Protein–RNA interactions for Protein: Q9NY46

SCN3A, Sodium channel protein type 3 subunit alpha, humanhuman

Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3AQ9NY46 RNU6-449P-201ENST00000383914 107 ntBASIC-0.64□□□□□ -2.51
SCN3AQ9NY46 RNU6-1119P-201ENST00000384349 108 ntBASIC-0.64□□□□□ -2.51
SCN3AQ9NY46 Y_RNA.488-201ENST00000384403 102 ntBASIC-0.64□□□□□ -2.51
SCN3AQ9NY46 MIR588-201ENST00000384900 83 ntBASIC-0.64□□□□□ -2.51
SCN3AQ9NY46 AC024067.1-201ENST00000426199 223 ntBASIC-0.64□□□□□ -2.51
SCN3AQ9NY46 AL035258.1-201ENST00000439450 439 ntTSL 3 BASIC-0.64□□□□□ -2.51
SCN3AQ9NY46 Y_RNA.704-201ENST00000516851 102 ntBASIC-0.64□□□□□ -2.51
SCN3AQ9NY46 RNU6-1270P-201ENST00000517128 108 ntBASIC-0.64□□□□□ -2.51
SCN3AQ9NY46 MIR4790-201ENST00000577799 79 ntBASIC-0.64□□□□□ -2.51
SCN3AQ9NY46 MIR4436A-201ENST00000585278 85 ntBASIC-0.64□□□□□ -2.51
SCN3AQ9NY46 U6.92-201ENST00000636464 89 ntBASIC-0.64□□□□□ -2.51
SCN3AQ9NY46 Y_RNA.41-201ENST00000362646 102 ntBASIC-0.65□□□□□ -2.51
SCN3AQ9NY46 RNU6-484P-201ENST00000384016 107 ntBASIC-0.65□□□□□ -2.51
SCN3AQ9NY46 RNU6-926P-201ENST00000384075 107 ntBASIC-0.65□□□□□ -2.51
SCN3AQ9NY46 Y_RNA.495-201ENST00000384435 112 ntBASIC-0.65□□□□□ -2.51
SCN3AQ9NY46 Y_RNA.514-201ENST00000384528 112 ntBASIC-0.65□□□□□ -2.51
SCN3AQ9NY46 AL590004.1-201ENST00000405321 300 ntBASIC-0.65□□□□□ -2.51
SCN3AQ9NY46 MIR4723-201ENST00000585070 81 ntBASIC-0.65□□□□□ -2.51
SCN3AQ9NY46 Y_RNA.246-201ENST00000364495 108 ntBASIC-0.65□□□□□ -2.51
SCN3AQ9NY46 Y_RNA.351-201ENST00000365436 96 ntBASIC-0.65□□□□□ -2.51
SCN3AQ9NY46 RNU6-1189P-201ENST00000383958 107 ntBASIC-0.65□□□□□ -2.51
SCN3AQ9NY46 Y_RNA.457-201ENST00000384237 111 ntBASIC-0.65□□□□□ -2.51
SCN3AQ9NY46 SNORD12C-201ENST00000386307 89 ntBASIC-0.65□□□□□ -2.51
SCN3AQ9NY46 SNORD41.1-201ENST00000391000 69 ntBASIC-0.65□□□□□ -2.51
SCN3AQ9NY46 RNU4-83P-201ENST00000410863 133 ntBASIC-0.65□□□□□ -2.51
SCN3AQ9NY46 RNA5SP67-201ENST00000516422 131 ntBASIC-0.65□□□□□ -2.51
SCN3AQ9NY46 Y_RNA.708-201ENST00000516950 96 ntBASIC-0.65□□□□□ -2.51
SCN3AQ9NY46 EBAG9-207ENST00000531677 777 ntTSL 1 (best) BASIC-0.65□□□□□ -2.51
SCN3AQ9NY46 MIR4662B-201ENST00000579498 81 ntBASIC-0.65□□□□□ -2.51
SCN3AQ9NY46 MIR101-2-201ENST00000362195 79 ntBASIC-0.66□□□□□ -2.52
SCN3AQ9NY46 RNY1P13-201ENST00000365030 105 ntBASIC-0.66□□□□□ -2.52
SCN3AQ9NY46 RNU6-1203P-201ENST00000410703 110 ntBASIC-0.66□□□□□ -2.52
