Protein–RNA interactions for Protein: Q9H1J1

UPF3A, Regulator of nonsense transcripts 3A, humanhuman

Known RBP Predictions only

Length 476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3AQ9H1J1 RNU6-322P-201ENST00000516010 103 ntBASIC1.1□□□□□ -2.23
UPF3AQ9H1J1 RNA5SP436-201ENST00000516020 115 ntBASIC1.1□□□□□ -2.23
UPF3AQ9H1J1 SNORD111.1-201ENST00000516421 86 ntBASIC1.1□□□□□ -2.23
UPF3AQ9H1J1 SNORA18.4-201ENST00000516440 124 ntBASIC1.1□□□□□ -2.23
UPF3AQ9H1J1 SNORD116-25-201ENST00000516517 92 ntBASIC1.1□□□□□ -2.23
UPF3AQ9H1J1 AC104465.1-201ENST00000611365 139 ntBASIC1.1□□□□□ -2.23
UPF3AQ9H1J1 MIR6779-201ENST00000617283 64 ntBASIC1.1□□□□□ -2.23
UPF3AQ9H1J1 FAS-AS1.2-201ENST00000620386 170 ntBASIC1.1□□□□□ -2.23
UPF3AQ9H1J1 LINC01068-202ENST00000620874 626 ntTSL 3 BASIC1.1□□□□□ -2.23
UPF3AQ9H1J1 SLC8A1-AS1-230ENST00000627538 212 ntTSL 5 BASIC1.1□□□□□ -2.23
UPF3AQ9H1J1 MGAT4C-209ENST00000611864 25116 ntAPPRIS P1 TSL 5 BASIC1.1□□□□□ -2.23
UPF3AQ9H1J1 ZNF732-201ENST00000419098 2193 ntAPPRIS P2 TSL 2 BASIC1.1□□□□□ -2.23
UPF3AQ9H1J1 RNU6-597P-201ENST00000365620 102 ntBASIC1.09□□□□□ -2.23
UPF3AQ9H1J1 Y_RNA.393-201ENST00000383936 102 ntBASIC1.09□□□□□ -2.23
UPF3AQ9H1J1 MIR1302-7-201ENST00000408841 72 ntBASIC1.09□□□□□ -2.23
UPF3AQ9H1J1 AC107027.2-201ENST00000512197 115 ntBASIC1.09□□□□□ -2.23
UPF3AQ9H1J1 MTND5P41-201ENST00000517498 206 ntBASIC1.09□□□□□ -2.23
UPF3AQ9H1J1 AP003484.1-201ENST00000530974 250 ntBASIC1.09□□□□□ -2.23
UPF3AQ9H1J1 CYP3A137P-201ENST00000562436 69 ntBASIC1.09□□□□□ -2.23
UPF3AQ9H1J1 CLRN1-AS1.1-201ENST00000615643 79 ntBASIC1.09□□□□□ -2.23
UPF3AQ9H1J1 AC134878.1-201ENST00000619901 243 ntBASIC1.09□□□□□ -2.23
UPF3AQ9H1J1 Y_RNA.36-201ENST00000362602 112 ntBASIC1.08□□□□□ -2.24
UPF3AQ9H1J1 Y_RNA.363-201ENST00000365529 113 ntBASIC1.08□□□□□ -2.24
UPF3AQ9H1J1 RNU6-1292P-201ENST00000383856 107 ntBASIC1.08□□□□□ -2.24
UPF3AQ9H1J1 SNORA24-201ENST00000384096 131 ntBASIC1.08□□□□□ -2.24
UPF3AQ9H1J1 Y_RNA.440-201ENST00000384120 114 ntBASIC1.08□□□□□ -2.24
UPF3AQ9H1J1 RNU6-1065P-201ENST00000384513 106 ntBASIC1.08□□□□□ -2.24
UPF3AQ9H1J1 Y_RNA.542-201ENST00000384641 111 ntBASIC1.08□□□□□ -2.24
UPF3AQ9H1J1 MIR520C-201ENST00000385005 87 ntBASIC1.08□□□□□ -2.24
UPF3AQ9H1J1 TRAJ2-201ENST00000390535 66 ntAPPRIS P1 BASIC1.08□□□□□ -2.24
UPF3AQ9H1J1 AL365434.1-201ENST00000412362 380 ntTSL 3 BASIC1.08□□□□□ -2.24
UPF3AQ9H1J1 RNU7-43P-201ENST00000516554 64 ntBASIC1.08□□□□□ -2.24
