| CNRIP1 | Q96F85 | RNU7-53P-201 | ENST00000516705 | 60 nt | BASIC | 0.91 | □□□□□ -2.26 | | |
| CNRIP1 | Q96F85 | SNORA81.3-201 | ENST00000517283 | 198 nt | BASIC | 0.91 | □□□□□ -2.26 | | |
| CNRIP1 | Q96F85 | AC009093.3-203 | ENST00000565800 | 121 nt | TSL 2 BASIC | 0.91 | □□□□□ -2.26 | | |
| CNRIP1 | Q96F85 | AC103810.9-201 | ENST00000606688 | 112 nt | BASIC | 0.91 | □□□□□ -2.26 | | |
| CNRIP1 | Q96F85 | MIR6516-201 | ENST00000630554 | 81 nt | BASIC | 0.91 | □□□□□ -2.26 | | |
| CNRIP1 | Q96F85 | Y_RNA.338-201 | ENST00000365320 | 114 nt | BASIC | 0.9 | □□□□□ -2.27 | | |
| CNRIP1 | Q96F85 | RNU6-939P-201 | ENST00000384634 | 107 nt | BASIC | 0.9 | □□□□□ -2.27 | | |
| CNRIP1 | Q96F85 | RNA5SP127-201 | ENST00000411051 | 133 nt | BASIC | 0.9 | □□□□□ -2.27 | | |
| CNRIP1 | Q96F85 | AC006461.1-201 | ENST00000412637 | 326 nt | BASIC | 0.9 | □□□□□ -2.27 | | |
| CNRIP1 | Q96F85 | AL035398.1-201 | ENST00000430869 | 322 nt | BASIC | 0.9 | □□□□□ -2.27 | | |
| CNRIP1 | Q96F85 | AC111194.2-201 | ENST00000511222 | 455 nt | TSL 5 BASIC | 0.9 | □□□□□ -2.27 | | |
| CNRIP1 | Q96F85 | MIR2115-201 | ENST00000516657 | 100 nt | BASIC | 0.9 | □□□□□ -2.27 | | |
| CNRIP1 | Q96F85 | RNU6-958P-201 | ENST00000516995 | 106 nt | BASIC | 0.9 | □□□□□ -2.27 | | |
| CNRIP1 | Q96F85 | MIR8055-201 | ENST00000610739 | 97 nt | BASIC | 0.9 | □□□□□ -2.27 | | |
| CNRIP1 | Q96F85 | RNU6-682P-201 | ENST00000363843 | 106 nt | BASIC | 0.89 | □□□□□ -2.27 | | |
| CNRIP1 | Q96F85 | RNU6-396P-201 | ENST00000365369 | 105 nt | BASIC | 0.89 | □□□□□ -2.27 | | |
| CNRIP1 | Q96F85 | MT-TN-201 | ENST00000387400 | 73 nt | BASIC | 0.89 | □□□□□ -2.27 | | |
| CNRIP1 | Q96F85 | RNU6-913P-201 | ENST00000390913 | 95 nt | BASIC | 0.89 | □□□□□ -2.27 | | |
| CNRIP1 | Q96F85 | SEPT7P4-201 | ENST00000437076 | 306 nt | BASIC | 0.89 | □□□□□ -2.27 | | |
| CNRIP1 | Q96F85 | OR2A41P-201 | ENST00000473586 | 105 nt | BASIC | 0.89 | □□□□□ -2.27 | | |
| CNRIP1 | Q96F85 | AC107027.2-201 | ENST00000512197 | 115 nt | BASIC | 0.89 | □□□□□ -2.27 | | |
| CNRIP1 | Q96F85 | RNU6-794P-201 | ENST00000517261 | 64 nt | BASIC | 0.89 | □□□□□ -2.27 | | |
| CNRIP1 | Q96F85 | AC090155.2-201 | ENST00000518854 | 267 nt | TSL 3 BASIC | 0.89 | □□□□□ -2.27 | | |
| CNRIP1 | Q96F85 | AC004792.1-201 | ENST00000614523 | 137 nt | BASIC | 0.89 | □□□□□ -2.27 | | |
| CNRIP1 | Q96F85 | AC008163.1-202 | ENST00000636004 | 2889 nt | BASIC | 0.89 | □□□□□ -2.27 | | |
