Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 RNA5SP347-201ENST00000362445 119 ntBASIC0.52□□□□□ -2.33
LHX3Q9UBR4 RNU6-1309P-201ENST00000363305 108 ntBASIC0.52□□□□□ -2.33
LHX3Q9UBR4 Y_RNA.199-201ENST00000364014 102 ntBASIC0.52□□□□□ -2.33
LHX3Q9UBR4 RNY1P8-201ENST00000383970 114 ntBASIC0.52□□□□□ -2.33
LHX3Q9UBR4 Y_RNA.432-201ENST00000384087 111 ntBASIC0.52□□□□□ -2.33
LHX3Q9UBR4 Y_RNA.483-201ENST00000384380 101 ntBASIC0.52□□□□□ -2.33
LHX3Q9UBR4 Y_RNA.540-201ENST00000384638 111 ntBASIC0.52□□□□□ -2.33
LHX3Q9UBR4 RNU6-1228P-201ENST00000391014 107 ntBASIC0.52□□□□□ -2.33
LHX3Q9UBR4 AL606845.1-201ENST00000404881 255 ntBASIC0.52□□□□□ -2.33
LHX3Q9UBR4 Y_RNA.590-201ENST00000410140 107 ntBASIC0.52□□□□□ -2.33
LHX3Q9UBR4 RNU6-1190P-201ENST00000410811 104 ntBASIC0.52□□□□□ -2.33
LHX3Q9UBR4 Y_RNA.679-201ENST00000516416 91 ntBASIC0.52□□□□□ -2.33
LHX3Q9UBR4 Z83818.1-201ENST00000603584 150 ntBASIC0.52□□□□□ -2.33
LHX3Q9UBR4 U2.14-201ENST00000615943 113 ntBASIC0.52□□□□□ -2.33
LHX3Q9UBR4 MIR6740-201ENST00000618268 113 ntBASIC0.52□□□□□ -2.33
LHX3Q9UBR4 MT-ATP8-201ENST00000361851 207 ntAPPRIS P1 BASIC0.51□□□□□ -2.33
LHX3Q9UBR4 MT-TW-201ENST00000387382 68 ntBASIC0.51□□□□□ -2.33
LHX3Q9UBR4 SNORA26-201ENST00000391286 122 ntBASIC0.51□□□□□ -2.33
LHX3Q9UBR4 MIR1302-6-201ENST00000408466 90 ntBASIC0.51□□□□□ -2.33
LHX3Q9UBR4 RNU2-55P-201ENST00000411146 174 ntBASIC0.51□□□□□ -2.33
LHX3Q9UBR4 SNORD2.1-201ENST00000458762 69 ntBASIC0.51□□□□□ -2.33
LHX3Q9UBR4 RNU2-11P-201ENST00000459191 187 ntBASIC0.51□□□□□ -2.33
LHX3Q9UBR4 AC010177.1-201ENST00000547819 366 ntTSL 3 BASIC0.51□□□□□ -2.33
LHX3Q9UBR4 AC020891.4-201ENST00000605745 93 ntBASIC0.51□□□□□ -2.33
LHX3Q9UBR4 AC010332.2-201ENST00000613083 1904 ntBASIC0.51□□□□□ -2.33
LHX3Q9UBR4 MIR5087-201ENST00000635826 76 ntBASIC0.51□□□□□ -2.33
LHX3Q9UBR4 Z97988.1-201ENST00000637697 135 ntBASIC0.51□□□□□ -2.33
LHX3Q9UBR4 Y_RNA.82-201ENST00000363000 102 ntBASIC0.5□□□□□ -2.33
LHX3Q9UBR4 Y_RNA.92-201ENST00000363043 102 ntBASIC0.5□□□□□ -2.33
LHX3Q9UBR4 Y_RNA.235-201ENST00000364412 102 ntBASIC0.5□□□□□ -2.33
LHX3Q9UBR4 SNORA63C-201ENST00000364578 129 ntBASIC0.5□□□□□ -2.33
LHX3Q9UBR4 SNORA1.1-201ENST00000364671 133 ntBASIC0.5□□□□□ -2.33
LHX3Q9UBR4 Y_RNA.306-201ENST00000365015 102 ntBASIC0.5□□□□□ -2.33
LHX3Q9UBR4 Y_RNA.312-201ENST00000365089 102 ntBASIC0.5□□□□□ -2.33
