Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 MIR3129-201ENST00000581095 76 ntBASIC0.42□□□□□ -2.34
MSH4O15457 AC020891.4-201ENST00000605745 93 ntBASIC0.42□□□□□ -2.34
MSH4O15457 MIR6740-201ENST00000618268 113 ntBASIC0.42□□□□□ -2.34
MSH4O15457 SNORD38B-202ENST00000625943 69 ntBASIC0.42□□□□□ -2.34
MSH4O15457 AC010332.2-201ENST00000613083 1904 ntBASIC0.42□□□□□ -2.34
MSH4O15457 RNU6-653P-201ENST00000363074 106 ntBASIC0.41□□□□□ -2.34
MSH4O15457 VTRNA1-3-201ENST00000365645 89 ntBASIC0.41□□□□□ -2.34
MSH4O15457 RNU6-1189P-201ENST00000383958 107 ntBASIC0.41□□□□□ -2.34
MSH4O15457 MIR140-201ENST00000385282 100 ntBASIC0.41□□□□□ -2.34
MSH4O15457 MIR616-201ENST00000385293 97 ntBASIC0.41□□□□□ -2.34
MSH4O15457 SNORD12C-201ENST00000386307 89 ntBASIC0.41□□□□□ -2.34
MSH4O15457 SNORD77.3-201ENST00000391113 65 ntBASIC0.41□□□□□ -2.34
MSH4O15457 RNU6-602P-201ENST00000411155 105 ntBASIC0.41□□□□□ -2.34
MSH4O15457 AL136320.1-201ENST00000417273 430 ntTSL 3 BASIC0.41□□□□□ -2.34
MSH4O15457 RNU7-73P-201ENST00000458743 63 ntBASIC0.41□□□□□ -2.34
MSH4O15457 AL117187.1-201ENST00000555482 181 ntBASIC0.41□□□□□ -2.34
MSH4O15457 MIR4282-201ENST00000583613 67 ntBASIC0.41□□□□□ -2.34
MSH4O15457 Y_RNA.145-201ENST00000363527 102 ntBASIC0.4□□□□□ -2.35
MSH4O15457 SNORA1.1-201ENST00000364671 133 ntBASIC0.4□□□□□ -2.35
MSH4O15457 Y_RNA.292-201ENST00000364904 97 ntBASIC0.4□□□□□ -2.35
MSH4O15457 Y_RNA.440-201ENST00000384120 114 ntBASIC0.4□□□□□ -2.35
MSH4O15457 RNU6-738P-201ENST00000384531 106 ntBASIC0.4□□□□□ -2.35
MSH4O15457 MIR588-201ENST00000384900 83 ntBASIC0.4□□□□□ -2.35
MSH4O15457 RNU6-381P-201ENST00000391259 108 ntBASIC0.4□□□□□ -2.35
MSH4O15457 RNU2-55P-201ENST00000411146 174 ntBASIC0.4□□□□□ -2.35
MSH4O15457 RNU7-53P-201ENST00000516705 60 ntBASIC0.4□□□□□ -2.35
MSH4O15457 AC007991.2-201ENST00000520185 102 ntTSL 5 BASIC0.4□□□□□ -2.35
MSH4O15457 MIR4676-201ENST00000583078 72 ntBASIC0.4□□□□□ -2.35
MSH4O15457 AL360085.1-201ENST00000604713 532 ntBASIC0.4□□□□□ -2.35
MSH4O15457 Z97988.1-201ENST00000637697 135 ntBASIC0.4□□□□□ -2.35
MSH4O15457 U6.104-201ENST00000637979 90 ntBASIC0.4□□□□□ -2.35
MSH4O15457 Y_RNA.65-201ENST00000362846 100 ntBASIC0.39□□□□□ -2.35
MSH4O15457 SNORD27-201ENST00000363981 72 ntBASIC0.39□□□□□ -2.35
MSH4O15457 Y_RNA.308-201ENST00000365043 101 ntBASIC0.39□□□□□ -2.35
