Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 AC106754.2-201ENST00000623006 233 ntBASIC1.7□□□□□ -2.14
VPS53Q5VIR6 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC1.7□□□□□ -2.14
VPS53Q5VIR6 AP003174.1-201ENST00000306533 376 ntTSL 2 BASIC1.69□□□□□ -2.14
VPS53Q5VIR6 RNU6-309P-201ENST00000364573 106 ntBASIC1.69□□□□□ -2.14
VPS53Q5VIR6 Y_RNA.351-201ENST00000365436 96 ntBASIC1.69□□□□□ -2.14
VPS53Q5VIR6 Y_RNA.370-201ENST00000365589 108 ntBASIC1.69□□□□□ -2.14
VPS53Q5VIR6 RNU6-22P-201ENST00000384355 107 ntBASIC1.69□□□□□ -2.14
VPS53Q5VIR6 MIR548I2-201ENST00000408348 149 ntBASIC1.69□□□□□ -2.14
VPS53Q5VIR6 AL603825.1-201ENST00000438481 80 ntBASIC1.69□□□□□ -2.14
VPS53Q5VIR6 RNU7-96P-201ENST00000459535 64 ntBASIC1.69□□□□□ -2.14
VPS53Q5VIR6 RPS29P24-201ENST00000486345 171 ntBASIC1.69□□□□□ -2.14
VPS53Q5VIR6 LINC02514-201ENST00000509058 498 ntTSL 3 BASIC1.69□□□□□ -2.14
VPS53Q5VIR6 RNU6-479P-201ENST00000516348 105 ntBASIC1.69□□□□□ -2.14
VPS53Q5VIR6 RNU7-43P-201ENST00000516554 64 ntBASIC1.69□□□□□ -2.14
VPS53Q5VIR6 MIR548AR-201ENST00000582191 57 ntBASIC1.69□□□□□ -2.14
VPS53Q5VIR6 CLRN1-AS1.1-201ENST00000615643 79 ntBASIC1.69□□□□□ -2.14
VPS53Q5VIR6 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC1.69□□□□□ -2.14
VPS53Q5VIR6 Y_RNA.71-201ENST00000362892 104 ntBASIC1.68□□□□□ -2.14
VPS53Q5VIR6 Y_RNA.218-201ENST00000364218 104 ntBASIC1.68□□□□□ -2.14
VPS53Q5VIR6 SNORA70.7-201ENST00000384159 133 ntBASIC1.68□□□□□ -2.14
VPS53Q5VIR6 AP1B1P2-201ENST00000416196 106 ntBASIC1.68□□□□□ -2.14
VPS53Q5VIR6 SNX2P2-201ENST00000424553 323 ntBASIC1.68□□□□□ -2.14
VPS53Q5VIR6 AC008267.6-201ENST00000441664 139 ntBASIC1.68□□□□□ -2.14
VPS53Q5VIR6 AL158147.1-201ENST00000443970 75 ntBASIC1.68□□□□□ -2.14
VPS53Q5VIR6 RNU6-998P-201ENST00000515894 101 ntBASIC1.68□□□□□ -2.14
VPS53Q5VIR6 RNU7-70P-201ENST00000516941 66 ntBASIC1.68□□□□□ -2.14
VPS53Q5VIR6 AC019176.1-201ENST00000518519 225 ntBASIC1.68□□□□□ -2.14
VPS53Q5VIR6 AL513534.2-201ENST00000603836 250 ntBASIC1.68□□□□□ -2.14
VPS53Q5VIR6 Y_RNA.114-201ENST00000363265 113 ntBASIC1.67□□□□□ -2.14
VPS53Q5VIR6 RNU6-647P-201ENST00000364243 107 ntBASIC1.67□□□□□ -2.14
VPS53Q5VIR6 RNU1-133P-201ENST00000364867 167 ntBASIC1.67□□□□□ -2.14
VPS53Q5VIR6 SNORD116-14-201ENST00000383894 92 ntBASIC1.67□□□□□ -2.14
VPS53Q5VIR6 SNORD116-17-201ENST00000383929 92 ntBASIC1.67□□□□□ -2.14
