Protein–RNA interactions for Protein: Q6P9F5

TRIM40, Tripartite motif-containing protein 40, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM40Q6P9F5 RNU6-504P-201ENST00000516568 104 ntBASIC0.14□□□□□ -2.39
TRIM40Q6P9F5 AC126177.2-201ENST00000552154 452 ntTSL 3 BASIC0.14□□□□□ -2.39
TRIM40Q6P9F5 MIR3678-201ENST00000578455 94 ntBASIC0.14□□□□□ -2.39
TRIM40Q6P9F5 AL008718.3-201ENST00000610217 321 ntBASIC0.14□□□□□ -2.39
TRIM40Q6P9F5 MIR369-201ENST00000362155 70 ntBASIC0.13□□□□□ -2.39
TRIM40Q6P9F5 SNORD42.2-201ENST00000365570 69 ntBASIC0.13□□□□□ -2.39
TRIM40Q6P9F5 Y_RNA.541-201ENST00000384640 113 ntBASIC0.13□□□□□ -2.39
TRIM40Q6P9F5 MT-TD-201ENST00000387419 68 ntBASIC0.13□□□□□ -2.39
TRIM40Q6P9F5 RNU6-101P-201ENST00000410323 104 ntBASIC0.13□□□□□ -2.39
TRIM40Q6P9F5 AL138752.1-201ENST00000452964 351 ntBASIC0.13□□□□□ -2.39
TRIM40Q6P9F5 AL583859.1-201ENST00000455871 335 ntTSL 3 BASIC0.13□□□□□ -2.39
TRIM40Q6P9F5 AC131281.1-201ENST00000522984 164 ntBASIC0.13□□□□□ -2.39
TRIM40Q6P9F5 AC006006.1-201ENST00000603082 144 ntBASIC0.13□□□□□ -2.39
TRIM40Q6P9F5 AC023932.2-201ENST00000603176 175 ntBASIC0.13□□□□□ -2.39
TRIM40Q6P9F5 AC078938.1-201ENST00000620993 318 ntBASIC0.13□□□□□ -2.39
TRIM40Q6P9F5 Y_RNA.66-201ENST00000362862 102 ntBASIC0.12□□□□□ -2.39
TRIM40Q6P9F5 RNU4-10P-201ENST00000364383 140 ntBASIC0.12□□□□□ -2.39
TRIM40Q6P9F5 RNU4-67P-201ENST00000364569 141 ntBASIC0.12□□□□□ -2.39
TRIM40Q6P9F5 Y_RNA.567-201ENST00000384736 106 ntBASIC0.12□□□□□ -2.39
TRIM40Q6P9F5 MIR7-2-201ENST00000384970 110 ntBASIC0.12□□□□□ -2.39
TRIM40Q6P9F5 RNA5SP299-201ENST00000391203 116 ntBASIC0.12□□□□□ -2.39
TRIM40Q6P9F5 AF228730.3-201ENST00000436691 102 ntBASIC0.12□□□□□ -2.39
TRIM40Q6P9F5 RNU6-863P-201ENST00000515989 104 ntBASIC0.12□□□□□ -2.39
TRIM40Q6P9F5 SNORA62.5-201ENST00000516634 120 ntBASIC0.12□□□□□ -2.39
TRIM40Q6P9F5 SNORA27.4-201ENST00000516650 95 ntBASIC0.12□□□□□ -2.39
TRIM40Q6P9F5 SNORA40.15-201ENST00000516884 107 ntBASIC0.12□□□□□ -2.39
TRIM40Q6P9F5 Y_RNA.721-201ENST00000517207 102 ntBASIC0.12□□□□□ -2.39
TRIM40Q6P9F5 AC004148.1-201ENST00000571506 398 ntTSL 5 BASIC0.12□□□□□ -2.39
TRIM40Q6P9F5 MIR8087-201ENST00000612745 78 ntBASIC0.12□□□□□ -2.39
TRIM40Q6P9F5 snoU18.1-201ENST00000629629 71 ntBASIC0.12□□□□□ -2.39
TRIM40Q6P9F5 VPS35-212ENST00000640313 141 ntTSL 5 BASIC0.12□□□□□ -2.39
TRIM40Q6P9F5 Y_RNA.7-201ENST00000362352 102 ntBASIC0.11□□□□□ -2.39