MSH4O15457 Y_RNA.351-201ENST00000365436 96 ntBASIC0.39□□□□□ -2.35
MSH4O15457 RPS27-201ENST00000368567 350 ntAPPRIS P1 TSL 1 (best) BASIC0.39□□□□□ -2.35
MSH4O15457 Y_RNA.477-201ENST00000384352 108 ntBASIC0.39□□□□□ -2.35
MSH4O15457 RNU6-1011P-201ENST00000384668 107 ntBASIC0.39□□□□□ -2.35
MSH4O15457 SNORA26-201ENST00000391286 122 ntBASIC0.39□□□□□ -2.35
MSH4O15457 RNU6-493P-201ENST00000391321 108 ntBASIC0.39□□□□□ -2.35
MSH4O15457 MIR548I3-201ENST00000408378 149 ntBASIC0.39□□□□□ -2.35
MSH4O15457 SNORD127-201ENST00000458892 86 ntBASIC0.39□□□□□ -2.35
MSH4O15457 RNU6-998P-201ENST00000515894 101 ntBASIC0.39□□□□□ -2.35
MSH4O15457 MIR4804-201ENST00000581683 73 ntBASIC0.39□□□□□ -2.35
MSH4O15457 MIR302B-201ENST00000362188 73 ntBASIC0.38□□□□□ -2.35
MSH4O15457 Y_RNA.262-201ENST00000364641 102 ntBASIC0.38□□□□□ -2.35
MSH4O15457 RNU6-923P-201ENST00000364753 107 ntBASIC0.38□□□□□ -2.35
MSH4O15457 RNU4-17P-201ENST00000365598 141 ntBASIC0.38□□□□□ -2.35
MSH4O15457 RNU6-597P-201ENST00000365620 102 ntBASIC0.38□□□□□ -2.35
MSH4O15457 RNY3P5-201ENST00000384127 102 ntBASIC0.38□□□□□ -2.35
MSH4O15457 Y_RNA.518-201ENST00000384552 113 ntBASIC0.38□□□□□ -2.35
MSH4O15457 MIR568-201ENST00000385036 95 ntBASIC0.38□□□□□ -2.35
MSH4O15457 SEPT7P4-201ENST00000437076 306 ntBASIC0.38□□□□□ -2.35
MSH4O15457 AL121914.1-201ENST00000450188 156 ntBASIC0.38□□□□□ -2.35
MSH4O15457 RNU7-96P-201ENST00000459535 64 ntBASIC0.38□□□□□ -2.35
MSH4O15457 RNA5SP153-201ENST00000516498 76 ntBASIC0.38□□□□□ -2.35
MSH4O15457 RNU6-126P-201ENST00000516685 103 ntBASIC0.38□□□□□ -2.35
MSH4O15457 AC010177.1-201ENST00000547819 366 ntTSL 3 BASIC0.38□□□□□ -2.35
MSH4O15457 AC011921.3-201ENST00000605540 361 ntBASIC0.38□□□□□ -2.35
MSH4O15457 AL442067.1-201ENST00000613261 223 ntBASIC0.38□□□□□ -2.35
MSH4O15457 MIR18A-201ENST00000362310 71 ntBASIC0.37□□□□□ -2.35
MSH4O15457 RNU6-728P-201ENST00000365375 104 ntBASIC0.37□□□□□ -2.35
MSH4O15457 Y_RNA.352-201ENST00000365439 102 ntBASIC0.37□□□□□ -2.35
MSH4O15457 Y_RNA.410-201ENST00000383992 113 ntBASIC0.37□□□□□ -2.35
MSH4O15457 RNU6-1165P-201ENST00000410119 107 ntBASIC0.37□□□□□ -2.35
MSH4O15457 AL358176.2-201ENST00000425769 204 ntBASIC0.37□□□□□ -2.35
MSH4O15457 AC012668.1-201ENST00000457625 228 ntTSL 3 BASIC0.37□□□□□ -2.35
MSH4O15457 RNU7-56P-201ENST00000458744 62 ntBASIC0.37□□□□□ -2.35
