Protein–RNA interactions for Protein: O00151

PDLIM1, PDZ and LIM domain protein 1, humanhuman

Predictions only

Length 329 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1O00151 RNU6-1217P-201ENST00000411276 104 ntBASIC0.45□□□□□ -2.34
PDLIM1O00151 RNU6-785P-201ENST00000411324 104 ntBASIC0.45□□□□□ -2.34
PDLIM1O00151 RNU7-80P-201ENST00000459562 61 ntBASIC0.45□□□□□ -2.34
PDLIM1O00151 RNU6-561P-201ENST00000516222 102 ntBASIC0.45□□□□□ -2.34
PDLIM1O00151 MIR3612-201ENST00000579753 87 ntBASIC0.45□□□□□ -2.34
PDLIM1O00151 U6.90-201ENST00000614007 104 ntBASIC0.45□□□□□ -2.34
PDLIM1O00151 U6.70-201ENST00000620287 104 ntBASIC0.45□□□□□ -2.34
PDLIM1O00151 Y_RNA.352-201ENST00000365439 102 ntBASIC0.44□□□□□ -2.34
PDLIM1O00151 MIR140-201ENST00000385282 100 ntBASIC0.44□□□□□ -2.34
PDLIM1O00151 RNA5SP261-201ENST00000410536 106 ntBASIC0.44□□□□□ -2.34
PDLIM1O00151 Y_RNA.618-201ENST00000410949 107 ntBASIC0.44□□□□□ -2.34
PDLIM1O00151 AL136320.1-201ENST00000417273 430 ntTSL 3 BASIC0.44□□□□□ -2.34
PDLIM1O00151 RNU6-1132P-201ENST00000459214 107 ntBASIC0.44□□□□□ -2.34
PDLIM1O00151 RNU7-185P-201ENST00000459215 60 ntBASIC0.44□□□□□ -2.34
PDLIM1O00151 RNU7-45P-201ENST00000459460 63 ntBASIC0.44□□□□□ -2.34
PDLIM1O00151 AC097639.2-201ENST00000603159 172 ntBASIC0.44□□□□□ -2.34
PDLIM1O00151 DLEU2_5.2-201ENST00000610606 84 ntBASIC0.44□□□□□ -2.34
PDLIM1O00151 Y_RNA.812-201ENST00000610788 101 ntBASIC0.44□□□□□ -2.34
PDLIM1O00151 Y_RNA.784-201ENST00000613803 101 ntBASIC0.44□□□□□ -2.34
PDLIM1O00151 Y_RNA.787-201ENST00000616522 101 ntBASIC0.44□□□□□ -2.34
PDLIM1O00151 Y_RNA.780-201ENST00000617336 101 ntBASIC0.44□□□□□ -2.34
PDLIM1O00151 Y_RNA.801-201ENST00000619005 101 ntBASIC0.44□□□□□ -2.34
PDLIM1O00151 MIR6515-201ENST00000619843 57 ntBASIC0.44□□□□□ -2.34
PDLIM1O00151 MIR6717-201ENST00000622747 73 ntBASIC0.44□□□□□ -2.34
PDLIM1O00151 CALCRL-202ENST00000409998 5223 ntAPPRIS P1 TSL 5 BASIC0.44□□□□□ -2.34
PDLIM1O00151 MIR18A-201ENST00000362310 71 ntBASIC0.43□□□□□ -2.34
PDLIM1O00151 RNU6-103P-201ENST00000363686 107 ntBASIC0.43□□□□□ -2.34
PDLIM1O00151 Y_RNA.454-201ENST00000384224 113 ntBASIC0.43□□□□□ -2.34
PDLIM1O00151 Y_RNA.459-201ENST00000384251 102 ntBASIC0.43□□□□□ -2.34
PDLIM1O00151 Y_RNA.542-201ENST00000384641 111 ntBASIC0.43□□□□□ -2.34
PDLIM1O00151 MIR489-201ENST00000384923 84 ntBASIC0.43□□□□□ -2.34
PDLIM1O00151 MIR125B2-201ENST00000385128 89 ntBASIC0.43□□□□□ -2.34
