Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 RPS29P24-201ENST00000486345 171 ntBASIC1.21□□□□□ -2.22
PCDH9Q9HC56 AL133373.1-201ENST00000497098 94 ntBASIC1.21□□□□□ -2.22
PCDH9Q9HC56 SNORA31.2-201ENST00000516019 134 ntBASIC1.21□□□□□ -2.22
PCDH9Q9HC56 RNU7-70P-201ENST00000516941 66 ntBASIC1.21□□□□□ -2.22
PCDH9Q9HC56 MIR5197-201ENST00000583721 112 ntBASIC1.21□□□□□ -2.22
PCDH9Q9HC56 SENP7-201ENST00000314261 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC1.21□□□□□ -2.22
PCDH9Q9HC56 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC1.2□□□□□ -2.22
PCDH9Q9HC56 MIR302B-201ENST00000362188 73 ntBASIC1.2□□□□□ -2.22
PCDH9Q9HC56 MIR624-201ENST00000385217 97 ntBASIC1.2□□□□□ -2.22
PCDH9Q9HC56 AL035398.1-201ENST00000430869 322 ntBASIC1.2□□□□□ -2.22
PCDH9Q9HC56 RNU2-11P-201ENST00000459191 187 ntBASIC1.2□□□□□ -2.22
PCDH9Q9HC56 RNU6-1149P-201ENST00000516810 97 ntBASIC1.2□□□□□ -2.22
PCDH9Q9HC56 AC112693.2-201ENST00000556538 232 ntBASIC1.2□□□□□ -2.22
PCDH9Q9HC56 CLRN1-AS1.1-201ENST00000615643 79 ntBASIC1.2□□□□□ -2.22
PCDH9Q9HC56 Y_RNA.778-201ENST00000620203 90 ntBASIC1.2□□□□□ -2.22
PCDH9Q9HC56 AL596211.1-201ENST00000569873 2277 ntBASIC1.2□□□□□ -2.22
PCDH9Q9HC56 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC1.2□□□□□ -2.22
PCDH9Q9HC56 LRRIQ1-202ENST00000393217 5394 ntAPPRIS P1 TSL 1 (best) BASIC1.2□□□□□ -2.22
PCDH9Q9HC56 MTND5P32-201ENST00000560711 1802 ntBASIC1.19□□□□□ -2.22
PCDH9Q9HC56 RNY1P11-201ENST00000363759 113 ntBASIC1.19□□□□□ -2.22
PCDH9Q9HC56 SNORA70.7-201ENST00000384159 133 ntBASIC1.19□□□□□ -2.22
PCDH9Q9HC56 MIR618-201ENST00000385287 98 ntBASIC1.19□□□□□ -2.22
PCDH9Q9HC56 MIR548I3-201ENST00000408378 149 ntBASIC1.19□□□□□ -2.22
PCDH9Q9HC56 MIR548I1-201ENST00000408810 149 ntBASIC1.19□□□□□ -2.22
PCDH9Q9HC56 MIR3646-201ENST00000578301 84 ntBASIC1.19□□□□□ -2.22
PCDH9Q9HC56 MIR548AO-201ENST00000579992 96 ntBASIC1.19□□□□□ -2.22
PCDH9Q9HC56 DLEU2_5.2-201ENST00000610606 84 ntBASIC1.19□□□□□ -2.22
PCDH9Q9HC56 MIR6078-201ENST00000611069 100 ntBASIC1.19□□□□□ -2.22
PCDH9Q9HC56 SNORA24-201ENST00000384096 131 ntBASIC1.18□□□□□ -2.22
PCDH9Q9HC56 RNU6ATAC3P-201ENST00000387974 126 ntBASIC1.18□□□□□ -2.22
PCDH9Q9HC56 Y_RNA.580-201ENST00000391004 95 ntBASIC1.18□□□□□ -2.22
PCDH9Q9HC56 RNU6-1054P-201ENST00000411293 104 ntBASIC1.18□□□□□ -2.22
PCDH9Q9HC56 AC245047.7-201ENST00000440265 293 ntBASIC1.18□□□□□ -2.22