UPF3AQ9H1J1 SCARNA15-202ENST00000516881 127 ntBASIC1.08□□□□□ -2.24
UPF3AQ9H1J1 RNU6-255P-201ENST00000516957 105 ntBASIC1.08□□□□□ -2.24
UPF3AQ9H1J1 AP003716.2-201ENST00000528260 108 ntBASIC1.08□□□□□ -2.24
UPF3AQ9H1J1 AC008133.2-201ENST00000624540 351 ntBASIC1.08□□□□□ -2.24
UPF3AQ9H1J1 AC021753.1-201ENST00000635724 168 ntBASIC1.08□□□□□ -2.24
UPF3AQ9H1J1 CXADR-202ENST00000356275 270 ntTSL 1 (best) BASIC1.07□□□□□ -2.24
UPF3AQ9H1J1 Y_RNA.370-201ENST00000365589 108 ntBASIC1.07□□□□□ -2.24
UPF3AQ9H1J1 Y_RNA.398-201ENST00000383952 99 ntBASIC1.07□□□□□ -2.24
UPF3AQ9H1J1 Y_RNA.580-201ENST00000391004 95 ntBASIC1.07□□□□□ -2.24
UPF3AQ9H1J1 AL138808.1-201ENST00000441428 371 ntTSL 2 BASIC1.07□□□□□ -2.24
UPF3AQ9H1J1 AC087499.4-201ENST00000448505 178 ntBASIC1.07□□□□□ -2.24
UPF3AQ9H1J1 RPL30P7-201ENST00000479312 323 ntBASIC1.07□□□□□ -2.24
UPF3AQ9H1J1 RNU6-947P-201ENST00000516264 106 ntBASIC1.07□□□□□ -2.24
UPF3AQ9H1J1 MIR3144-201ENST00000579460 79 ntBASIC1.07□□□□□ -2.24
UPF3AQ9H1J1 MIR5197-201ENST00000583721 112 ntBASIC1.07□□□□□ -2.24
UPF3AQ9H1J1 MIR4791-201ENST00000607666 84 ntBASIC1.07□□□□□ -2.24
UPF3AQ9H1J1 MTND5P32-201ENST00000560711 1802 ntBASIC1.06□□□□□ -2.24
UPF3AQ9H1J1 SNORD115-34-201ENST00000362441 82 ntBASIC1.06□□□□□ -2.24
UPF3AQ9H1J1 SNORD115-12-201ENST00000362583 82 ntBASIC1.06□□□□□ -2.24
UPF3AQ9H1J1 SNORD115-29-201ENST00000362834 82 ntBASIC1.06□□□□□ -2.24
UPF3AQ9H1J1 SNORD115-9-201ENST00000362912 82 ntBASIC1.06□□□□□ -2.24
UPF3AQ9H1J1 SNORD115-21-201ENST00000362963 81 ntBASIC1.06□□□□□ -2.24
UPF3AQ9H1J1 SNORD115-14-201ENST00000363090 81 ntBASIC1.06□□□□□ -2.24
UPF3AQ9H1J1 SNORD115-13-201ENST00000363358 82 ntBASIC1.06□□□□□ -2.24
UPF3AQ9H1J1 SNORD115-41-201ENST00000363608 82 ntBASIC1.06□□□□□ -2.24
UPF3AQ9H1J1 SNORD115-11-201ENST00000363616 82 ntBASIC1.06□□□□□ -2.24
UPF3AQ9H1J1 SNORD115-5-201ENST00000363633 82 ntBASIC1.06□□□□□ -2.24
UPF3AQ9H1J1 SNORD115-39-201ENST00000363694 82 ntBASIC1.06□□□□□ -2.24
UPF3AQ9H1J1 SNORD115-4-201ENST00000363810 82 ntBASIC1.06□□□□□ -2.24
UPF3AQ9H1J1 SNORD115-16-201ENST00000363887 82 ntBASIC1.06□□□□□ -2.24
UPF3AQ9H1J1 SNORD115-6-201ENST00000363942 82 ntBASIC1.06□□□□□ -2.24
UPF3AQ9H1J1 SNORD115-42-201ENST00000364273 82 ntBASIC1.06□□□□□ -2.24
UPF3AQ9H1J1 Y_RNA.241-201ENST00000364470 117 ntBASIC1.06□□□□□ -2.24
UPF3AQ9H1J1 SNORD115-15-201ENST00000364809 81 ntBASIC1.06□□□□□ -2.24