SCN3AQ9NY46 AC009161.1-201ENST00000417306 376 ntBASIC-0.66□□□□□ -2.52
SCN3AQ9NY46 AC108059.2-201ENST00000434626 151 ntBASIC-0.66□□□□□ -2.52
SCN3AQ9NY46 SNORD57-201ENST00000448188 72 ntBASIC-0.66□□□□□ -2.52
SCN3AQ9NY46 RNU6-365P-201ENST00000517113 106 ntBASIC-0.66□□□□□ -2.52
SCN3AQ9NY46 MIR4752-201ENST00000579672 72 ntBASIC-0.66□□□□□ -2.52
SCN3AQ9NY46 PISRT1.1-201ENST00000616930 107 ntBASIC-0.66□□□□□ -2.52
SCN3AQ9NY46 Y_RNA.49-201ENST00000362714 112 ntBASIC-0.67□□□□□ -2.52
SCN3AQ9NY46 Y_RNA.410-201ENST00000383992 113 ntBASIC-0.67□□□□□ -2.52
SCN3AQ9NY46 SNORA1-201ENST00000384107 130 ntBASIC-0.67□□□□□ -2.52
SCN3AQ9NY46 RNY1P9-201ENST00000532431 109 ntBASIC-0.67□□□□□ -2.52
SCN3AQ9NY46 AC105081.1-201ENST00000617727 106 ntBASIC-0.67□□□□□ -2.52
SCN3AQ9NY46 CEP57L1-213ENST00000520883 2055 ntTSL 5 BASIC-0.67□□□□□ -2.52
SCN3AQ9NY46 SNORA63.5-201ENST00000363548 123 ntBASIC-0.67□□□□□ -2.52
SCN3AQ9NY46 SNORA72.6-201ENST00000384520 129 ntBASIC-0.67□□□□□ -2.52
SCN3AQ9NY46 MIR876-201ENST00000401147 81 ntBASIC-0.67□□□□□ -2.52
SCN3AQ9NY46 RNU2-55P-201ENST00000411146 174 ntBASIC-0.67□□□□□ -2.52
SCN3AQ9NY46 ATP1B3-AS1-201ENST00000492725 376 ntTSL 5 BASIC-0.67□□□□□ -2.52
SCN3AQ9NY46 MIR4724-201ENST00000579485 89 ntBASIC-0.67□□□□□ -2.52
SCN3AQ9NY46 RN7SKP299-201ENST00000606679 301 ntBASIC-0.67□□□□□ -2.52
SCN3AQ9NY46 Y_RNA.802-201ENST00000614892 130 ntBASIC-0.67□□□□□ -2.52
SCN3AQ9NY46 AC007485.1-201ENST00000616755 206 ntBASIC-0.67□□□□□ -2.52
SCN3AQ9NY46 RNU6-899P-201ENST00000363947 107 ntBASIC-0.68□□□□□ -2.52
SCN3AQ9NY46 Y_RNA.634-201ENST00000364811 113 ntBASIC-0.68□□□□□ -2.52
SCN3AQ9NY46 Y_RNA.430-201ENST00000384081 110 ntBASIC-0.68□□□□□ -2.52
SCN3AQ9NY46 MIR181A1-201ENST00000385026 110 ntBASIC-0.68□□□□□ -2.52
SCN3AQ9NY46 RNU6-1190P-201ENST00000410811 104 ntBASIC-0.68□□□□□ -2.52
SCN3AQ9NY46 RNU6-138P-201ENST00000515952 107 ntBASIC-0.68□□□□□ -2.52
SCN3AQ9NY46 SNORA25.16-201ENST00000516741 121 ntBASIC-0.68□□□□□ -2.52
SCN3AQ9NY46 LUZP6-201ENST00000589735 177 ntAPPRIS P1 BASIC-0.68□□□□□ -2.52
SCN3AQ9NY46 AC048344.4-201ENST00000619744 527 ntBASIC-0.68□□□□□ -2.52
SCN3AQ9NY46 MIR6717-201ENST00000622747 73 ntBASIC-0.68□□□□□ -2.52
SCN3AQ9NY46 RNU4-84P-201ENST00000364200 139 ntBASIC-0.69□□□□□ -2.52
SCN3AQ9NY46 SNORA20-201ENST00000384662 132 ntBASIC-0.69□□□□□ -2.52
SCN3AQ9NY46 MT-TT-201ENST00000387460 66 ntBASIC-0.69□□□□□ -2.52