PDLIM1O00151 AL121914.1-201ENST00000450188 156 ntBASIC0.43□□□□□ -2.34
PDLIM1O00151 RNU7-156P-201ENST00000517214 74 ntBASIC0.43□□□□□ -2.34
PDLIM1O00151 ANGPTL3-201ENST00000371129 2805 ntAPPRIS P1 TSL 1 (best) BASIC0.43□□□□□ -2.34
PDLIM1O00151 AL596211.1-201ENST00000569873 2277 ntBASIC0.43□□□□□ -2.34
PDLIM1O00151 RNU6-653P-201ENST00000363074 106 ntBASIC0.42□□□□□ -2.34
PDLIM1O00151 Y_RNA.145-201ENST00000363527 102 ntBASIC0.42□□□□□ -2.34
PDLIM1O00151 RNY1-201ENST00000364228 113 ntBASIC0.42□□□□□ -2.34
PDLIM1O00151 Y_RNA.292-201ENST00000364904 97 ntBASIC0.42□□□□□ -2.34
PDLIM1O00151 RNU4-45P-201ENST00000365469 141 ntBASIC0.42□□□□□ -2.34
PDLIM1O00151 Y_RNA.396-201ENST00000383949 103 ntBASIC0.42□□□□□ -2.34
PDLIM1O00151 RNU6-679P-201ENST00000391003 106 ntBASIC0.42□□□□□ -2.34
PDLIM1O00151 MIR936-201ENST00000401264 98 ntBASIC0.42□□□□□ -2.34
PDLIM1O00151 RNA5SP193-201ENST00000410353 107 ntBASIC0.42□□□□□ -2.34
PDLIM1O00151 AL135790.1-201ENST00000427161 157 ntTSL 3 BASIC0.42□□□□□ -2.34
PDLIM1O00151 AC098934.3-201ENST00000430450 190 ntBASIC0.42□□□□□ -2.34
PDLIM1O00151 SEPT7P4-201ENST00000437076 306 ntBASIC0.42□□□□□ -2.34
PDLIM1O00151 RPL39P25-201ENST00000449384 154 ntBASIC0.42□□□□□ -2.34
PDLIM1O00151 RNU7-70P-201ENST00000516941 66 ntBASIC0.42□□□□□ -2.34
PDLIM1O00151 MIR4643-201ENST00000577473 78 ntBASIC0.42□□□□□ -2.34
PDLIM1O00151 MIR4711-201ENST00000578274 70 ntBASIC0.42□□□□□ -2.34
PDLIM1O00151 MIR3152-201ENST00000579801 74 ntBASIC0.42□□□□□ -2.34
PDLIM1O00151 AL442067.1-201ENST00000613261 223 ntBASIC0.42□□□□□ -2.34
PDLIM1O00151 OMD-201ENST00000375550 2449 ntAPPRIS P1 TSL 1 (best) BASIC0.42□□□□□ -2.34
PDLIM1O00151 Y_RNA.47-201ENST00000362697 108 ntBASIC0.41□□□□□ -2.34
PDLIM1O00151 Y_RNA.149-201ENST00000363558 117 ntBASIC0.41□□□□□ -2.34
PDLIM1O00151 RNU6-472P-201ENST00000384299 107 ntBASIC0.41□□□□□ -2.34
PDLIM1O00151 MIR548F4-201ENST00000408515 105 ntBASIC0.41□□□□□ -2.34
PDLIM1O00151 RNA5SP237-201ENST00000410414 113 ntBASIC0.41□□□□□ -2.34
PDLIM1O00151 AC114737.2-201ENST00000421583 173 ntBASIC0.41□□□□□ -2.34
PDLIM1O00151 RNU7-102P-201ENST00000458948 62 ntBASIC0.41□□□□□ -2.34
PDLIM1O00151 MIR4744-201ENST00000581563 82 ntBASIC0.41□□□□□ -2.34
PDLIM1O00151 5S_rRNA.15-201ENST00000611169 127 ntBASIC0.41□□□□□ -2.34
PDLIM1O00151 Y_RNA.76-201ENST00000362931 109 ntBASIC0.4□□□□□ -2.35
PDLIM1O00151 RNU6-1292P-201ENST00000383856 107 ntBASIC0.4□□□□□ -2.35