PCDH9Q9HC56 RNU7-96P-201ENST00000459535 64 ntBASIC1.18□□□□□ -2.22
PCDH9Q9HC56 RNU7-80P-201ENST00000459562 61 ntBASIC1.18□□□□□ -2.22
PCDH9Q9HC56 AC090155.2-201ENST00000518854 267 ntTSL 3 BASIC1.18□□□□□ -2.22
PCDH9Q9HC56 AP003716.2-201ENST00000528260 108 ntBASIC1.18□□□□□ -2.22
PCDH9Q9HC56 MIR4781-201ENST00000585250 76 ntBASIC1.18□□□□□ -2.22
PCDH9Q9HC56 MIR103A2-201ENST00000362154 78 ntBASIC1.17□□□□□ -2.22
PCDH9Q9HC56 RNA5SP327-201ENST00000362494 101 ntBASIC1.17□□□□□ -2.22
PCDH9Q9HC56 Y_RNA.52-201ENST00000362760 96 ntBASIC1.17□□□□□ -2.22
PCDH9Q9HC56 RNA5SP48-201ENST00000363969 126 ntBASIC1.17□□□□□ -2.22
PCDH9Q9HC56 Y_RNA.327-201ENST00000365201 102 ntBASIC1.17□□□□□ -2.22
PCDH9Q9HC56 Y_RNA.464-201ENST00000384282 110 ntBASIC1.17□□□□□ -2.22
PCDH9Q9HC56 Y_RNA.497-201ENST00000384447 98 ntBASIC1.17□□□□□ -2.22
PCDH9Q9HC56 RNU6-910P-201ENST00000390844 107 ntBASIC1.17□□□□□ -2.22
PCDH9Q9HC56 Y_RNA.584-201ENST00000391090 114 ntBASIC1.17□□□□□ -2.22
PCDH9Q9HC56 RNA5SP247-201ENST00000411181 105 ntBASIC1.17□□□□□ -2.22
PCDH9Q9HC56 RNU7-45P-201ENST00000459460 63 ntBASIC1.17□□□□□ -2.22
PCDH9Q9HC56 RNU6-998P-201ENST00000515894 101 ntBASIC1.17□□□□□ -2.22
PCDH9Q9HC56 SNORA25.12-201ENST00000516202 82 ntBASIC1.17□□□□□ -2.22
PCDH9Q9HC56 RNU7-53P-201ENST00000516705 60 ntBASIC1.17□□□□□ -2.22
PCDH9Q9HC56 RNU6-255P-201ENST00000516957 105 ntBASIC1.17□□□□□ -2.22
PCDH9Q9HC56 AC010177.1-201ENST00000547819 366 ntTSL 3 BASIC1.17□□□□□ -2.22
PCDH9Q9HC56 AC131055.1-201ENST00000584626 316 ntBASIC1.17□□□□□ -2.22
PCDH9Q9HC56 AL359821.1-201ENST00000605519 182 ntBASIC1.17□□□□□ -2.22
PCDH9Q9HC56 RNA5SP264-201ENST00000363115 107 ntBASIC1.16□□□□□ -2.22
PCDH9Q9HC56 Y_RNA.170-201ENST00000363746 110 ntBASIC1.16□□□□□ -2.22
PCDH9Q9HC56 RNU1-133P-201ENST00000364867 167 ntBASIC1.16□□□□□ -2.22
PCDH9Q9HC56 Y_RNA.330-201ENST00000365230 109 ntBASIC1.16□□□□□ -2.22
PCDH9Q9HC56 Y_RNA.363-201ENST00000365529 113 ntBASIC1.16□□□□□ -2.22
PCDH9Q9HC56 RNU6-913P-201ENST00000390913 95 ntBASIC1.16□□□□□ -2.22
PCDH9Q9HC56 MIR513C-201ENST00000401352 84 ntBASIC1.16□□□□□ -2.22
PCDH9Q9HC56 MIR1302-7-201ENST00000408841 72 ntBASIC1.16□□□□□ -2.22
PCDH9Q9HC56 snoU13.16-201ENST00000459350 104 ntBASIC1.16□□□□□ -2.22
PCDH9Q9HC56 TRMT112P2-201ENST00000512910 132 ntBASIC1.16□□□□□ -2.22
PCDH9Q9HC56 RNU5E-3P-201ENST00000515913 68 ntBASIC1.16□□□□□ -2.22
