Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 SNORD115-15-201ENST00000364809 81 ntBASIC1.28□□□□□ -2.2
HDAC4P56524 RNU6-818P-201ENST00000364837 108 ntBASIC1.28□□□□□ -2.2
HDAC4P56524 SNORD115-1-201ENST00000364961 82 ntBASIC1.28□□□□□ -2.2
HDAC4P56524 SNORD115-26-201ENST00000365067 82 ntBASIC1.28□□□□□ -2.2
HDAC4P56524 SNORD115-10-201ENST00000365073 81 ntBASIC1.28□□□□□ -2.2
HDAC4P56524 SNORA1.2-201ENST00000365189 134 ntBASIC1.28□□□□□ -2.2
HDAC4P56524 SNORD115-43-201ENST00000365503 82 ntBASIC1.28□□□□□ -2.2
HDAC4P56524 RNU6-597P-201ENST00000365620 102 ntBASIC1.28□□□□□ -2.2
HDAC4P56524 SNORD115-36-201ENST00000365629 82 ntBASIC1.28□□□□□ -2.2
HDAC4P56524 Y_RNA.440-201ENST00000384120 114 ntBASIC1.28□□□□□ -2.2
HDAC4P56524 Y_RNA.542-201ENST00000384641 111 ntBASIC1.28□□□□□ -2.2
HDAC4P56524 MT-TR-201ENST00000387439 65 ntBASIC1.28□□□□□ -2.2
HDAC4P56524 RNU6ATAC20P-201ENST00000408436 127 ntBASIC1.28□□□□□ -2.2
HDAC4P56524 AC107027.2-201ENST00000512197 115 ntBASIC1.28□□□□□ -2.2
HDAC4P56524 SNORA31.2-201ENST00000516019 134 ntBASIC1.28□□□□□ -2.2
HDAC4P56524 MIR3668-201ENST00000582138 75 ntBASIC1.28□□□□□ -2.2
HDAC4P56524 SNORD115-40-201ENST00000606510 82 ntBASIC1.28□□□□□ -2.2
HDAC4P56524 AC098479.1-201ENST00000609225 154 ntBASIC1.28□□□□□ -2.2
HDAC4P56524 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC1.28□□□□□ -2.2
HDAC4P56524 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC1.27□□□□□ -2.21
HDAC4P56524 RNU6-1082P-201ENST00000364574 107 ntBASIC1.27□□□□□ -2.21
HDAC4P56524 RNU6-1292P-201ENST00000383856 107 ntBASIC1.27□□□□□ -2.21
HDAC4P56524 Y_RNA.410-201ENST00000383992 113 ntBASIC1.27□□□□□ -2.21
HDAC4P56524 RNU6-239P-201ENST00000390990 99 ntBASIC1.27□□□□□ -2.21
HDAC4P56524 SNORA40.5-201ENST00000391061 128 ntBASIC1.27□□□□□ -2.21
HDAC4P56524 RNU6-394P-201ENST00000410735 107 ntBASIC1.27□□□□□ -2.21
HDAC4P56524 AL360175.1-201ENST00000426547 285 ntTSL 5 BASIC1.27□□□□□ -2.21
HDAC4P56524 AC245047.7-201ENST00000440265 293 ntBASIC1.27□□□□□ -2.21
HDAC4P56524 MIR5197-201ENST00000583721 112 ntBASIC1.27□□□□□ -2.21
HDAC4P56524 PRELID3BP2-201ENST00000605362 201 ntBASIC1.27□□□□□ -2.21
HDAC4P56524 LRRIQ1-202ENST00000393217 5394 ntAPPRIS P1 TSL 1 (best) BASIC1.27□□□□□ -2.21
HDAC4P56524 CXADR-202ENST00000356275 270 ntTSL 1 (best) BASIC1.26□□□□□ -2.21
HDAC4P56524 SNORA25.3-201ENST00000363205 127 ntBASIC1.26□□□□□ -2.21
HDAC4P56524 Y_RNA.272-201ENST00000364696 102 ntBASIC1.26□□□□□ -2.21
HDAC4P56524 RNU1-93P-201ENST00000364704 169 ntBASIC1.26□□□□□ -2.21
HDAC4P56524 Y_RNA.393-201ENST00000383936 102 ntBASIC1.26□□□□□ -2.21
HDAC4P56524 RNU6-1189P-201ENST00000383958 107 ntBASIC1.26□□□□□ -2.21
HDAC4P56524 Y_RNA.537-201ENST00000384626 109 ntBASIC1.26□□□□□ -2.21
HDAC4P56524 Y_RNA.555-201ENST00000384673 110 ntBASIC1.26□□□□□ -2.21
HDAC4P56524 RNU6-1067P-201ENST00000384752 107 ntBASIC1.26□□□□□ -2.21
HDAC4P56524 MIR222-201ENST00000384992 110 ntBASIC1.26□□□□□ -2.21
HDAC4P56524 MIR618-201ENST00000385287 98 ntBASIC1.26□□□□□ -2.21
HDAC4P56524 MIR1185-1-201ENST00000408598 86 ntBASIC1.26□□□□□ -2.21
HDAC4P56524 LINC01866-201ENST00000421181 201 ntTSL 3 BASIC1.26□□□□□ -2.21
HDAC4P56524 AL133373.1-201ENST00000497098 94 ntBASIC1.26□□□□□ -2.21
HDAC4P56524 SCARNA15-202ENST00000516881 127 ntBASIC1.26□□□□□ -2.21
HDAC4P56524 MIR151B-201ENST00000584249 96 ntBASIC1.26□□□□□ -2.21
