENST00000365629 82 ntBASIC0.33□□□□□ -2.36
COL5A3P25940 Y_RNA.432-201ENST00000384087 111 ntBASIC0.33□□□□□ -2.36
COL5A3P25940 RNU4-70P-201ENST00000384579 139 ntBASIC0.33□□□□□ -2.36
COL5A3P25940 MIR605-201ENST00000385078 83 ntBASIC0.33□□□□□ -2.36
COL5A3P25940 SNORD105-201ENST00000386910 85 ntBASIC0.33□□□□□ -2.36
COL5A3P25940 TRAJ2-201ENST00000390535 66 ntAPPRIS P1 BASIC0.33□□□□□ -2.36
COL5A3P25940 Y_RNA.618-201ENST00000410949 107 ntBASIC0.33□□□□□ -2.36
COL5A3P25940 RPS3AP1-201ENST00000413190 320 ntBASIC0.33□□□□□ -2.36
COL5A3P25940 LINC01866-201ENST00000421181 201 ntTSL 3 BASIC0.33□□□□□ -2.36
COL5A3P25940 SNORD57-201ENST00000448188 72 ntBASIC0.33□□□□□ -2.36
COL5A3P25940 snoU13.2-201ENST00000459201 104 ntBASIC0.33□□□□□ -2.36
COL5A3P25940 MTATP8P1-201ENST00000467115 207 ntBASIC0.33□□□□□ -2.36
COL5A3P25940 COX6CP6-201ENST00000490840 228 ntBASIC0.33□□□□□ -2.36
COL5A3P25940 RNU6-1045P-201ENST00000516321 107 ntBASIC0.33□□□□□ -2.36
COL5A3P25940 RNU6-1110P-201ENST00000516462 101 ntBASIC0.33□□□□□ -2.36
COL5A3P25940 AC018659.1-201ENST00000551083 169 ntBASIC0.33□□□□□ -2.36
COL5A3P25940 AP000942.4-201ENST00000604811 241 ntBASIC0.33□□□□□ -2.36
COL5A3P25940 SNORD115-40-201ENST00000606510 82 ntBASIC0.33□□□□□ -2.36
COL5A3P25940 AL365265.1-201ENST00000621045 234 ntBASIC0.33□□□□□ -2.36
COL5A3P25940 MT-ATP8-201ENST00000361851 207 ntAPPRIS P1 BASIC0.32□□□□□ -2.36
COL5A3P25940 RNU6-653P-201ENST00000363074 106 ntBASIC0.32□□□□□ -2.36
COL5A3P25940 RNU6-1309P-201ENST00000363305 108 ntBASIC0.32□□□□□ -2.36
COL5A3P25940 RNU6-1335P-201ENST00000365426 107 ntBASIC0.32□□□□□ -2.36
COL5A3P25940 RNU6-1189P-201ENST00000383958 107 ntBASIC0.32□□□□□ -2.36
COL5A3P25940 RNU6-514P-201ENST00000384208 107 ntBASIC0.32□□□□□ -2.36
COL5A3P25940 RNU6-364P-201ENST00000384387 107 ntBASIC0.32□□□□□ -2.36
COL5A3P25940 Y_RNA.574-201ENST00000384766 95 ntBASIC0.32□□□□□ -2.36
COL5A3P25940 RNU6-1319P-201ENST00000390855 104 ntBASIC0.32□□□□□ -2.36
COL5A3P25940 RNU6-205P-201ENST00000390858 107 ntBASIC0.32□□□□□ -2.36
COL5A3P25940 RNU6-747P-201ENST00000390928 104 ntBASIC0.32□□□□□ -2.36
COL5A3P25940 RNU6-241P-201ENST00000391148 104 ntBASIC0.32□□□□□ -2.36
COL5A3P25940 RNU6-177P-201ENST00000411257 104 ntBASIC0.32□□□□□ -2.36
COL5A3P25940 RPS26P5-201ENST00000418544 335 ntBASIC0.32□□□□□ -2.36
COL5A3P25940 Y_RNA.23-201ENST00000362496 106 ntBASIC0.31□□□□□ -2.36
Retrieved 100 of 98,524 protein–RNA pairs in 102.5 ms