Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 uc_338.16-201ENST00000621804 95 ntBASIC0.53□□□□□ -2.32
HMGB1P09429 MIR376A2-201ENST00000636782 80 ntBASIC0.53□□□□□ -2.32
HMGB1P09429 Y_RNA.454-201ENST00000384224 113 ntBASIC0.52□□□□□ -2.33
HMGB1P09429 SNORA26.6-201ENST00000391256 115 ntBASIC0.52□□□□□ -2.33
HMGB1P09429 SEPT7P4-201ENST00000437076 306 ntBASIC0.52□□□□□ -2.33
HMGB1P09429 MIR335-201ENST00000362173 94 ntBASIC0.51□□□□□ -2.33
HMGB1P09429 Y_RNA.461-201ENST00000384263 103 ntBASIC0.51□□□□□ -2.33
HMGB1P09429 Y_RNA.542-201ENST00000384641 111 ntBASIC0.51□□□□□ -2.33
HMGB1P09429 RNU4-83P-201ENST00000410863 133 ntBASIC0.51□□□□□ -2.33
HMGB1P09429 Y_RNA.618-201ENST00000410949 107 ntBASIC0.51□□□□□ -2.33
HMGB1P09429 RNA5SP134-201ENST00000516492 96 ntBASIC0.51□□□□□ -2.33
HMGB1P09429 RNA5SP94-201ENST00000516917 108 ntBASIC0.51□□□□□ -2.33
HMGB1P09429 RNU7-70P-201ENST00000516941 66 ntBASIC0.51□□□□□ -2.33
HMGB1P09429 MIR3152-201ENST00000579801 74 ntBASIC0.51□□□□□ -2.33
HMGB1P09429 AC091932.4-201ENST00000623386 200 ntBASIC0.51□□□□□ -2.33
HMGB1P09429 RNU6-653P-201ENST00000363074 106 ntBASIC0.5□□□□□ -2.33
HMGB1P09429 Y_RNA.122-201ENST00000363331 96 ntBASIC0.5□□□□□ -2.33
HMGB1P09429 Y_RNA.176-201ENST00000363815 109 ntBASIC0.5□□□□□ -2.33
HMGB1P09429 RNU4-17P-201ENST00000365598 141 ntBASIC0.5□□□□□ -2.33
HMGB1P09429 RNU6-1227P-201ENST00000383981 107 ntBASIC0.5□□□□□ -2.33
HMGB1P09429 Y_RNA.483-201ENST00000384380 101 ntBASIC0.5□□□□□ -2.33
HMGB1P09429 SNORA20-201ENST00000384662 132 ntBASIC0.5□□□□□ -2.33
HMGB1P09429 RNU6-381P-201ENST00000391259 108 ntBASIC0.5□□□□□ -2.33
HMGB1P09429 SNORA40.8-201ENST00000411034 126 ntBASIC0.5□□□□□ -2.33
HMGB1P09429 AL135790.1-201ENST00000427161 157 ntTSL 3 BASIC0.5□□□□□ -2.33
HMGB1P09429 MIR5197-201ENST00000583721 112 ntBASIC0.5□□□□□ -2.33
HMGB1P09429 SNORA4-201ENST00000584302 138 ntBASIC0.5□□□□□ -2.33
HMGB1P09429 Y_RNA.224-201ENST00000364308 111 ntBASIC0.49□□□□□ -2.33
HMGB1P09429 MIR518A1-201ENST00000385068 85 ntBASIC0.49□□□□□ -2.33
HMGB1P09429 AL122017.1-202ENST00000570612 319 ntTSL 5 BASIC0.49□□□□□ -2.33
HMGB1P09429 MIR3678-201ENST00000578455 94 ntBASIC0.49□□□□□ -2.33
HMGB1P09429 Y_RNA.54-201ENST00000362766 105 ntBASIC0.48□□□□□ -2.33
HMGB1P09429 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC0.48□□□□□ -2.33