LHX3Q9UBR4 Y_RNA.322-201ENST00000365151 102 ntBASIC0.5□□□□□ -2.33
LHX3Q9UBR4 RNU6-1189P-201ENST00000383958 107 ntBASIC0.5□□□□□ -2.33
LHX3Q9UBR4 Y_RNA.461-201ENST00000384263 103 ntBASIC0.5□□□□□ -2.33
LHX3Q9UBR4 RNY1P4-201ENST00000384595 115 ntBASIC0.5□□□□□ -2.33
LHX3Q9UBR4 AL583859.1-201ENST00000455871 335 ntTSL 3 BASIC0.5□□□□□ -2.33
LHX3Q9UBR4 Y_RNA.650-201ENST00000459002 102 ntBASIC0.5□□□□□ -2.33
LHX3Q9UBR4 Y_RNA.777-201ENST00000516982 102 ntBASIC0.5□□□□□ -2.33
LHX3Q9UBR4 Y_RNA.720-201ENST00000517166 92 ntBASIC0.5□□□□□ -2.33
LHX3Q9UBR4 AL442663.2-201ENST00000554385 511 ntBASIC0.5□□□□□ -2.33
LHX3Q9UBR4 MIR4804-201ENST00000581683 73 ntBASIC0.5□□□□□ -2.33
LHX3Q9UBR4 MIR4676-201ENST00000583078 72 ntBASIC0.5□□□□□ -2.33
LHX3Q9UBR4 Y_RNA.771-201ENST00000598668 102 ntBASIC0.5□□□□□ -2.33
LHX3Q9UBR4 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC0.5□□□□□ -2.33
LHX3Q9UBR4 Y_RNA.789-201ENST00000622480 102 ntBASIC0.5□□□□□ -2.33
LHX3Q9UBR4 EVI2B-201ENST00000330927 1999 ntAPPRIS P1 TSL 1 (best) BASIC0.5□□□□□ -2.33
LHX3Q9UBR4 Y_RNA.304-201ENST00000365011 112 ntBASIC0.49□□□□□ -2.33
LHX3Q9UBR4 RNU6-945P-201ENST00000383947 107 ntBASIC0.49□□□□□ -2.33
LHX3Q9UBR4 Y_RNA.416-201ENST00000384014 113 ntBASIC0.49□□□□□ -2.33
LHX3Q9UBR4 Y_RNA.422-201ENST00000384054 114 ntBASIC0.49□□□□□ -2.33
LHX3Q9UBR4 SNORA1-201ENST00000384107 130 ntBASIC0.49□□□□□ -2.33
LHX3Q9UBR4 RNY3P5-201ENST00000384127 102 ntBASIC0.49□□□□□ -2.33
LHX3Q9UBR4 MIR588-201ENST00000384900 83 ntBASIC0.49□□□□□ -2.33
LHX3Q9UBR4 MIR573-201ENST00000384964 99 ntBASIC0.49□□□□□ -2.33
LHX3Q9UBR4 MIR616-201ENST00000385293 97 ntBASIC0.49□□□□□ -2.33
LHX3Q9UBR4 RNU6-602P-201ENST00000411155 105 ntBASIC0.49□□□□□ -2.33
LHX3Q9UBR4 AL157398.1-201ENST00000452981 186 ntBASIC0.49□□□□□ -2.33
LHX3Q9UBR4 RNU6-229P-201ENST00000516614 102 ntBASIC0.49□□□□□ -2.33
LHX3Q9UBR4 AL365265.1-201ENST00000621045 234 ntBASIC0.49□□□□□ -2.33
LHX3Q9UBR4 MIR8062-201ENST00000621515 85 ntBASIC0.49□□□□□ -2.33
LHX3Q9UBR4 MIR335-201ENST00000362173 94 ntBASIC0.48□□□□□ -2.33
LHX3Q9UBR4 Y_RNA.410-201ENST00000383992 113 ntBASIC0.48□□□□□ -2.33
LHX3Q9UBR4 Y_RNA.440-201ENST00000384120 114 ntBASIC0.48□□□□□ -2.33
LHX3Q9UBR4 SNORD77.3-201ENST00000391113 65 ntBASIC0.48□□□□□ -2.33
LHX3Q9UBR4 MIR548I3-201ENST00000408378 149 ntBASIC0.48□□□□□ -2.33
