Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 RNU6-738P-201ENST00000384531 106 ntBASIC0.43□□□□□ -2.34
SDC1P18827 MIR125B2-201ENST00000385128 89 ntBASIC0.43□□□□□ -2.34
SDC1P18827 TRAJ2-201ENST00000390535 66 ntAPPRIS P1 BASIC0.43□□□□□ -2.34
SDC1P18827 RNU4-43P-201ENST00000410628 137 ntBASIC0.43□□□□□ -2.34
SDC1P18827 AC137770.1-201ENST00000504620 530 ntTSL 3 BASIC0.43□□□□□ -2.34
SDC1P18827 MIR302B-201ENST00000362188 73 ntBASIC0.42□□□□□ -2.34
SDC1P18827 SNORD18A-201ENST00000363753 72 ntBASIC0.42□□□□□ -2.34
SDC1P18827 Y_RNA.292-201ENST00000364904 97 ntBASIC0.42□□□□□ -2.34
SDC1P18827 RNU6-42P-201ENST00000384165 107 ntBASIC0.42□□□□□ -2.34
SDC1P18827 SNORA79-201ENST00000408376 140 ntBASIC0.42□□□□□ -2.34
SDC1P18827 MIR1257-201ENST00000408490 117 ntBASIC0.42□□□□□ -2.34
SDC1P18827 AL136320.1-201ENST00000417273 430 ntTSL 3 BASIC0.42□□□□□ -2.34
SDC1P18827 AC092628.1-201ENST00000436250 252 ntBASIC0.42□□□□□ -2.34
SDC1P18827 RNU6-229P-201ENST00000516614 102 ntBASIC0.42□□□□□ -2.34
SDC1P18827 AL365205.2-201ENST00000594586 68 ntBASIC0.42□□□□□ -2.34
SDC1P18827 AC091932.4-201ENST00000623386 200 ntBASIC0.42□□□□□ -2.34
SDC1P18827 OMD-201ENST00000375550 2449 ntAPPRIS P1 TSL 1 (best) BASIC0.41□□□□□ -2.34
SDC1P18827 RNU6-103P-201ENST00000363686 107 ntBASIC0.41□□□□□ -2.34
SDC1P18827 RNU6-597P-201ENST00000365620 102 ntBASIC0.41□□□□□ -2.34
SDC1P18827 RNU6-1292P-201ENST00000383856 107 ntBASIC0.41□□□□□ -2.34
SDC1P18827 MT-TF-201ENST00000387314 71 ntBASIC0.41□□□□□ -2.34
SDC1P18827 AL358176.2-201ENST00000425769 204 ntBASIC0.41□□□□□ -2.34
SDC1P18827 SNORD127-201ENST00000458892 86 ntBASIC0.41□□□□□ -2.34
SDC1P18827 RNU7-102P-201ENST00000458948 62 ntBASIC0.41□□□□□ -2.34
SDC1P18827 RNY3P16-201ENST00000516338 101 ntBASIC0.41□□□□□ -2.34
SDC1P18827 HOXA11-AS1_6.1-201ENST00000620092 179 ntBASIC0.41□□□□□ -2.34
SDC1P18827 Y_RNA.149-201ENST00000363558 117 ntBASIC0.4□□□□□ -2.35
SDC1P18827 RNU4-45P-201ENST00000365469 141 ntBASIC0.4□□□□□ -2.35
SDC1P18827 Y_RNA.459-201ENST00000384251 102 ntBASIC0.4□□□□□ -2.35
SDC1P18827 RNU6-364P-201ENST00000384387 107 ntBASIC0.4□□□□□ -2.35
SDC1P18827 Y_RNA.618-201ENST00000410949 107 ntBASIC0.4□□□□□ -2.35
SDC1P18827 AC114737.2-201ENST00000421583 173 ntBASIC0.4□□□□□ -2.35
SDC1P18827 AC098934.3-201ENST00000430450 190 ntBASIC0.4□□□□□ -2.35