HMGB1P09429 RNU6ATAC42P-201ENST00000408637 95 ntBASIC0.48□□□□□ -2.33
HMGB1P09429 AC098934.3-201ENST00000430450 190 ntBASIC0.48□□□□□ -2.33
HMGB1P09429 Y_RNA.676-201ENST00000516393 96 ntBASIC0.48□□□□□ -2.33
HMGB1P09429 RNU6-229P-201ENST00000516614 102 ntBASIC0.48□□□□□ -2.33
HMGB1P09429 SNORA25.18-201ENST00000607153 114 ntBASIC0.48□□□□□ -2.33
HMGB1P09429 MIR6513-201ENST00000621188 64 ntBASIC0.48□□□□□ -2.33
HMGB1P09429 MIR8062-201ENST00000621515 85 ntBASIC0.48□□□□□ -2.33
HMGB1P09429 CALCRL-202ENST00000409998 5223 ntAPPRIS P1 TSL 5 BASIC0.48□□□□□ -2.33
HMGB1P09429 AC090625.1-201ENST00000357130 210 ntBASIC0.47□□□□□ -2.33
HMGB1P09429 RNU6-597P-201ENST00000365620 102 ntBASIC0.47□□□□□ -2.33
HMGB1P09429 Y_RNA.422-201ENST00000384054 114 ntBASIC0.47□□□□□ -2.33
HMGB1P09429 MIR216A-201ENST00000385063 110 ntBASIC0.47□□□□□ -2.33
HMGB1P09429 MT-TW-201ENST00000387382 68 ntBASIC0.47□□□□□ -2.33
HMGB1P09429 AC022523.2-201ENST00000561045 150 ntBASIC0.47□□□□□ -2.33
HMGB1P09429 AL662814.1-201ENST00000617364 121 ntBASIC0.47□□□□□ -2.33
HMGB1P09429 MIR103A1-201ENST00000362165 78 ntBASIC0.46□□□□□ -2.34
HMGB1P09429 RNU6-403P-201ENST00000363163 104 ntBASIC0.46□□□□□ -2.34
HMGB1P09429 Y_RNA.262-201ENST00000364641 102 ntBASIC0.46□□□□□ -2.34
HMGB1P09429 RNU1-133P-201ENST00000364867 167 ntBASIC0.46□□□□□ -2.34
HMGB1P09429 Y_RNA.567-201ENST00000384736 106 ntBASIC0.46□□□□□ -2.34
HMGB1P09429 AL121914.1-201ENST00000450188 156 ntBASIC0.46□□□□□ -2.34
HMGB1P09429 MIR4282-201ENST00000583613 67 ntBASIC0.46□□□□□ -2.34
HMGB1P09429 RNA5SP247-201ENST00000411181 105 ntBASIC0.45□□□□□ -2.34
HMGB1P09429 RNU6-469P-201ENST00000516253 101 ntBASIC0.45□□□□□ -2.34
HMGB1P09429 Y_RNA.720-201ENST00000517166 92 ntBASIC0.45□□□□□ -2.34
HMGB1P09429 AC133485.4-201ENST00000561835 220 ntBASIC0.44□□□□□ -2.34
HMGB1P09429 ANGPTL3-201ENST00000371129 2805 ntAPPRIS P1 TSL 1 (best) BASIC0.43□□□□□ -2.34
HMGB1P09429 RNU6-1292P-201ENST00000383856 107 ntBASIC0.43□□□□□ -2.34
HMGB1P09429 Y_RNA.617-201ENST00000410920 90 ntBASIC0.43□□□□□ -2.34
HMGB1P09429 AL078603.1-201ENST00000603824 313 ntBASIC0.43□□□□□ -2.34
HMGB1P09429 NEAT1_2.1-201ENST00000620525 105 ntBASIC0.43□□□□□ -2.34
HMGB1P09429 MIR5087-201ENST00000635826 76 ntBASIC0.43□□□□□ -2.34
HMGB1P09429 RNU6-103P-201ENST00000363686 107 ntBASIC0.42□□□□□ -2.34
HMGB1P09429 SNRPGP12-201ENST00000449481 213 ntBASIC0.42□□□□□ -2.34