MSH4O15457 MIR3612-201ENST00000579753 87 ntBASIC0.37□□□□□ -2.35
MSH4O15457 AC097639.2-201ENST00000603159 172 ntBASIC0.37□□□□□ -2.35
MSH4O15457 AC008608.1-201ENST00000603910 127 ntBASIC0.37□□□□□ -2.35
MSH4O15457 RNU2-4P-201ENST00000606190 192 ntBASIC0.37□□□□□ -2.35
MSH4O15457 AL596211.1-201ENST00000569873 2277 ntBASIC0.37□□□□□ -2.35
MSH4O15457 Y_RNA.149-201ENST00000363558 117 ntBASIC0.36□□□□□ -2.35
MSH4O15457 RNU4-45P-201ENST00000365469 141 ntBASIC0.36□□□□□ -2.35
MSH4O15457 SNORA79-201ENST00000408376 140 ntBASIC0.36□□□□□ -2.35
MSH4O15457 MTND2P23-201ENST00000422990 651 ntBASIC0.36□□□□□ -2.35
MSH4O15457 AL135790.1-201ENST00000427161 157 ntTSL 3 BASIC0.36□□□□□ -2.35
MSH4O15457 snoU13.2-201ENST00000459201 104 ntBASIC0.36□□□□□ -2.35
MSH4O15457 AC137770.1-201ENST00000504620 530 ntTSL 3 BASIC0.36□□□□□ -2.35
MSH4O15457 RNU6-327P-201ENST00000516270 127 ntBASIC0.36□□□□□ -2.35
MSH4O15457 AL162730.1-201ENST00000605734 292 ntBASIC0.36□□□□□ -2.35
MSH4O15457 5S_rRNA.15-201ENST00000611169 127 ntBASIC0.36□□□□□ -2.35
MSH4O15457 MIR6717-201ENST00000622747 73 ntBASIC0.36□□□□□ -2.35
MSH4O15457 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.36□□□□□ -2.35
MSH4O15457 Y_RNA.258-201ENST00000364613 105 ntBASIC0.35□□□□□ -2.35
MSH4O15457 Y_RNA.288-201ENST00000364854 92 ntBASIC0.35□□□□□ -2.35
MSH4O15457 RNU6-364P-201ENST00000384387 107 ntBASIC0.35□□□□□ -2.35
MSH4O15457 TRAJ2-201ENST00000390535 66 ntAPPRIS P1 BASIC0.35□□□□□ -2.35
MSH4O15457 SNORA26.6-201ENST00000391256 115 ntBASIC0.35□□□□□ -2.35
MSH4O15457 ATP6V0E1P1-201ENST00000412537 226 ntBASIC0.35□□□□□ -2.35
MSH4O15457 AC023051.1-201ENST00000414098 876 ntTSL 5 BASIC0.35□□□□□ -2.35
MSH4O15457 LINC00345-201ENST00000443679 285 ntTSL 5 BASIC0.35□□□□□ -2.35
MSH4O15457 RNU7-185P-201ENST00000459215 60 ntBASIC0.35□□□□□ -2.35
MSH4O15457 AC103879.1-201ENST00000503093 255 ntTSL 2 BASIC0.35□□□□□ -2.35
MSH4O15457 MTND1P19-201ENST00000511780 315 ntBASIC0.35□□□□□ -2.35
MSH4O15457 SNORA68.3-201ENST00000515906 83 ntBASIC0.35□□□□□ -2.35
MSH4O15457 AC004148.1-201ENST00000571506 398 ntTSL 5 BASIC0.35□□□□□ -2.35
MSH4O15457 MIR4744-201ENST00000581563 82 ntBASIC0.35□□□□□ -2.35
MSH4O15457 AC091932.4-201ENST00000623386 200 ntBASIC0.35□□□□□ -2.35
Retrieved 100 of 98,524 protein–RNA pairs in 180.5 ms