VPS53Q5VIR6 SNORA24-201ENST00000384096 131 ntBASIC1.67□□□□□ -2.14
VPS53Q5VIR6 Y_RNA.494-201ENST00000384432 111 ntBASIC1.67□□□□□ -2.14
VPS53Q5VIR6 SNORD116-15-201ENST00000384445 92 ntBASIC1.67□□□□□ -2.14
VPS53Q5VIR6 Y_RNA.537-201ENST00000384626 109 ntBASIC1.67□□□□□ -2.14
VPS53Q5VIR6 SNORD116-19-201ENST00000384729 92 ntBASIC1.67□□□□□ -2.14
VPS53Q5VIR6 AL451046.2-201ENST00000403074 277 ntBASIC1.67□□□□□ -2.14
VPS53Q5VIR6 SLC8A1-AS1-230ENST00000627538 212 ntTSL 5 BASIC1.67□□□□□ -2.14
VPS53Q5VIR6 AC108866.1-201ENST00000503073 2339 ntTSL 5 BASIC1.67□□□□□ -2.14
VPS53Q5VIR6 RNU6-508P-201ENST00000363231 103 ntBASIC1.66□□□□□ -2.14
VPS53Q5VIR6 Y_RNA.127-201ENST00000363386 109 ntBASIC1.66□□□□□ -2.14
VPS53Q5VIR6 RNU6-1081P-201ENST00000384537 107 ntBASIC1.66□□□□□ -2.14
VPS53Q5VIR6 RNU6-1067P-201ENST00000384752 107 ntBASIC1.66□□□□□ -2.14
VPS53Q5VIR6 RNU6-1168P-201ENST00000390831 104 ntBASIC1.66□□□□□ -2.14
VPS53Q5VIR6 SNORD28B-201ENST00000390993 75 ntBASIC1.66□□□□□ -2.14
VPS53Q5VIR6 ZNF468-202ENST00000396409 384 ntTSL 5 BASIC1.66□□□□□ -2.14
VPS53Q5VIR6 AC009474.2-201ENST00000451383 136 ntBASIC1.66□□□□□ -2.14
VPS53Q5VIR6 DLEU2_5.2-201ENST00000610606 84 ntBASIC1.66□□□□□ -2.14
VPS53Q5VIR6 Metazoa_SRP.32-201ENST00000622685 286 ntBASIC1.66□□□□□ -2.14
VPS53Q5VIR6 AC091932.4-201ENST00000623386 200 ntBASIC1.66□□□□□ -2.14
VPS53Q5VIR6 LINC00643-201ENST00000334389 3247 ntTSL 2 BASIC1.66□□□□□ -2.14
VPS53Q5VIR6 UHRF1BP1L-203ENST00000545232 4088 ntTSL 1 (best) BASIC1.65□□□□□ -2.14
VPS53Q5VIR6 ZNF209P-201ENST00000593450 2304 ntBASIC1.65□□□□□ -2.15
VPS53Q5VIR6 Y_RNA.294-201ENST00000364916 102 ntBASIC1.65□□□□□ -2.15
VPS53Q5VIR6 Y_RNA.338-201ENST00000365320 114 ntBASIC1.65□□□□□ -2.15
VPS53Q5VIR6 RPS27P16-201ENST00000425758 201 ntBASIC1.65□□□□□ -2.15
VPS53Q5VIR6 AL035398.1-201ENST00000430869 322 ntBASIC1.65□□□□□ -2.15
VPS53Q5VIR6 RN7SKP179-201ENST00000516126 217 ntBASIC1.65□□□□□ -2.15
VPS53Q5VIR6 MIR4764-201ENST00000580680 88 ntBASIC1.65□□□□□ -2.15
VPS53Q5VIR6 RNY1P6-201ENST00000384193 109 ntBASIC1.64□□□□□ -2.15
VPS53Q5VIR6 RNU2-51P-201ENST00000410708 197 ntBASIC1.64□□□□□ -2.15
VPS53Q5VIR6 RNU1-98P-201ENST00000458992 160 ntBASIC1.64□□□□□ -2.15
VPS53Q5VIR6 AC108729.3-201ENST00000513484 108 ntBASIC1.64□□□□□ -2.15
VPS53Q5VIR6 RNU7-53P-201ENST00000516705 60 ntBASIC1.64□□□□□ -2.15
