Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 RNU7-96P-201ENST00000459535 64 ntBASIC1.38□□□□□ -2.19
PAAF1Q9BRP4 AC048334.1-201ENST00000477975 159 ntBASIC1.38□□□□□ -2.19
PAAF1Q9BRP4 RNU4ATAC11P-201ENST00000515939 126 ntBASIC1.38□□□□□ -2.19
PAAF1Q9BRP4 SNORA31.2-201ENST00000516019 134 ntBASIC1.38□□□□□ -2.19
PAAF1Q9BRP4 SNORA31.4-201ENST00000516049 129 ntBASIC1.38□□□□□ -2.19
PAAF1Q9BRP4 MIR3144-201ENST00000579460 79 ntBASIC1.38□□□□□ -2.19
PAAF1Q9BRP4 Y_RNA.454-201ENST00000384224 113 ntBASIC1.37□□□□□ -2.19
PAAF1Q9BRP4 MT-TR-201ENST00000387439 65 ntBASIC1.37□□□□□ -2.19
PAAF1Q9BRP4 RNU6-394P-201ENST00000410735 107 ntBASIC1.37□□□□□ -2.19
PAAF1Q9BRP4 RNU2-11P-201ENST00000459191 187 ntBASIC1.37□□□□□ -2.19
PAAF1Q9BRP4 AC068338.1-201ENST00000565567 176 ntBASIC1.37□□□□□ -2.19
PAAF1Q9BRP4 MTND1P7-201ENST00000632801 297 ntBASIC1.37□□□□□ -2.19
PAAF1Q9BRP4 AL596211.1-201ENST00000569873 2277 ntBASIC1.36□□□□□ -2.19
PAAF1Q9BRP4 MIR103A2-201ENST00000362154 78 ntBASIC1.36□□□□□ -2.19
PAAF1Q9BRP4 RNU4-11P-201ENST00000365287 132 ntBASIC1.36□□□□□ -2.19
PAAF1Q9BRP4 RNU6-1130P-201ENST00000365434 107 ntBASIC1.36□□□□□ -2.19
PAAF1Q9BRP4 Y_RNA.398-201ENST00000383952 99 ntBASIC1.36□□□□□ -2.19
PAAF1Q9BRP4 MIR222-201ENST00000384992 110 ntBASIC1.36□□□□□ -2.19
PAAF1Q9BRP4 MIR513C-201ENST00000401352 84 ntBASIC1.36□□□□□ -2.19
PAAF1Q9BRP4 AC245047.7-201ENST00000440265 293 ntBASIC1.36□□□□□ -2.19
PAAF1Q9BRP4 snoU13.16-201ENST00000459350 104 ntBASIC1.36□□□□□ -2.19
PAAF1Q9BRP4 RNU2-13P-201ENST00000515909 113 ntBASIC1.36□□□□□ -2.19
PAAF1Q9BRP4 RNA5SP102-201ENST00000516865 106 ntBASIC1.36□□□□□ -2.19
PAAF1Q9BRP4 AC090155.2-201ENST00000518854 267 ntTSL 3 BASIC1.36□□□□□ -2.19
PAAF1Q9BRP4 AC024382.1-201ENST00000520224 292 ntTSL 3 BASIC1.36□□□□□ -2.19
PAAF1Q9BRP4 AC112693.2-201ENST00000556538 232 ntBASIC1.36□□□□□ -2.19
PAAF1Q9BRP4 Y_RNA.778-201ENST00000620203 90 ntBASIC1.36□□□□□ -2.19
PAAF1Q9BRP4 MIR376A2-201ENST00000636782 80 ntBASIC1.36□□□□□ -2.19
PAAF1Q9BRP4 SENP7-207ENST00000394095 4945 ntAPPRIS P3 TSL 1 (best) BASIC1.36□□□□□ -2.19
PAAF1Q9BRP4 RNU1-133P-201ENST00000364867 167 ntBASIC1.35□□□□□ -2.19
PAAF1Q9BRP4 SNORD18B-201ENST00000365659 72 ntBASIC1.35□□□□□ -2.19
PAAF1Q9BRP4 RNU6-998P-201ENST00000515894 101 ntBASIC1.35□□□□□ -2.19
PAAF1Q9BRP4 RNU6-1149P-201ENST00000516810 97 ntBASIC1.35□□□□□ -2.19