| CNRIP1 | Q96F85 | RNU4-84P-201 | ENST00000364200 | 139 nt | BASIC | 0.88 | □□□□□ -2.27 | | |
| CNRIP1 | Q96F85 | SNORA25.7-201 | ENST00000364375 | 127 nt | BASIC | 0.88 | □□□□□ -2.27 | | |
| CNRIP1 | Q96F85 | Y_RNA.393-201 | ENST00000383936 | 102 nt | BASIC | 0.88 | □□□□□ -2.27 | | |
| CNRIP1 | Q96F85 | Y_RNA.441-201 | ENST00000384123 | 112 nt | BASIC | 0.88 | □□□□□ -2.27 | | |
| CNRIP1 | Q96F85 | RNU7-40P-201 | ENST00000516397 | 64 nt | BASIC | 0.88 | □□□□□ -2.27 | | |
| CNRIP1 | Q96F85 | RNU7-121P-201 | ENST00000516604 | 62 nt | BASIC | 0.88 | □□□□□ -2.27 | | |
| CNRIP1 | Q96F85 | AL020996.3-201 | ENST00000606617 | 222 nt | BASIC | 0.88 | □□□□□ -2.27 | | |
| CNRIP1 | Q96F85 | Z97988.1-201 | ENST00000637697 | 135 nt | BASIC | 0.88 | □□□□□ -2.27 | | |
| CNRIP1 | Q96F85 | HIF1A-204 | ENST00000539097 | 3956 nt | TSL 1 (best) BASIC | 0.88 | □□□□□ -2.27 | | |
| CNRIP1 | Q96F85 | ZNF260-205 | ENST00000593142 | 4047 nt | APPRIS P1 TSL 1 (best) BASIC | 0.87 | □□□□□ -2.27 | | |
| CNRIP1 | Q96F85 | EYS-205 | ENST00000393380 | 5450 nt | TSL 1 (best) BASIC | 0.87 | □□□□□ -2.27 | | |
| CNRIP1 | Q96F85 | MIR377-201 | ENST00000362145 | 69 nt | BASIC | 0.87 | □□□□□ -2.27 | | |
| CNRIP1 | Q96F85 | RNU6-1318P-201 | ENST00000365389 | 103 nt | BASIC | 0.87 | □□□□□ -2.27 | | |
| CNRIP1 | Q96F85 | RNU5E-9P-201 | ENST00000411164 | 104 nt | BASIC | 0.87 | □□□□□ -2.27 | | |
| CNRIP1 | Q96F85 | MRPL35P3-201 | ENST00000421557 | 364 nt | BASIC | 0.87 | □□□□□ -2.27 | | |
| CNRIP1 | Q96F85 | RNU2-11P-201 | ENST00000459191 | 187 nt | BASIC | 0.87 | □□□□□ -2.27 | | |
| CNRIP1 | Q96F85 | RNU7-80P-201 | ENST00000459562 | 61 nt | BASIC | 0.87 | □□□□□ -2.27 | | |
| CNRIP1 | Q96F85 | RNU6-1053P-201 | ENST00000515930 | 101 nt | BASIC | 0.87 | □□□□□ -2.27 | | |
| CNRIP1 | Q96F85 | RNU6-861P-201 | ENST00000516745 | 106 nt | BASIC | 0.87 | □□□□□ -2.27 | | |
| CNRIP1 | Q96F85 | SCARNA15-202 | ENST00000516881 | 127 nt | BASIC | 0.87 | □□□□□ -2.27 | | |
| CNRIP1 | Q96F85 | IGHVIII-67-2-201 | ENST00000519849 | 88 nt | BASIC | 0.87 | □□□□□ -2.27 | | |
| CNRIP1 | Q96F85 | AL391516.1-201 | ENST00000554380 | 2449 nt | BASIC | 0.86 | □□□□□ -2.27 | | |
| CNRIP1 | Q96F85 | RNU6-654P-201 | ENST00000364373 | 107 nt | BASIC | 0.86 | □□□□□ -2.27 | | |
| CNRIP1 | Q96F85 | RNU6-580P-201 | ENST00000365159 | 107 nt | BASIC | 0.86 | □□□□□ -2.27 | | |
| CNRIP1 | Q96F85 | Y_RNA.330-201 | ENST00000365230 | 109 nt | BASIC | 0.86 | □□□□□ -2.27 | | |