SCN3AQ9NY46 MTND1P1-201ENST00000445453 368 ntBASIC-0.69□□□□□ -2.52
SCN3AQ9NY46 MTND5P5-201ENST00000503764 376 ntBASIC-0.69□□□□□ -2.52
SCN3AQ9NY46 SCARNA20.2-201ENST00000516052 116 ntBASIC-0.69□□□□□ -2.52
SCN3AQ9NY46 MIR3974-201ENST00000637126 96 ntBASIC-0.69□□□□□ -2.52
SCN3AQ9NY46 SNORD81.1-201ENST00000363064 77 ntBASIC-0.69□□□□□ -2.52
SCN3AQ9NY46 Y_RNA.222-201ENST00000364264 102 ntBASIC-0.69□□□□□ -2.52
SCN3AQ9NY46 RNU6-708P-201ENST00000384217 107 ntBASIC-0.69□□□□□ -2.52
SCN3AQ9NY46 MIR601-201ENST00000385256 79 ntBASIC-0.69□□□□□ -2.52
SCN3AQ9NY46 MIR196A1-201ENST00000388006 70 ntBASIC-0.69□□□□□ -2.52
SCN3AQ9NY46 RNU6-1248P-201ENST00000391096 64 ntBASIC-0.69□□□□□ -2.52
SCN3AQ9NY46 Y_RNA.757-201ENST00000578934 114 ntBASIC-0.69□□□□□ -2.52
SCN3AQ9NY46 MIR3908-201ENST00000579798 126 ntBASIC-0.69□□□□□ -2.52
SCN3AQ9NY46 AL049861.1-201ENST00000603130 150 ntBASIC-0.69□□□□□ -2.52
SCN3AQ9NY46 AC005014.2-201ENST00000607795 599 ntBASIC-0.69□□□□□ -2.52
SCN3AQ9NY46 uc_338.10-201ENST00000621872 182 ntBASIC-0.69□□□□□ -2.52
SCN3AQ9NY46 RNA5SP133-201ENST00000363368 119 ntBASIC-0.7□□□□□ -2.52
SCN3AQ9NY46 MIR617-201ENST00000385030 97 ntBASIC-0.7□□□□□ -2.52
SCN3AQ9NY46 MIR628-201ENST00000385229 95 ntBASIC-0.7□□□□□ -2.52
SCN3AQ9NY46 MIR548F5-201ENST00000408421 86 ntBASIC-0.7□□□□□ -2.52
SCN3AQ9NY46 RNU6-1148P-201ENST00000410992 104 ntBASIC-0.7□□□□□ -2.52
SCN3AQ9NY46 RNU7-53P-201ENST00000516705 60 ntBASIC-0.7□□□□□ -2.52
SCN3AQ9NY46 AL590491.3-201ENST00000610731 82 ntBASIC-0.7□□□□□ -2.52
SCN3AQ9NY46 U6.109-201ENST00000636749 87 ntBASIC-0.7□□□□□ -2.52
SCN3AQ9NY46 MIR148A-201ENST00000362215 68 ntBASIC-0.71□□□□□ -2.52
SCN3AQ9NY46 Y_RNA.436-201ENST00000384097 102 ntBASIC-0.71□□□□□ -2.52
SCN3AQ9NY46 SNORA18-201ENST00000384416 132 ntBASIC-0.71□□□□□ -2.52
SCN3AQ9NY46 AC244505.6-201ENST00000452829 130 ntBASIC-0.71□□□□□ -2.52
SCN3AQ9NY46 MIR4659A-201ENST00000580269 81 ntBASIC-0.71□□□□□ -2.52
SCN3AQ9NY46 hsa-mir-548d-2.1-201ENST00000582790 97 ntBASIC-0.71□□□□□ -2.52
SCN3AQ9NY46 MIR3611-201ENST00000584484 83 ntBASIC-0.71□□□□□ -2.52
SCN3AQ9NY46 AC079466.2-201ENST00000585394 185 ntTSL 5 BASIC-0.71□□□□□ -2.52
SCN3AQ9NY46 AC133104.2-201ENST00000615272 193 ntBASIC-0.71□□□□□ -2.52
SCN3AQ9NY46 MIR8066-201ENST00000617280 78 ntBASIC-0.71□□□□□ -2.52
SCN3AQ9NY46 RNU5E-4P-201ENST00000364931 120 ntBASIC-0.71□□□□□ -2.52
Retrieved 100 of 98,524 protein–RNA pairs in 173.2 ms