PAAF1Q9BRP4 AC010177.1-201ENST00000547819 366 ntTSL 3 BASIC1.35□□□□□ -2.19
PAAF1Q9BRP4 AC131055.1-201ENST00000584626 316 ntBASIC1.35□□□□□ -2.19
PAAF1Q9BRP4 MIR6078-201ENST00000611069 100 ntBASIC1.35□□□□□ -2.19
PAAF1Q9BRP4 JMJD1C-212ENST00000639129 7901 ntAPPRIS ALT2 TSL 5 BASIC1.35□□□□□ -2.19
PAAF1Q9BRP4 MTND5P32-201ENST00000560711 1802 ntBASIC1.34□□□□□ -2.19
PAAF1Q9BRP4 MIR96-201ENST00000362288 78 ntBASIC1.34□□□□□ -2.19
PAAF1Q9BRP4 RNA5SP264-201ENST00000363115 107 ntBASIC1.34□□□□□ -2.19
PAAF1Q9BRP4 Y_RNA.464-201ENST00000384282 110 ntBASIC1.34□□□□□ -2.19
PAAF1Q9BRP4 Y_RNA.580-201ENST00000391004 95 ntBASIC1.34□□□□□ -2.19
PAAF1Q9BRP4 RNU6-1054P-201ENST00000411293 104 ntBASIC1.34□□□□□ -2.19
PAAF1Q9BRP4 AC021753.1-201ENST00000635724 168 ntBASIC1.34□□□□□ -2.19
PAAF1Q9BRP4 SNORA24-201ENST00000384096 131 ntBASIC1.33□□□□□ -2.2
PAAF1Q9BRP4 MIR758-201ENST00000390227 88 ntBASIC1.33□□□□□ -2.2
PAAF1Q9BRP4 RNU6-910P-201ENST00000390844 107 ntBASIC1.33□□□□□ -2.2
PAAF1Q9BRP4 Y_RNA.584-201ENST00000391090 114 ntBASIC1.33□□□□□ -2.2
PAAF1Q9BRP4 SNORA70.22-201ENST00000517160 124 ntBASIC1.33□□□□□ -2.2
PAAF1Q9BRP4 MIR548AO-201ENST00000579992 96 ntBASIC1.33□□□□□ -2.2
PAAF1Q9BRP4 AC079466.2-201ENST00000585394 185 ntTSL 5 BASIC1.33□□□□□ -2.2
PAAF1Q9BRP4 ABCA5-201ENST00000392676 8220 ntAPPRIS P1 TSL 1 (best) BASIC1.32□□□□□ -2.2
PAAF1Q9BRP4 Y_RNA.52-201ENST00000362760 96 ntBASIC1.32□□□□□ -2.2
PAAF1Q9BRP4 MIR548I3-201ENST00000408378 149 ntBASIC1.32□□□□□ -2.2
PAAF1Q9BRP4 RNU6-955P-201ENST00000410497 104 ntBASIC1.32□□□□□ -2.2
PAAF1Q9BRP4 MTATP6P21-201ENST00000440681 189 ntBASIC1.32□□□□□ -2.2
PAAF1Q9BRP4 AC091932.4-201ENST00000623386 200 ntBASIC1.32□□□□□ -2.2
PAAF1Q9BRP4 LEKR1-212ENST00000640869 237 ntTSL 5 BASIC1.32□□□□□ -2.2
PAAF1Q9BRP4 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC1.31□□□□□ -2.2
PAAF1Q9BRP4 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC1.31□□□□□ -2.2
PAAF1Q9BRP4 RNA5SP327-201ENST00000362494 101 ntBASIC1.31□□□□□ -2.2
PAAF1Q9BRP4 Y_RNA.330-201ENST00000365230 109 ntBASIC1.31□□□□□ -2.2
PAAF1Q9BRP4 Y_RNA.497-201ENST00000384447 98 ntBASIC1.31□□□□□ -2.2
PAAF1Q9BRP4 DIP2A-IT1-201ENST00000442434 428 ntTSL 2 BASIC1.31□□□□□ -2.2
PAAF1Q9BRP4 RPS29P23-201ENST00000458635 123 ntBASIC1.31□□□□□ -2.2
PAAF1Q9BRP4 RNU7-73P-201ENST00000458743 63 ntBASIC1.31□□□□□ -2.2