SDC1P18827 AL121914.1-201ENST00000450188 156 ntBASIC0.4□□□□□ -2.35
SDC1P18827 RNU7-80P-201ENST00000459562 61 ntBASIC0.4□□□□□ -2.35
SDC1P18827 RN7SKP12-201ENST00000516275 143 ntBASIC0.4□□□□□ -2.35
SDC1P18827 RNU7-156P-201ENST00000517214 74 ntBASIC0.4□□□□□ -2.35
SDC1P18827 AC090897.1-201ENST00000580909 226 ntBASIC0.4□□□□□ -2.35
SDC1P18827 MIR4744-201ENST00000581563 82 ntBASIC0.4□□□□□ -2.35
SDC1P18827 SNORD92-201ENST00000585078 85 ntBASIC0.4□□□□□ -2.35
SDC1P18827 AL162730.1-201ENST00000605734 292 ntBASIC0.4□□□□□ -2.35
SDC1P18827 MIR5087-201ENST00000635826 76 ntBASIC0.4□□□□□ -2.35
SDC1P18827 AL596211.1-201ENST00000569873 2277 ntBASIC0.39□□□□□ -2.35
SDC1P18827 Y_RNA.116-201ENST00000363292 103 ntBASIC0.39□□□□□ -2.35
SDC1P18827 RNU6-978P-201ENST00000364371 103 ntBASIC0.39□□□□□ -2.35
SDC1P18827 Y_RNA.288-201ENST00000364854 92 ntBASIC0.39□□□□□ -2.35
SDC1P18827 Y_RNA.308-201ENST00000365043 101 ntBASIC0.39□□□□□ -2.35
SDC1P18827 Y_RNA.354-201ENST00000365448 111 ntBASIC0.39□□□□□ -2.35
SDC1P18827 Y_RNA.562-201ENST00000384695 113 ntBASIC0.39□□□□□ -2.35
SDC1P18827 RNU6-1319P-201ENST00000390855 104 ntBASIC0.39□□□□□ -2.35
SDC1P18827 RNU6-747P-201ENST00000390928 104 ntBASIC0.39□□□□□ -2.35
SDC1P18827 RNU6-241P-201ENST00000391148 104 ntBASIC0.39□□□□□ -2.35
SDC1P18827 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC0.39□□□□□ -2.35
SDC1P18827 SNORD100-201ENST00000408573 76 ntBASIC0.39□□□□□ -2.35
SDC1P18827 MIR548H3-201ENST00000408771 118 ntBASIC0.39□□□□□ -2.35
SDC1P18827 RNU6-447P-201ENST00000410293 104 ntBASIC0.39□□□□□ -2.35
SDC1P18827 RNU6-1118P-201ENST00000410382 104 ntBASIC0.39□□□□□ -2.35
SDC1P18827 RNU6-1076P-201ENST00000410397 104 ntBASIC0.39□□□□□ -2.35
SDC1P18827 RNU6-355P-201ENST00000410427 104 ntBASIC0.39□□□□□ -2.35
SDC1P18827 RNU6-791P-201ENST00000410467 104 ntBASIC0.39□□□□□ -2.35
SDC1P18827 RNU6-705P-201ENST00000410601 104 ntBASIC0.39□□□□□ -2.35
SDC1P18827 RNU6-1100P-201ENST00000410691 104 ntBASIC0.39□□□□□ -2.35
SDC1P18827 RNU6-860P-201ENST00000410860 104 ntBASIC0.39□□□□□ -2.35
SDC1P18827 RNU6-1217P-201ENST00000411276 104 ntBASIC0.39□□□□□ -2.35
SDC1P18827 RNU6-785P-201ENST00000411324 104 ntBASIC0.39□□□□□ -2.35
SDC1P18827 SEPT7P4-201ENST00000437076 306 ntBASIC0.39□□□□□ -2.35
SDC1P18827 SNORA68.3-201ENST00000515906 83 ntBASIC0.39□□□□□ -2.35