| CNRIP1 | Q96F85 | Y_RNA.337-201 | ENST00000365312 | 102 nt | BASIC | 0.86 | □□□□□ -2.27 | | |
| CNRIP1 | Q96F85 | Y_RNA.351-201 | ENST00000365436 | 96 nt | BASIC | 0.86 | □□□□□ -2.27 | | |
| CNRIP1 | Q96F85 | Y_RNA.454-201 | ENST00000384224 | 113 nt | BASIC | 0.86 | □□□□□ -2.27 | | |
| CNRIP1 | Q96F85 | RNU6-125P-201 | ENST00000384505 | 107 nt | BASIC | 0.86 | □□□□□ -2.27 | | |
| CNRIP1 | Q96F85 | Y_RNA.521-201 | ENST00000384560 | 114 nt | BASIC | 0.86 | □□□□□ -2.27 | | |
| CNRIP1 | Q96F85 | RNU6-768P-201 | ENST00000384683 | 107 nt | BASIC | 0.86 | □□□□□ -2.27 | | |
| CNRIP1 | Q96F85 | MIR200A-201 | ENST00000384875 | 90 nt | BASIC | 0.86 | □□□□□ -2.27 | | |
| CNRIP1 | Q96F85 | RNU6-239P-201 | ENST00000390990 | 99 nt | BASIC | 0.86 | □□□□□ -2.27 | | |
| CNRIP1 | Q96F85 | MIR548I3-201 | ENST00000408378 | 149 nt | BASIC | 0.86 | □□□□□ -2.27 | | |
| CNRIP1 | Q96F85 | RNU6-1135P-201 | ENST00000411083 | 103 nt | BASIC | 0.86 | □□□□□ -2.27 | | |
| CNRIP1 | Q96F85 | AC090844.1-201 | ENST00000422019 | 156 nt | BASIC | 0.86 | □□□□□ -2.27 | | |
| CNRIP1 | Q96F85 | AC036111.3-201 | ENST00000526389 | 112 nt | BASIC | 0.86 | □□□□□ -2.27 | | |
| CNRIP1 | Q96F85 | AC131055.1-201 | ENST00000584626 | 316 nt | BASIC | 0.86 | □□□□□ -2.27 | | |
| CNRIP1 | Q96F85 | AC106800.4-201 | ENST00000614905 | 153 nt | BASIC | 0.86 | □□□□□ -2.27 | | |
| CNRIP1 | Q96F85 | Y_RNA.168-201 | ENST00000363740 | 102 nt | BASIC | 0.85 | □□□□□ -2.27 | | |
| CNRIP1 | Q96F85 | SNORD114-27-201 | ENST00000363766 | 70 nt | BASIC | 0.85 | □□□□□ -2.27 | | |
| CNRIP1 | Q96F85 | Y_RNA.357-201 | ENST00000365487 | 109 nt | BASIC | 0.85 | □□□□□ -2.27 | | |
| CNRIP1 | Q96F85 | MIR532-201 | ENST00000385025 | 91 nt | BASIC | 0.85 | □□□□□ -2.27 | | |
| CNRIP1 | Q96F85 | SNORD111-201 | ENST00000408139 | 94 nt | BASIC | 0.85 | □□□□□ -2.27 | | |
| CNRIP1 | Q96F85 | Y_RNA.662-201 | ENST00000516028 | 97 nt | BASIC | 0.85 | □□□□□ -2.27 | | |
| CNRIP1 | Q96F85 | RNU6-182P-201 | ENST00000516970 | 105 nt | BASIC | 0.85 | □□□□□ -2.27 | | |
| CNRIP1 | Q96F85 | MIR3646-201 | ENST00000578301 | 84 nt | BASIC | 0.85 | □□□□□ -2.27 | | |
| CNRIP1 | Q96F85 | PNRC2-204 | ENST00000579103 | 171 nt | TSL 2 BASIC | 0.85 | □□□□□ -2.27 | | |
| CNRIP1 | Q96F85 | MIR3671-201 | ENST00000580455 | 88 nt | BASIC | 0.85 | □□□□□ -2.27 | | |
| CNRIP1 | Q96F85 | MIR4264-201 | ENST00000583520 | 66 nt | BASIC | 0.85 | □□□□□ -2.27 | | |