VPS53Q5VIR6 RNU6-1234P-201ENST00000516877 103 ntBASIC1.64□□□□□ -2.15
VPS53Q5VIR6 TRAJ36-201ENST00000614481 58 ntAPPRIS P1 BASIC1.64□□□□□ -2.15
VPS53Q5VIR6 AL365222.1-201ENST00000614661 98 ntBASIC1.64□□□□□ -2.15
VPS53Q5VIR6 AC243994.1-201ENST00000618627 109 ntBASIC1.64□□□□□ -2.15
VPS53Q5VIR6 RNU6-349P-201ENST00000362402 107 ntBASIC1.63□□□□□ -2.15
VPS53Q5VIR6 Y_RNA.291-201ENST00000364886 113 ntBASIC1.63□□□□□ -2.15
VPS53Q5VIR6 SNORD41-201ENST00000386967 70 ntBASIC1.63□□□□□ -2.15
VPS53Q5VIR6 Y_RNA.617-201ENST00000410920 90 ntBASIC1.63□□□□□ -2.15
VPS53Q5VIR6 AL353614.1-201ENST00000445631 206 ntTSL 5 BASIC1.63□□□□□ -2.15
VPS53Q5VIR6 RNU7-73P-201ENST00000458743 63 ntBASIC1.63□□□□□ -2.15
VPS53Q5VIR6 RNU5E-3P-201ENST00000515913 68 ntBASIC1.63□□□□□ -2.15
VPS53Q5VIR6 RNU6-1333P-201ENST00000516162 93 ntBASIC1.63□□□□□ -2.15
VPS53Q5VIR6 RNU6-313P-201ENST00000516317 112 ntBASIC1.63□□□□□ -2.15
VPS53Q5VIR6 RNU6-659P-201ENST00000516454 104 ntBASIC1.63□□□□□ -2.15
VPS53Q5VIR6 Y_RNA.712-201ENST00000517011 92 ntBASIC1.63□□□□□ -2.15
VPS53Q5VIR6 MIR4421-201ENST00000578133 69 ntBASIC1.63□□□□□ -2.15
VPS53Q5VIR6 AL357312.1-201ENST00000603879 298 ntBASIC1.63□□□□□ -2.15
VPS53Q5VIR6 MIR4791-201ENST00000607666 84 ntBASIC1.63□□□□□ -2.15
VPS53Q5VIR6 MIR7974-201ENST00000615835 79 ntBASIC1.63□□□□□ -2.15
VPS53Q5VIR6 MIR302B-201ENST00000362188 73 ntBASIC1.62□□□□□ -2.15
VPS53Q5VIR6 RNU6-235P-201ENST00000362644 107 ntBASIC1.62□□□□□ -2.15
VPS53Q5VIR6 MIR520C-201ENST00000385005 87 ntBASIC1.62□□□□□ -2.15
VPS53Q5VIR6 RNU6-1154P-201ENST00000391001 104 ntBASIC1.62□□□□□ -2.15
VPS53Q5VIR6 RNU7-67P-201ENST00000459003 62 ntBASIC1.62□□□□□ -2.15
VPS53Q5VIR6 RNU2-11P-201ENST00000459191 187 ntBASIC1.62□□□□□ -2.15
VPS53Q5VIR6 AC004223.1-201ENST00000479840 271 ntBASIC1.62□□□□□ -2.15
VPS53Q5VIR6 RNU6-922P-201ENST00000516753 99 ntBASIC1.62□□□□□ -2.15
VPS53Q5VIR6 MIR548AI-201ENST00000579940 88 ntBASIC1.62□□□□□ -2.15
VPS53Q5VIR6 AC008133.2-201ENST00000624540 351 ntBASIC1.62□□□□□ -2.15
VPS53Q5VIR6 AL596211.1-201ENST00000569873 2277 ntBASIC1.62□□□□□ -2.15
VPS53Q5VIR6 MIR342-201ENST00000362212 99 ntBASIC1.61□□□□□ -2.15
VPS53Q5VIR6 SNORA51.10-201ENST00000384418 136 ntBASIC1.61□□□□□ -2.15
VPS53Q5VIR6 MIR758-201ENST00000390227 88 ntBASIC1.61□□□□□ -2.15
VPS53Q5VIR6 AC068338.1-201ENST00000565567 176 ntBASIC1.61□□□□□ -2.15
Retrieved 100 of 98,524 protein–RNA pairs in 101 ms