Protein–RNA interactions for Protein: Q9UBD9

CLCF1, Cardiotrophin-like cytokine factor 1, humanhuman

Predictions only

Length 225 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCF1Q9UBD9 RNU6-1338P-201ENST00000516328 91 ntBASIC0.33□□□□□ -2.36
CLCF1Q9UBD9 SCARNA24.2-201ENST00000516968 130 ntBASIC0.33□□□□□ -2.36
CLCF1Q9UBD9 MIR4680-201ENST00000580906 66 ntBASIC0.33□□□□□ -2.36
CLCF1Q9UBD9 AC011825.2-201ENST00000583138 553 ntTSL 4 BASIC0.33□□□□□ -2.36
CLCF1Q9UBD9 MIR3171-201ENST00000584270 74 ntBASIC0.33□□□□□ -2.36
CLCF1Q9UBD9 AL162730.1-201ENST00000605734 292 ntBASIC0.33□□□□□ -2.36
CLCF1Q9UBD9 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.32□□□□□ -2.36
CLCF1Q9UBD9 Y_RNA.202-201ENST00000364083 110 ntBASIC0.32□□□□□ -2.36
CLCF1Q9UBD9 RNU6-1289P-201ENST00000384431 106 ntBASIC0.32□□□□□ -2.36
CLCF1Q9UBD9 RNU6-1165P-201ENST00000410119 107 ntBASIC0.32□□□□□ -2.36
CLCF1Q9UBD9 RNU2-70P-201ENST00000410718 179 ntBASIC0.32□□□□□ -2.36
CLCF1Q9UBD9 RNU6-602P-201ENST00000411155 105 ntBASIC0.32□□□□□ -2.36
CLCF1Q9UBD9 AL162399.1-201ENST00000426090 130 ntTSL 3 BASIC0.32□□□□□ -2.36
CLCF1Q9UBD9 snoU13.2-201ENST00000459201 104 ntBASIC0.32□□□□□ -2.36
CLCF1Q9UBD9 RNU6-998P-201ENST00000515894 101 ntBASIC0.32□□□□□ -2.36
CLCF1Q9UBD9 MIR6779-201ENST00000617283 64 ntBASIC0.32□□□□□ -2.36
CLCF1Q9UBD9 Y_RNA.66-201ENST00000362862 102 ntBASIC0.31□□□□□ -2.36
CLCF1Q9UBD9 RNU6-1309P-201ENST00000363305 108 ntBASIC0.31□□□□□ -2.36
CLCF1Q9UBD9 Y_RNA.634-201ENST00000364811 113 ntBASIC0.31□□□□□ -2.36
CLCF1Q9UBD9 RNU6-1189P-201ENST00000383958 107 ntBASIC0.31□□□□□ -2.36
CLCF1Q9UBD9 RNU6-364P-201ENST00000384387 107 ntBASIC0.31□□□□□ -2.36
CLCF1Q9UBD9 Y_RNA.572-201ENST00000384757 98 ntBASIC0.31□□□□□ -2.36
CLCF1Q9UBD9 MIR193B-201ENST00000384907 83 ntBASIC0.31□□□□□ -2.36
CLCF1Q9UBD9 MIR125B2-201ENST00000385128 89 ntBASIC0.31□□□□□ -2.36
CLCF1Q9UBD9 RNU6-1319P-201ENST00000390855 104 ntBASIC0.31□□□□□ -2.36
CLCF1Q9UBD9 RNU6-747P-201ENST00000390928 104 ntBASIC0.31□□□□□ -2.36
CLCF1Q9UBD9 RNU6-241P-201ENST00000391148 104 ntBASIC0.31□□□□□ -2.36
CLCF1Q9UBD9 MIR548I3-201ENST00000408378 149 ntBASIC0.31□□□□□ -2.36
CLCF1Q9UBD9 RNU6-447P-201ENST00000410293 104 ntBASIC0.31□□□□□ -2.36
CLCF1Q9UBD9 RNU6-1118P-201ENST00000410382 104 ntBASIC0.31□□□□□ -2.36
CLCF1Q9UBD9 RNU6-1076P-201ENST00000410397 104 ntBASIC0.31□□□□□ -2.36
CLCF1Q9UBD9 RNU6-355P-201ENST00000410427 104 ntBASIC0.31□□□□□ -2.36