PAAF1Q9BRP4 snoU13.25-201ENST00000458945 104 ntBASIC1.31□□□□□ -2.2
PAAF1Q9BRP4 MIR6504-201ENST00000613520 61 ntBASIC1.31□□□□□ -2.2
PAAF1Q9BRP4 EYS-205ENST00000393380 5450 ntTSL 1 (best) BASIC1.3□□□□□ -2.2
PAAF1Q9BRP4 SNORD114-27-201ENST00000363766 70 ntBASIC1.3□□□□□ -2.2
PAAF1Q9BRP4 SNORA1.1-201ENST00000364671 133 ntBASIC1.3□□□□□ -2.2
PAAF1Q9BRP4 RNU6-396P-201ENST00000365369 105 ntBASIC1.3□□□□□ -2.2
PAAF1Q9BRP4 MIR548I1-201ENST00000408810 149 ntBASIC1.3□□□□□ -2.2
PAAF1Q9BRP4 AL591704.2-201ENST00000421658 181 ntBASIC1.3□□□□□ -2.2
PAAF1Q9BRP4 SNORA25.12-201ENST00000516202 82 ntBASIC1.3□□□□□ -2.2
PAAF1Q9BRP4 AC019288.1-201ENST00000557918 224 ntBASIC1.3□□□□□ -2.2
PAAF1Q9BRP4 ZFAT-AS1_2.1-201ENST00000613742 201 ntBASIC1.3□□□□□ -2.2
PAAF1Q9BRP4 MIR26B-201ENST00000362251 77 ntBASIC1.29□□□□□ -2.2
PAAF1Q9BRP4 SNORA25.8-201ENST00000364831 128 ntBASIC1.29□□□□□ -2.2
PAAF1Q9BRP4 Y_RNA.400-201ENST00000383963 111 ntBASIC1.29□□□□□ -2.2
PAAF1Q9BRP4 SNORA20-201ENST00000384662 132 ntBASIC1.29□□□□□ -2.2
PAAF1Q9BRP4 RNU6-913P-201ENST00000390913 95 ntBASIC1.29□□□□□ -2.2
PAAF1Q9BRP4 RNA5SP261-201ENST00000410536 106 ntBASIC1.29□□□□□ -2.2
PAAF1Q9BRP4 SCARNA15-202ENST00000516881 127 ntBASIC1.29□□□□□ -2.2
PAAF1Q9BRP4 RNU11-2P-201ENST00000516898 142 ntBASIC1.29□□□□□ -2.2
PAAF1Q9BRP4 MTND5P41-201ENST00000517498 206 ntBASIC1.29□□□□□ -2.2
PAAF1Q9BRP4 MIR548X2-201ENST00000579776 100 ntBASIC1.29□□□□□ -2.2
PAAF1Q9BRP4 MIR3152-201ENST00000579801 74 ntBASIC1.29□□□□□ -2.2
PAAF1Q9BRP4 PRELID3BP2-201ENST00000605362 201 ntBASIC1.29□□□□□ -2.2
PAAF1Q9BRP4 Y_RNA.170-201ENST00000363746 110 ntBASIC1.28□□□□□ -2.2
PAAF1Q9BRP4 SNORA25-201ENST00000384384 134 ntBASIC1.28□□□□□ -2.2
PAAF1Q9BRP4 SNORA80D-201ENST00000384488 135 ntBASIC1.28□□□□□ -2.2
PAAF1Q9BRP4 MRPL35P3-201ENST00000421557 364 ntBASIC1.28□□□□□ -2.2
PAAF1Q9BRP4 RNU5E-3P-201ENST00000515913 68 ntBASIC1.28□□□□□ -2.2
PAAF1Q9BRP4 MIR2115-201ENST00000516657 100 ntBASIC1.28□□□□□ -2.2
PAAF1Q9BRP4 IGLVVI-22-1-201ENST00000521183 211 ntBASIC1.28□□□□□ -2.2
PAAF1Q9BRP4 AL022345.2-201ENST00000606307 135 ntBASIC1.28□□□□□ -2.2
PAAF1Q9BRP4 CLRN1-AS1.1-201ENST00000615643 79 ntBASIC1.28□□□□□ -2.2
PAAF1Q9BRP4 Y_RNA.215-201ENST00000364204 112 ntBASIC1.27□□□□□ -2.21
PAAF1Q9BRP4 SNORD114-22-201ENST00000365423 72 ntBASIC1.27□□□□□ -2.21
Retrieved 100 of 98,524 protein–RNA pairs in 214.5 ms