PCDH9Q9HC56 SCARNA15-202ENST00000516881 127 ntBASIC1.16□□□□□ -2.22
PCDH9Q9HC56 AC091932.4-201ENST00000623386 200 ntBASIC1.16□□□□□ -2.22
PCDH9Q9HC56 LEKR1-212ENST00000640869 237 ntTSL 5 BASIC1.16□□□□□ -2.22
PCDH9Q9HC56 PPP1R3A-201ENST00000284601 4384 ntAPPRIS P1 TSL 1 (best) BASIC1.15□□□□□ -2.22
PCDH9Q9HC56 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC1.15□□□□□ -2.23
PCDH9Q9HC56 RNY1P10-201ENST00000363268 113 ntBASIC1.15□□□□□ -2.23
PCDH9Q9HC56 SNORD18B-201ENST00000365659 72 ntBASIC1.15□□□□□ -2.23
PCDH9Q9HC56 Y_RNA.454-201ENST00000384224 113 ntBASIC1.15□□□□□ -2.23
PCDH9Q9HC56 SNORA20-201ENST00000384662 132 ntBASIC1.15□□□□□ -2.23
PCDH9Q9HC56 MIR222-201ENST00000384992 110 ntBASIC1.15□□□□□ -2.23
PCDH9Q9HC56 RNU6-321P-201ENST00000410912 106 ntBASIC1.15□□□□□ -2.23
PCDH9Q9HC56 HMGN1P33-201ENST00000432945 451 ntBASIC1.15□□□□□ -2.23
PCDH9Q9HC56 SNORA31.4-201ENST00000516049 129 ntBASIC1.15□□□□□ -2.23
PCDH9Q9HC56 RNA5SP272-201ENST00000516095 111 ntBASIC1.15□□□□□ -2.23
PCDH9Q9HC56 RNU6-346P-201ENST00000516288 111 ntBASIC1.15□□□□□ -2.23
PCDH9Q9HC56 SNORA70.22-201ENST00000517160 124 ntBASIC1.15□□□□□ -2.23
PCDH9Q9HC56 AC024382.1-201ENST00000520224 292 ntTSL 3 BASIC1.15□□□□□ -2.23
PCDH9Q9HC56 HSPE1P19-201ENST00000603327 295 ntBASIC1.15□□□□□ -2.23
PCDH9Q9HC56 ZNF518A-210ENST00000624776 7994 ntAPPRIS P1 TSL 1 (best) BASIC1.15□□□□□ -2.23
PCDH9Q9HC56 AC108866.1-201ENST00000503073 2339 ntTSL 5 BASIC1.14□□□□□ -2.23
PCDH9Q9HC56 Y_RNA.215-201ENST00000364204 112 ntBASIC1.14□□□□□ -2.23
PCDH9Q9HC56 Y_RNA.400-201ENST00000383963 111 ntBASIC1.14□□□□□ -2.23
PCDH9Q9HC56 RNU6-460P-201ENST00000391158 108 ntBASIC1.14□□□□□ -2.23
PCDH9Q9HC56 MIR1185-1-201ENST00000408598 86 ntBASIC1.14□□□□□ -2.23
PCDH9Q9HC56 RNU6-1190P-201ENST00000410811 104 ntBASIC1.14□□□□□ -2.23
PCDH9Q9HC56 RPS29P28-201ENST00000446439 141 ntBASIC1.14□□□□□ -2.23
PCDH9Q9HC56 OR2A41P-201ENST00000473586 105 ntBASIC1.14□□□□□ -2.23
PCDH9Q9HC56 PRELID3BP2-201ENST00000605362 201 ntBASIC1.14□□□□□ -2.23
PCDH9Q9HC56 IL6ST-203ENST00000381287 8667 ntTSL 5 BASIC1.14□□□□□ -2.23
PCDH9Q9HC56 RNU6-508P-201ENST00000363231 103 ntBASIC1.13□□□□□ -2.23
PCDH9Q9HC56 RNU6ATAC8P-201ENST00000408460 126 ntBASIC1.13□□□□□ -2.23
PCDH9Q9HC56 AC090844.1-201ENST00000422019 156 ntBASIC1.13□□□□□ -2.23
PCDH9Q9HC56 DIP2A-IT1-201ENST00000442434 428 ntTSL 2 BASIC1.13□□□□□ -2.23
Retrieved 100 of 98,524 protein–RNA pairs in 176.1 ms