CLCF1Q9UBD9 RNU6-791P-201ENST00000410467 104 ntBASIC0.31□□□□□ -2.36
CLCF1Q9UBD9 RNU6-705P-201ENST00000410601 104 ntBASIC0.31□□□□□ -2.36
CLCF1Q9UBD9 RNU6-1100P-201ENST00000410691 104 ntBASIC0.31□□□□□ -2.36
CLCF1Q9UBD9 RNU6-1203P-201ENST00000410703 110 ntBASIC0.31□□□□□ -2.36
CLCF1Q9UBD9 RNU6-860P-201ENST00000410860 104 ntBASIC0.31□□□□□ -2.36
CLCF1Q9UBD9 RNU6-1217P-201ENST00000411276 104 ntBASIC0.31□□□□□ -2.36
CLCF1Q9UBD9 RNU6-785P-201ENST00000411324 104 ntBASIC0.31□□□□□ -2.36
CLCF1Q9UBD9 HMGN1P33-201ENST00000432945 451 ntBASIC0.31□□□□□ -2.36
CLCF1Q9UBD9 AF228730.3-201ENST00000436691 102 ntBASIC0.31□□□□□ -2.36
CLCF1Q9UBD9 RNU2-11P-201ENST00000459191 187 ntBASIC0.31□□□□□ -2.36
CLCF1Q9UBD9 RNA5SP153-201ENST00000516498 76 ntBASIC0.31□□□□□ -2.36
CLCF1Q9UBD9 uc_338.6-201ENST00000613544 171 ntBASIC0.31□□□□□ -2.36
CLCF1Q9UBD9 U6.90-201ENST00000614007 104 ntBASIC0.31□□□□□ -2.36
CLCF1Q9UBD9 U6.70-201ENST00000620287 104 ntBASIC0.31□□□□□ -2.36
CLCF1Q9UBD9 Y_RNA.7-201ENST00000362352 102 ntBASIC0.3□□□□□ -2.36
CLCF1Q9UBD9 Y_RNA.153-201ENST00000363615 91 ntBASIC0.3□□□□□ -2.36
CLCF1Q9UBD9 Y_RNA.216-201ENST00000364205 93 ntBASIC0.3□□□□□ -2.36
CLCF1Q9UBD9 Y_RNA.432-201ENST00000384087 111 ntBASIC0.3□□□□□ -2.36
CLCF1Q9UBD9 MIR1257-201ENST00000408490 117 ntBASIC0.3□□□□□ -2.36
CLCF1Q9UBD9 LINC00345-201ENST00000443679 285 ntTSL 5 BASIC0.3□□□□□ -2.36
CLCF1Q9UBD9 AL138752.1-201ENST00000452964 351 ntBASIC0.3□□□□□ -2.36
CLCF1Q9UBD9 RNU7-185P-201ENST00000459215 60 ntBASIC0.3□□□□□ -2.36
CLCF1Q9UBD9 AC020661.2-201ENST00000560114 134 ntBASIC0.3□□□□□ -2.36
CLCF1Q9UBD9 AC004148.1-201ENST00000571506 398 ntTSL 5 BASIC0.3□□□□□ -2.36
CLCF1Q9UBD9 AC090897.1-201ENST00000580909 226 ntBASIC0.3□□□□□ -2.36
CLCF1Q9UBD9 Y_RNA.44-201ENST00000362676 108 ntBASIC0.29□□□□□ -2.36
CLCF1Q9UBD9 RNU6-484P-201ENST00000384016 107 ntBASIC0.29□□□□□ -2.36
CLCF1Q9UBD9 Y_RNA.440-201ENST00000384120 114 ntBASIC0.29□□□□□ -2.36
CLCF1Q9UBD9 MT-TF-201ENST00000387314 71 ntBASIC0.29□□□□□ -2.36
CLCF1Q9UBD9 SNORD100-201ENST00000408573 76 ntBASIC0.29□□□□□ -2.36
CLCF1Q9UBD9 AL353742.1-201ENST00000453455 224 ntTSL 3 BASIC0.29□□□□□ -2.36
CLCF1Q9UBD9 MTND5P22-201ENST00000458380 195 ntBASIC0.29□□□□□ -2.36
CLCF1Q9UBD9 AC002350.1-201ENST00000490759 375 ntBASIC0.29□□□□□ -2.36
CLCF1Q9UBD9 AC092634.7-201ENST00000621022 103 ntBASIC0.29□□□□□ -2.36