SDC1P18827 Z83818.1-201ENST00000603584 150 ntBASIC0.39□□□□□ -2.35
SDC1P18827 U6.90-201ENST00000614007 104 ntBASIC0.39□□□□□ -2.35
SDC1P18827 U6.70-201ENST00000620287 104 ntBASIC0.39□□□□□ -2.35
SDC1P18827 Y_RNA.454-201ENST00000384224 113 ntBASIC0.38□□□□□ -2.35
SDC1P18827 RNU6-578P-201ENST00000390980 103 ntBASIC0.38□□□□□ -2.35
SDC1P18827 RNU6-493P-201ENST00000391321 108 ntBASIC0.38□□□□□ -2.35
SDC1P18827 RNA5SP261-201ENST00000410536 106 ntBASIC0.38□□□□□ -2.35
SDC1P18827 AC023051.1-201ENST00000414098 876 ntTSL 5 BASIC0.38□□□□□ -2.35
SDC1P18827 LINC00345-201ENST00000443679 285 ntTSL 5 BASIC0.38□□□□□ -2.35
SDC1P18827 AL360085.1-201ENST00000604713 532 ntBASIC0.38□□□□□ -2.35
SDC1P18827 RNU6-694P-201ENST00000364071 147 ntBASIC0.37□□□□□ -2.35
SDC1P18827 RNY4P28-201ENST00000365281 93 ntBASIC0.37□□□□□ -2.35
SDC1P18827 Y_RNA.430-201ENST00000384081 110 ntBASIC0.37□□□□□ -2.35
SDC1P18827 RNU6-1011P-201ENST00000384668 107 ntBASIC0.37□□□□□ -2.35
SDC1P18827 AC002350.1-201ENST00000490759 375 ntBASIC0.37□□□□□ -2.35
SDC1P18827 SNORD116-25-201ENST00000516517 92 ntBASIC0.37□□□□□ -2.35
SDC1P18827 IGHVIII-67-2-201ENST00000519849 88 ntBASIC0.37□□□□□ -2.35
SDC1P18827 SNORA4-201ENST00000584302 138 ntBASIC0.37□□□□□ -2.35
SDC1P18827 RNU2-4P-201ENST00000606190 192 ntBASIC0.37□□□□□ -2.35
SDC1P18827 AL662814.1-201ENST00000617364 121 ntBASIC0.37□□□□□ -2.35
SDC1P18827 MIR6841-201ENST00000637129 72 ntBASIC0.37□□□□□ -2.35
SDC1P18827 C9orf84-203ENST00000374287 4721 ntAPPRIS P3 TSL 5 BASIC0.37□□□□□ -2.35
SDC1P18827 CALCRL-202ENST00000409998 5223 ntAPPRIS P1 TSL 5 BASIC0.36□□□□□ -2.35
SDC1P18827 SNORD27-201ENST00000363981 72 ntBASIC0.36□□□□□ -2.35
SDC1P18827 Y_RNA.269-201ENST00000364685 89 ntBASIC0.36□□□□□ -2.35
SDC1P18827 MIR568-201ENST00000385036 95 ntBASIC0.36□□□□□ -2.35
SDC1P18827 MIR518E-201ENST00000385252 88 ntBASIC0.36□□□□□ -2.35
SDC1P18827 ATP6V0E1P1-201ENST00000412537 226 ntBASIC0.36□□□□□ -2.35
SDC1P18827 MTND2P23-201ENST00000422990 651 ntBASIC0.36□□□□□ -2.35
SDC1P18827 AL162399.1-201ENST00000426090 130 ntTSL 3 BASIC0.36□□□□□ -2.35
SDC1P18827 RNU6-1132P-201ENST00000459214 107 ntBASIC0.36□□□□□ -2.35
SDC1P18827 MTND1P19-201ENST00000511780 315 ntBASIC0.36□□□□□ -2.35
SDC1P18827 MIR378D2-201ENST00000580636 98 ntBASIC0.36□□□□□ -2.35
Retrieved 100 of 98,524 protein–RNA pairs in 116 ms