HMGB1P09429 RNA5SP220-201ENST00000516298 104 ntBASIC0.42□□□□□ -2.34
HMGB1P09429 IGHVIII-67-2-201ENST00000519849 88 ntBASIC0.42□□□□□ -2.34
HMGB1P09429 AP003072.1-201ENST00000531740 145 ntBASIC0.42□□□□□ -2.34
HMGB1P09429 AC006504.6-201ENST00000590142 199 ntBASIC0.42□□□□□ -2.34
HMGB1P09429 AC243829.3-201ENST00000622177 108 ntBASIC0.42□□□□□ -2.34
HMGB1P09429 Y_RNA.11-201ENST00000362375 109 ntBASIC0.41□□□□□ -2.34
HMGB1P09429 SNORD44.1-201ENST00000363202 61 ntBASIC0.41□□□□□ -2.34
HMGB1P09429 Y_RNA.226-201ENST00000364337 114 ntBASIC0.41□□□□□ -2.34
HMGB1P09429 Y_RNA.277-201ENST00000364754 102 ntBASIC0.41□□□□□ -2.34
HMGB1P09429 MIR8066-201ENST00000617280 78 ntBASIC0.41□□□□□ -2.34
HMGB1P09429 RNU6-1327P-201ENST00000365302 105 ntBASIC0.4□□□□□ -2.35
HMGB1P09429 Y_RNA.430-201ENST00000384081 110 ntBASIC0.4□□□□□ -2.35
HMGB1P09429 SNORA8.2-201ENST00000384372 139 ntBASIC0.4□□□□□ -2.35
HMGB1P09429 Y_RNA.574-201ENST00000384766 95 ntBASIC0.4□□□□□ -2.35
HMGB1P09429 MIR4711-201ENST00000578274 70 ntBASIC0.4□□□□□ -2.35
HMGB1P09429 AL365205.2-201ENST00000594586 68 ntBASIC0.4□□□□□ -2.35
HMGB1P09429 AC243829.6-201ENST00000612652 106 ntBASIC0.4□□□□□ -2.35
HMGB1P09429 Y_RNA.13-201ENST00000362403 112 ntBASIC0.39□□□□□ -2.35
HMGB1P09429 SNORA72.6-201ENST00000384520 129 ntBASIC0.39□□□□□ -2.35
HMGB1P09429 MIR1287-201ENST00000408492 90 ntBASIC0.39□□□□□ -2.35
HMGB1P09429 SNORD116-25-201ENST00000516517 92 ntBASIC0.39□□□□□ -2.35
HMGB1P09429 AL442067.1-201ENST00000613261 223 ntBASIC0.39□□□□□ -2.35
HMGB1P09429 VPS35-212ENST00000640313 141 ntTSL 5 BASIC0.39□□□□□ -2.35
HMGB1P09429 C9orf84-203ENST00000374287 4721 ntAPPRIS P3 TSL 5 BASIC0.38□□□□□ -2.35
HMGB1P09429 Y_RNA.42-201ENST00000362660 108 ntBASIC0.38□□□□□ -2.35
HMGB1P09429 SNORA22.1-201ENST00000362701 134 ntBASIC0.38□□□□□ -2.35
HMGB1P09429 RNA5SP62-201ENST00000363457 110 ntBASIC0.38□□□□□ -2.35
HMGB1P09429 Y_RNA.238-201ENST00000364441 102 ntBASIC0.38□□□□□ -2.35
HMGB1P09429 Y_RNA.352-201ENST00000365439 102 ntBASIC0.38□□□□□ -2.35
HMGB1P09429 MIR644A-201ENST00000385262 94 ntBASIC0.38□□□□□ -2.35
HMGB1P09429 U8.15-201ENST00000390947 134 ntBASIC0.38□□□□□ -2.35
HMGB1P09429 MIR936-201ENST00000401264 98 ntBASIC0.38□□□□□ -2.35
HMGB1P09429 AC141846.1-201ENST00000568348 142 ntBASIC0.38□□□□□ -2.35
Retrieved 100 of 98,524 protein–RNA pairs in 213 ms