CLCF1Q9UBD9 AC090625.1-201ENST00000357130 210 ntBASIC0.28□□□□□ -2.36
CLCF1Q9UBD9 MIR302B-201ENST00000362188 73 ntBASIC0.28□□□□□ -2.36
CLCF1Q9UBD9 Y_RNA.91-201ENST00000363042 107 ntBASIC0.28□□□□□ -2.36
CLCF1Q9UBD9 Y_RNA.117-201ENST00000363294 101 ntBASIC0.28□□□□□ -2.36
CLCF1Q9UBD9 RPS27-201ENST00000368567 350 ntAPPRIS P1 TSL 1 (best) BASIC0.28□□□□□ -2.36
CLCF1Q9UBD9 MIR563-201ENST00000385080 79 ntBASIC0.28□□□□□ -2.36
CLCF1Q9UBD9 RNU6-985P-201ENST00000410182 104 ntBASIC0.28□□□□□ -2.36
CLCF1Q9UBD9 RNA5SP261-201ENST00000410536 106 ntBASIC0.28□□□□□ -2.36
CLCF1Q9UBD9 RNU7-102P-201ENST00000458948 62 ntBASIC0.28□□□□□ -2.36
CLCF1Q9UBD9 RNU6-570P-201ENST00000517051 105 ntBASIC0.28□□□□□ -2.36
CLCF1Q9UBD9 RNU7-156P-201ENST00000517214 74 ntBASIC0.28□□□□□ -2.36
CLCF1Q9UBD9 AC097639.2-201ENST00000603159 172 ntBASIC0.28□□□□□ -2.36
CLCF1Q9UBD9 MIR342-201ENST00000362212 99 ntBASIC0.27□□□□□ -2.37
CLCF1Q9UBD9 MIRLET7D-201ENST00000362263 87 ntBASIC0.27□□□□□ -2.37
CLCF1Q9UBD9 Y_RNA.199-201ENST00000364014 102 ntBASIC0.27□□□□□ -2.37
CLCF1Q9UBD9 Y_RNA.205-201ENST00000364128 113 ntBASIC0.27□□□□□ -2.37
CLCF1Q9UBD9 MT-TT-201ENST00000387460 66 ntBASIC0.27□□□□□ -2.37
CLCF1Q9UBD9 RNU6-679P-201ENST00000391003 106 ntBASIC0.27□□□□□ -2.37
CLCF1Q9UBD9 RNU6-1228P-201ENST00000391014 107 ntBASIC0.27□□□□□ -2.37
CLCF1Q9UBD9 Y_RNA.622-201ENST00000411091 108 ntBASIC0.27□□□□□ -2.37
CLCF1Q9UBD9 SNRPGP8-201ENST00000454064 226 ntBASIC0.27□□□□□ -2.37
CLCF1Q9UBD9 AL583859.1-201ENST00000455871 335 ntTSL 3 BASIC0.27□□□□□ -2.37
CLCF1Q9UBD9 TRBVB-201ENST00000477100 408 ntBASIC0.27□□□□□ -2.37
CLCF1Q9UBD9 AL122017.1-202ENST00000570612 319 ntTSL 5 BASIC0.27□□□□□ -2.37
CLCF1Q9UBD9 MIR1273G-201ENST00000577677 100 ntBASIC0.27□□□□□ -2.37
CLCF1Q9UBD9 SNORD92-201ENST00000585078 85 ntBASIC0.27□□□□□ -2.37
CLCF1Q9UBD9 5S_rRNA.15-201ENST00000611169 127 ntBASIC0.27□□□□□ -2.37
CLCF1Q9UBD9 MIR103A1-201ENST00000362165 78 ntBASIC0.26□□□□□ -2.37
CLCF1Q9UBD9 Y_RNA.82-201ENST00000363000 102 ntBASIC0.26□□□□□ -2.37
CLCF1Q9UBD9 Y_RNA.92-201ENST00000363043 102 ntBASIC0.26□□□□□ -2.37
CLCF1Q9UBD9 Y_RNA.235-201ENST00000364412 102 ntBASIC0.26□□□□□ -2.37
CLCF1Q9UBD9 Y_RNA.306-201ENST00000365015 102 ntBASIC0.26□□□□□ -2.37
CLCF1Q9UBD9 Y_RNA.312-201ENST00000365089 102 ntBASIC0.26□□□□□ -2.37
CLCF1Q9UBD9 Y_RNA.322-201ENST00000365151 102 ntBASIC0.26□□□□□ -2.37
Retrieved 100 of 98,524 protein–RNA pairs in 164.6 ms