TRIM40Q6P9F5 Y_RNA.31-201ENST00000362574 102 ntBASIC0.11□□□□□ -2.39
TRIM40Q6P9F5 snoU2_19.2-201ENST00000363024 80 ntBASIC0.11□□□□□ -2.39
TRIM40Q6P9F5 Y_RNA.258-201ENST00000364613 105 ntBASIC0.11□□□□□ -2.39
TRIM40Q6P9F5 Y_RNA.389-201ENST00000383924 113 ntBASIC0.11□□□□□ -2.39
TRIM40Q6P9F5 Y_RNA.410-201ENST00000383992 113 ntBASIC0.11□□□□□ -2.39
TRIM40Q6P9F5 SNORA26-201ENST00000391286 122 ntBASIC0.11□□□□□ -2.39
TRIM40Q6P9F5 AL731563.1-201ENST00000442202 214 ntBASIC0.11□□□□□ -2.39
TRIM40Q6P9F5 AC137770.1-201ENST00000504620 530 ntTSL 3 BASIC0.11□□□□□ -2.39
TRIM40Q6P9F5 AC133485.4-201ENST00000561835 220 ntBASIC0.11□□□□□ -2.39
TRIM40Q6P9F5 Y_RNA.804-201ENST00000615262 101 ntBASIC0.11□□□□□ -2.39
TRIM40Q6P9F5 MIR6718-201ENST00000616153 80 ntBASIC0.11□□□□□ -2.39
TRIM40Q6P9F5 NEAT1_2.1-201ENST00000620525 105 ntBASIC0.11□□□□□ -2.39
TRIM40Q6P9F5 Y_RNA.229-201ENST00000364347 113 ntBASIC0.1□□□□□ -2.39
TRIM40Q6P9F5 Y_RNA.380-201ENST00000365663 111 ntBASIC0.1□□□□□ -2.39
TRIM40Q6P9F5 RNU6-1189P-201ENST00000383958 107 ntBASIC0.1□□□□□ -2.39
TRIM40Q6P9F5 Y_RNA.431-201ENST00000384086 102 ntBASIC0.1□□□□□ -2.39
TRIM40Q6P9F5 Y_RNA.440-201ENST00000384120 114 ntBASIC0.1□□□□□ -2.39
TRIM40Q6P9F5 SNORA8.3-201ENST00000384679 139 ntBASIC0.1□□□□□ -2.39
TRIM40Q6P9F5 MIR215-201ENST00000384858 110 ntBASIC0.1□□□□□ -2.39
TRIM40Q6P9F5 MIR1295A-201ENST00000408463 79 ntBASIC0.1□□□□□ -2.39
TRIM40Q6P9F5 RNA5SP330-201ENST00000517096 96 ntBASIC0.1□□□□□ -2.39
TRIM40Q6P9F5 UBE2WP1-201ENST00000362030 340 ntBASIC0.09□□□□□ -2.4
TRIM40Q6P9F5 Y_RNA.24-201ENST00000362508 103 ntBASIC0.09□□□□□ -2.4
TRIM40Q6P9F5 SNORA26.6-201ENST00000391256 115 ntBASIC0.09□□□□□ -2.4
TRIM40Q6P9F5 SNORD93-201ENST00000408813 74 ntBASIC0.09□□□□□ -2.4
TRIM40Q6P9F5 RNU2-55P-201ENST00000411146 174 ntBASIC0.09□□□□□ -2.4
TRIM40Q6P9F5 AC073261.1-201ENST00000429409 121 ntBASIC0.09□□□□□ -2.4
TRIM40Q6P9F5 AC103879.1-201ENST00000503093 255 ntTSL 2 BASIC0.09□□□□□ -2.4
TRIM40Q6P9F5 RNU6-1299P-201ENST00000516316 100 ntBASIC0.09□□□□□ -2.4
TRIM40Q6P9F5 AC069113.3-201ENST00000521019 150 ntBASIC0.09□□□□□ -2.4
TRIM40Q6P9F5 MIR4801-201ENST00000582704 82 ntBASIC0.09□□□□□ -2.4
TRIM40Q6P9F5 MIR8066-201ENST00000617280 78 ntBASIC0.09□□□□□ -2.4
TRIM40Q6P9F5 MIR6717-201ENST00000622747 73 ntBASIC0.09□□□□□ -2.4
TRIM40Q6P9F5 MIR4315-1-201ENST00000636800 73 ntBASIC0.09□□□□□ -2.4