PDLIM1O00151 MT-TF-201ENST00000387314 71 ntBASIC0.4□□□□□ -2.35
PDLIM1O00151 AL162399.1-201ENST00000426090 130 ntTSL 3 BASIC0.4□□□□□ -2.35
PDLIM1O00151 AL117187.1-201ENST00000555482 181 ntBASIC0.4□□□□□ -2.35
PDLIM1O00151 MIR5197-201ENST00000583721 112 ntBASIC0.4□□□□□ -2.35
PDLIM1O00151 PVT1_3.1-201ENST00000620853 95 ntBASIC0.4□□□□□ -2.35
PDLIM1O00151 MIR5087-201ENST00000635826 76 ntBASIC0.4□□□□□ -2.35
PDLIM1O00151 MIR376A2-201ENST00000636782 80 ntBASIC0.4□□□□□ -2.35
PDLIM1O00151 MIR30D-201ENST00000362283 70 ntBASIC0.39□□□□□ -2.35
PDLIM1O00151 Y_RNA.288-201ENST00000364854 92 ntBASIC0.39□□□□□ -2.35
PDLIM1O00151 SNORA20-201ENST00000384662 132 ntBASIC0.39□□□□□ -2.35
PDLIM1O00151 RNU6-1011P-201ENST00000384668 107 ntBASIC0.39□□□□□ -2.35
PDLIM1O00151 MIR598-201ENST00000384868 97 ntBASIC0.39□□□□□ -2.35
PDLIM1O00151 MIR563-201ENST00000385080 79 ntBASIC0.39□□□□□ -2.35
PDLIM1O00151 SNORA26.6-201ENST00000391256 115 ntBASIC0.39□□□□□ -2.35
PDLIM1O00151 SNORD93-201ENST00000408813 74 ntBASIC0.39□□□□□ -2.35
PDLIM1O00151 RNU2-38P-201ENST00000410856 79 ntBASIC0.39□□□□□ -2.35
PDLIM1O00151 RN7SKP12-201ENST00000516275 143 ntBASIC0.39□□□□□ -2.35
PDLIM1O00151 RNU6-229P-201ENST00000516614 102 ntBASIC0.39□□□□□ -2.35
PDLIM1O00151 AC090897.1-201ENST00000580909 226 ntBASIC0.39□□□□□ -2.35
PDLIM1O00151 AC008608.1-201ENST00000603910 127 ntBASIC0.39□□□□□ -2.35
PDLIM1O00151 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC0.39□□□□□ -2.35
PDLIM1O00151 AC091932.4-201ENST00000623386 200 ntBASIC0.39□□□□□ -2.35
PDLIM1O00151 SNORD18A-201ENST00000363753 72 ntBASIC0.38□□□□□ -2.35
PDLIM1O00151 Y_RNA.308-201ENST00000365043 101 ntBASIC0.38□□□□□ -2.35
PDLIM1O00151 RNA5SP117-201ENST00000365294 118 ntBASIC0.38□□□□□ -2.35
PDLIM1O00151 SNORA50A-201ENST00000384225 134 ntBASIC0.38□□□□□ -2.35
PDLIM1O00151 MIR548H3-201ENST00000408771 118 ntBASIC0.38□□□□□ -2.35
PDLIM1O00151 SNORD127-201ENST00000458892 86 ntBASIC0.38□□□□□ -2.35
PDLIM1O00151 Y_RNA.797-201ENST00000515977 94 ntBASIC0.38□□□□□ -2.35
PDLIM1O00151 RNY3P16-201ENST00000516338 101 ntBASIC0.38□□□□□ -2.35
PDLIM1O00151 SNORD116-25-201ENST00000516517 92 ntBASIC0.38□□□□□ -2.35
PDLIM1O00151 SNORD92-201ENST00000585078 85 ntBASIC0.38□□□□□ -2.35
PDLIM1O00151 AC092634.7-201ENST00000621022 103 ntBASIC0.38□□□□□ -2.35
PDLIM1O00151 AC243829.3-201ENST00000622177 108 ntBASIC0.38□□□□□ -2.35
Retrieved 100 of 98,524 protein–RNA pairs in 107.7 ms