LHX3Q9UBR4 RNU6-177P-201ENST00000411257 104 ntBASIC0.48□□□□□ -2.33
LHX3Q9UBR4 AC012668.1-201ENST00000457625 228 ntTSL 3 BASIC0.48□□□□□ -2.33
LHX3Q9UBR4 RNU7-96P-201ENST00000459535 64 ntBASIC0.48□□□□□ -2.33
LHX3Q9UBR4 RNU6-998P-201ENST00000515894 101 ntBASIC0.48□□□□□ -2.33
LHX3Q9UBR4 RNU6-561P-201ENST00000516222 102 ntBASIC0.48□□□□□ -2.33
LHX3Q9UBR4 RNA5SP153-201ENST00000516498 76 ntBASIC0.48□□□□□ -2.33
LHX3Q9UBR4 AC006504.6-201ENST00000590142 199 ntBASIC0.48□□□□□ -2.33
LHX3Q9UBR4 uc_338.17-201ENST00000619633 179 ntBASIC0.48□□□□□ -2.33
LHX3Q9UBR4 SAMD9-203ENST00000620985 6754 ntAPPRIS P1 TSL 2 BASIC0.47□□□□□ -2.33
LHX3Q9UBR4 Y_RNA.23-201ENST00000362496 106 ntBASIC0.47□□□□□ -2.33
LHX3Q9UBR4 SNORD114-23-201ENST00000363536 72 ntBASIC0.47□□□□□ -2.33
LHX3Q9UBR4 RNU6-1160P-201ENST00000384546 104 ntBASIC0.47□□□□□ -2.33
LHX3Q9UBR4 RNU6-1237P-201ENST00000384777 107 ntBASIC0.47□□□□□ -2.33
LHX3Q9UBR4 SNORD12C-201ENST00000386307 89 ntBASIC0.47□□□□□ -2.33
LHX3Q9UBR4 MIR936-201ENST00000401264 98 ntBASIC0.47□□□□□ -2.33
LHX3Q9UBR4 RNA5SP193-201ENST00000410353 107 ntBASIC0.47□□□□□ -2.33
LHX3Q9UBR4 AC137770.1-201ENST00000504620 530 ntTSL 3 BASIC0.47□□□□□ -2.33
LHX3Q9UBR4 AC007991.2-201ENST00000520185 102 ntTSL 5 BASIC0.47□□□□□ -2.33
LHX3Q9UBR4 EBAG9-207ENST00000531677 777 ntTSL 1 (best) BASIC0.47□□□□□ -2.33
LHX3Q9UBR4 AL122017.1-202ENST00000570612 319 ntTSL 5 BASIC0.47□□□□□ -2.33
LHX3Q9UBR4 HOXA11-AS1_6.1-201ENST00000620092 179 ntBASIC0.47□□□□□ -2.33
LHX3Q9UBR4 U6.104-201ENST00000637979 90 ntBASIC0.47□□□□□ -2.33
LHX3Q9UBR4 Y_RNA.54-201ENST00000362766 105 ntBASIC0.46□□□□□ -2.34
LHX3Q9UBR4 Y_RNA.326-201ENST00000365176 113 ntBASIC0.46□□□□□ -2.34
LHX3Q9UBR4 RPS27-201ENST00000368567 350 ntAPPRIS P1 TSL 1 (best) BASIC0.46□□□□□ -2.34
LHX3Q9UBR4 Y_RNA.574-201ENST00000384766 95 ntBASIC0.46□□□□□ -2.34
LHX3Q9UBR4 MIR193B-201ENST00000384907 83 ntBASIC0.46□□□□□ -2.34
LHX3Q9UBR4 RNU6-381P-201ENST00000391259 108 ntBASIC0.46□□□□□ -2.34
LHX3Q9UBR4 RNU6-1165P-201ENST00000410119 107 ntBASIC0.46□□□□□ -2.34
LHX3Q9UBR4 RNU7-56P-201ENST00000458744 62 ntBASIC0.46□□□□□ -2.34
LHX3Q9UBR4 snoU13.2-201ENST00000459201 104 ntBASIC0.46□□□□□ -2.34
LHX3Q9UBR4 RNU7-45P-201ENST00000459460 63 ntBASIC0.46□□□□□ -2.34
Retrieved 100 of 98,524 protein–RNA pairs in 279 ms