TRIM40Q6P9F5 MIR4315-2-201ENST00000640925 73 ntBASIC0.09□□□□□ -2.4
TRIM40Q6P9F5 Y_RNA.42-201ENST00000362660 108 ntBASIC0.08□□□□□ -2.4
TRIM40Q6P9F5 Y_RNA.91-201ENST00000363042 107 ntBASIC0.08□□□□□ -2.4
TRIM40Q6P9F5 SNORA36.1-201ENST00000363424 132 ntBASIC0.08□□□□□ -2.4
TRIM40Q6P9F5 RNU6-770P-201ENST00000363929 105 ntBASIC0.08□□□□□ -2.4
TRIM40Q6P9F5 RNU6-740P-201ENST00000364734 105 ntBASIC0.08□□□□□ -2.4
TRIM40Q6P9F5 Y_RNA.634-201ENST00000364811 113 ntBASIC0.08□□□□□ -2.4
TRIM40Q6P9F5 RNU6-484P-201ENST00000384016 107 ntBASIC0.08□□□□□ -2.4
TRIM40Q6P9F5 Y_RNA.419-201ENST00000384041 102 ntBASIC0.08□□□□□ -2.4
TRIM40Q6P9F5 RNU6-815P-201ENST00000384080 113 ntBASIC0.08□□□□□ -2.4
TRIM40Q6P9F5 RNY3P14-201ENST00000384309 102 ntBASIC0.08□□□□□ -2.4
TRIM40Q6P9F5 RNU4-83P-201ENST00000410863 133 ntBASIC0.08□□□□□ -2.4
TRIM40Q6P9F5 RPL21P38-201ENST00000418090 167 ntBASIC0.08□□□□□ -2.4
TRIM40Q6P9F5 ELOCP20-201ENST00000422460 345 ntBASIC0.08□□□□□ -2.4
TRIM40Q6P9F5 AC068658.1-201ENST00000507509 388 ntTSL 2 BASIC0.08□□□□□ -2.4
TRIM40Q6P9F5 AP003327.1-201ENST00000529684 127 ntBASIC0.08□□□□□ -2.4
TRIM40Q6P9F5 AP001282.2-201ENST00000616149 309 ntBASIC0.08□□□□□ -2.4
TRIM40Q6P9F5 MIR302B-201ENST00000362188 73 ntBASIC0.07□□□□□ -2.4
TRIM40Q6P9F5 MIR342-201ENST00000362212 99 ntBASIC0.07□□□□□ -2.4
TRIM40Q6P9F5 Y_RNA.28-201ENST00000362554 111 ntBASIC0.07□□□□□ -2.4
TRIM40Q6P9F5 Y_RNA.276-201ENST00000364732 109 ntBASIC0.07□□□□□ -2.4
TRIM40Q6P9F5 Y_RNA.572-201ENST00000384757 98 ntBASIC0.07□□□□□ -2.4
TRIM40Q6P9F5 MIR626-201ENST00000385032 94 ntBASIC0.07□□□□□ -2.4
TRIM40Q6P9F5 MIR1197-201ENST00000408818 88 ntBASIC0.07□□□□□ -2.4
TRIM40Q6P9F5 RNA5SP261-201ENST00000410536 106 ntBASIC0.07□□□□□ -2.4
TRIM40Q6P9F5 RPL39P25-201ENST00000449384 154 ntBASIC0.07□□□□□ -2.4
TRIM40Q6P9F5 RNU6-469P-201ENST00000516253 101 ntBASIC0.07□□□□□ -2.4
TRIM40Q6P9F5 RNA5SP153-201ENST00000516498 76 ntBASIC0.07□□□□□ -2.4
TRIM40Q6P9F5 AC112693.2-201ENST00000556538 232 ntBASIC0.07□□□□□ -2.4
TRIM40Q6P9F5 AC097639.2-201ENST00000603159 172 ntBASIC0.07□□□□□ -2.4
TRIM40Q6P9F5 Y_RNA.19-201ENST00000362462 99 ntBASIC0.06□□□□□ -2.4
TRIM40Q6P9F5 RNU6-653P-201ENST00000363074 106 ntBASIC0.06□□□□□ -2.4
TRIM40Q6P9F5 RNU6-1099P-201ENST00000363533 107 ntBASIC0.06□□□□□ -2.4
TRIM40Q6P9F5 Y_RNA.214-201ENST00000364201 112 ntBASIC0.06□□□□□ -2.4
Retrieved 100 of 98,524 protein–RNA pairs in 141.8 ms