UPF3AQ9H1J1 SNORD115-1-201ENST00000364961 82 ntBASIC1.06□□□□□ -2.24
UPF3AQ9H1J1 SNORD115-26-201ENST00000365067 82 ntBASIC1.06□□□□□ -2.24
UPF3AQ9H1J1 SNORD115-10-201ENST00000365073 81 ntBASIC1.06□□□□□ -2.24
UPF3AQ9H1J1 Y_RNA.337-201ENST00000365312 102 ntBASIC1.06□□□□□ -2.24
UPF3AQ9H1J1 Y_RNA.357-201ENST00000365487 109 ntBASIC1.06□□□□□ -2.24
UPF3AQ9H1J1 SNORD115-43-201ENST00000365503 82 ntBASIC1.06□□□□□ -2.24
UPF3AQ9H1J1 SNORD115-36-201ENST00000365629 82 ntBASIC1.06□□□□□ -2.24
UPF3AQ9H1J1 Y_RNA.521-201ENST00000384560 114 ntBASIC1.06□□□□□ -2.24
UPF3AQ9H1J1 MIR624-201ENST00000385217 97 ntBASIC1.06□□□□□ -2.24
UPF3AQ9H1J1 TRAJ22-201ENST00000390515 63 ntAPPRIS P1 BASIC1.06□□□□□ -2.24
UPF3AQ9H1J1 SNORA40.5-201ENST00000391061 128 ntBASIC1.06□□□□□ -2.24
UPF3AQ9H1J1 RNU6-588P-201ENST00000410281 105 ntBASIC1.06□□□□□ -2.24
UPF3AQ9H1J1 OR2A41P-201ENST00000473586 105 ntBASIC1.06□□□□□ -2.24
UPF3AQ9H1J1 AC048334.1-201ENST00000477975 159 ntBASIC1.06□□□□□ -2.24
UPF3AQ9H1J1 RN7SKP88-201ENST00000516847 250 ntBASIC1.06□□□□□ -2.24
UPF3AQ9H1J1 RNU6-1212P-201ENST00000517023 104 ntBASIC1.06□□□□□ -2.24
UPF3AQ9H1J1 RNU2-60P-201ENST00000517290 128 ntBASIC1.06□□□□□ -2.24
UPF3AQ9H1J1 SNORD115-40-201ENST00000606510 82 ntBASIC1.06□□□□□ -2.24
UPF3AQ9H1J1 7SK.8-201ENST00000612110 250 ntBASIC1.06□□□□□ -2.24
UPF3AQ9H1J1 7SK.11-201ENST00000615477 250 ntBASIC1.06□□□□□ -2.24
UPF3AQ9H1J1 7SK.13-201ENST00000622040 250 ntBASIC1.06□□□□□ -2.24
UPF3AQ9H1J1 CCDC68-202ENST00000432185 4014 ntAPPRIS P1 TSL 1 (best) BASIC1.05□□□□□ -2.24
UPF3AQ9H1J1 Y_RNA.8-201ENST00000362353 102 ntBASIC1.05□□□□□ -2.24
UPF3AQ9H1J1 SNORA25.3-201ENST00000363205 127 ntBASIC1.05□□□□□ -2.24
UPF3AQ9H1J1 RNU1-133P-201ENST00000364867 167 ntBASIC1.05□□□□□ -2.24
UPF3AQ9H1J1 RNU6-1189P-201ENST00000383958 107 ntBASIC1.05□□□□□ -2.24
UPF3AQ9H1J1 Y_RNA.410-201ENST00000383992 113 ntBASIC1.05□□□□□ -2.24
UPF3AQ9H1J1 RNU6-209P-201ENST00000384118 107 ntBASIC1.05□□□□□ -2.24
UPF3AQ9H1J1 SNORA27-201ENST00000384323 126 ntBASIC1.05□□□□□ -2.24
UPF3AQ9H1J1 Y_RNA.537-201ENST00000384626 109 ntBASIC1.05□□□□□ -2.24
UPF3AQ9H1J1 MIR1185-1-201ENST00000408598 86 ntBASIC1.05□□□□□ -2.24
UPF3AQ9H1J1 RNU6-1054P-201ENST00000411293 104 ntBASIC1.05□□□□□ -2.24
UPF3AQ9H1J1 IGHVIII-67-2-201ENST00000519849 88 ntBASIC1.05□□□□□ -2.24
UPF3AQ9H1J1 MIR548AO-201ENST00000579992 96 ntBASIC1.05□□□□□ -2.24
Retrieved 100 of 98,524 protein–RNA pairs in 158.6 ms