| CNRIP1 | Q96F85 | AC091932.4-201 | ENST00000623386 | 200 nt | BASIC | 0.85 | □□□□□ -2.27 | | |
| CNRIP1 | Q96F85 | CCDC68-202 | ENST00000432185 | 4014 nt | APPRIS P1 TSL 1 (best) BASIC | 0.85 | □□□□□ -2.27 | | |
| CNRIP1 | Q96F85 | RNY1P10-201 | ENST00000363268 | 113 nt | BASIC | 0.84 | □□□□□ -2.27 | | |
| CNRIP1 | Q96F85 | SNORD113.3-201 | ENST00000364630 | 78 nt | BASIC | 0.84 | □□□□□ -2.27 | | |
| CNRIP1 | Q96F85 | SNORA26.6-201 | ENST00000391256 | 115 nt | BASIC | 0.84 | □□□□□ -2.27 | | |
| CNRIP1 | Q96F85 | RNU2-64P-201 | ENST00000411315 | 191 nt | BASIC | 0.84 | □□□□□ -2.27 | | |
| CNRIP1 | Q96F85 | AC244023.1-201 | ENST00000426884 | 112 nt | BASIC | 0.84 | □□□□□ -2.27 | | |
| CNRIP1 | Q96F85 | MTND5P15-201 | ENST00000434246 | 349 nt | BASIC | 0.84 | □□□□□ -2.27 | | |
| CNRIP1 | Q96F85 | AC107958.3-201 | ENST00000553410 | 431 nt | TSL 3 BASIC | 0.84 | □□□□□ -2.27 | | |
| CNRIP1 | Q96F85 | MIR4781-201 | ENST00000585250 | 76 nt | BASIC | 0.84 | □□□□□ -2.27 | | |
| CNRIP1 | Q96F85 | AC242498.1-201 | ENST00000604134 | 111 nt | BASIC | 0.84 | □□□□□ -2.27 | | |
| CNRIP1 | Q96F85 | MIR6767-201 | ENST00000637302 | 66 nt | BASIC | 0.84 | □□□□□ -2.27 | | |
| CNRIP1 | Q96F85 | RNU6-1082P-201 | ENST00000364574 | 107 nt | BASIC | 0.83 | □□□□□ -2.28 | | |
| CNRIP1 | Q96F85 | SNORA1.1-201 | ENST00000364671 | 133 nt | BASIC | 0.83 | □□□□□ -2.28 | | |
| CNRIP1 | Q96F85 | SNORD114-24-201 | ENST00000365029 | 72 nt | BASIC | 0.83 | □□□□□ -2.28 | | |
| CNRIP1 | Q96F85 | RNU6-1336P-201 | ENST00000383886 | 109 nt | BASIC | 0.83 | □□□□□ -2.28 | | |
| CNRIP1 | Q96F85 | SNORA22-201 | ENST00000383907 | 134 nt | BASIC | 0.83 | □□□□□ -2.28 | | |
| CNRIP1 | Q96F85 | SNORA22C-201 | ENST00000384614 | 134 nt | BASIC | 0.83 | □□□□□ -2.28 | | |
| CNRIP1 | Q96F85 | SNORA75.5-201 | ENST00000391291 | 81 nt | BASIC | 0.83 | □□□□□ -2.28 | | |
| CNRIP1 | Q96F85 | RNU6-1190P-201 | ENST00000410811 | 104 nt | BASIC | 0.83 | □□□□□ -2.28 | | |
| CNRIP1 | Q96F85 | AC108059.2-201 | ENST00000434626 | 151 nt | BASIC | 0.83 | □□□□□ -2.28 | | |
| CNRIP1 | Q96F85 | DIP2A-IT1-201 | ENST00000442434 | 428 nt | TSL 2 BASIC | 0.83 | □□□□□ -2.28 | | |
| CNRIP1 | Q96F85 | SNORD124-201 | ENST00000459577 | 104 nt | BASIC | 0.83 | □□□□□ -2.28 | | |
| CNRIP1 | Q96F85 | RNU6-1149P-201 | ENST00000516810 | 97 nt | BASIC | 0.83 | □□□□□ -2.28 | | |
| CNRIP1 | Q96F85 | HSPE1P19-201 | ENST00000603327 | 295 nt | BASIC | 0.83 | □□□□□ -2.28 | | |