HDAC4P56524 AC243994.1-201ENST00000618627 109 ntBASIC1.26□□□□□ -2.21
HDAC4P56524 MTND1P7-201ENST00000632801 297 ntBASIC1.26□□□□□ -2.21
HDAC4P56524 RNU6-1130P-201ENST00000365434 107 ntBASIC1.25□□□□□ -2.21
HDAC4P56524 SNORA27-201ENST00000384323 126 ntBASIC1.25□□□□□ -2.21
HDAC4P56524 MIR624-201ENST00000385217 97 ntBASIC1.25□□□□□ -2.21
HDAC4P56524 MIR548I3-201ENST00000408378 149 ntBASIC1.25□□□□□ -2.21
HDAC4P56524 MIR548I1-201ENST00000408810 149 ntBASIC1.25□□□□□ -2.21
HDAC4P56524 MIR548AO-201ENST00000579992 96 ntBASIC1.25□□□□□ -2.21
HDAC4P56524 AC104465.1-201ENST00000611365 139 ntBASIC1.25□□□□□ -2.21
HDAC4P56524 CLRN1-AS1.1-201ENST00000615643 79 ntBASIC1.25□□□□□ -2.21
HDAC4P56524 MIR6788-201ENST00000618842 66 ntBASIC1.25□□□□□ -2.21
HDAC4P56524 MIR4251-201ENST00000635819 61 ntBASIC1.25□□□□□ -2.21
HDAC4P56524 MIR96-201ENST00000362288 78 ntBASIC1.24□□□□□ -2.21
HDAC4P56524 Y_RNA.337-201ENST00000365312 102 ntBASIC1.24□□□□□ -2.21
HDAC4P56524 Y_RNA.357-201ENST00000365487 109 ntBASIC1.24□□□□□ -2.21
HDAC4P56524 RNU6-804P-201ENST00000384286 107 ntBASIC1.24□□□□□ -2.21
HDAC4P56524 SNORA25-201ENST00000384384 134 ntBASIC1.24□□□□□ -2.21
HDAC4P56524 Y_RNA.521-201ENST00000384560 114 ntBASIC1.24□□□□□ -2.21
HDAC4P56524 RNU6-913P-201ENST00000390913 95 ntBASIC1.24□□□□□ -2.21
HDAC4P56524 AL392103.1-201ENST00000447000 198 ntBASIC1.24□□□□□ -2.21
HDAC4P56524 AL022345.2-201ENST00000606307 135 ntBASIC1.24□□□□□ -2.21
HDAC4P56524 IST1-227ENST00000626438 126 ntTSL 5 BASIC1.24□□□□□ -2.21
HDAC4P56524 RNA5SP264-201ENST00000363115 107 ntBASIC1.23□□□□□ -2.21
HDAC4P56524 Y_RNA.180-201ENST00000363867 113 ntBASIC1.23□□□□□ -2.21
HDAC4P56524 Y_RNA.205-201ENST00000364128 113 ntBASIC1.23□□□□□ -2.21
HDAC4P56524 Y_RNA.270-201ENST00000364693 104 ntBASIC1.23□□□□□ -2.21
HDAC4P56524 Y_RNA.374-201ENST00000365606 101 ntBASIC1.23□□□□□ -2.21
HDAC4P56524 SNORA51.10-201ENST00000384418 136 ntBASIC1.23□□□□□ -2.21
HDAC4P56524 RNU6ATAC8P-201ENST00000408460 126 ntBASIC1.23□□□□□ -2.21
HDAC4P56524 RNA5SP127-201ENST00000411051 133 ntBASIC1.23□□□□□ -2.21
HDAC4P56524 RPS29P24-201ENST00000486345 171 ntBASIC1.23□□□□□ -2.21
HDAC4P56524 AC111194.2-201ENST00000511222 455 ntTSL 5 BASIC1.23□□□□□ -2.21
HDAC4P56524 RNU6-998P-201ENST00000515894 101 ntBASIC1.23□□□□□ -2.21
HDAC4P56524 IGHVIII-67-2-201ENST00000519849 88 ntBASIC1.23□□□□□ -2.21
HDAC4P56524 SNORA25.7-201ENST00000364375 127 ntBASIC1.22□□□□□ -2.21
HDAC4P56524 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC1.22□□□□□ -2.21
HDAC4P56524 RNU6-910P-201ENST00000390844 107 ntBASIC1.22□□□□□ -2.21
HDAC4P56524 Y_RNA.580-201ENST00000391004 95 ntBASIC1.22□□□□□ -2.21
HDAC4P56524 SNORA75.2-201ENST00000391138 150 ntBASIC1.22□□□□□ -2.21
HDAC4P56524 SNORA75.3-201ENST00000391231 150 ntBASIC1.22□□□□□ -2.21
HDAC4P56524 RNU6-588P-201ENST00000410281 105 ntBASIC1.22□□□□□ -2.21
HDAC4P56524 AC090844.1-201ENST00000422019 156 ntBASIC1.22□□□□□ -2.21
HDAC4P56524 AC107297.1-201ENST00000459991 176 ntBASIC1.22□□□□□ -2.21
HDAC4P56524 SNORA70.22-201ENST00000517160 124 ntBASIC1.22□□□□□ -2.21
HDAC4P56524 MIR3144-201ENST00000579460 79 ntBASIC1.22□□□□□ -2.21
HDAC4P56524 MIR103A2-201ENST00000362154 78 ntBASIC1.21□□□□□ -2.22
HDAC4P56524 Y_RNA.52-201ENST00000362760 96 ntBASIC1.21□□□□□ -2.22
HDAC4P56524 MIR520E-201ENST00000384867 87 ntBASIC1.21□□□□□ -2.22
HDAC4P56524 RNU6-1190P-201ENST00000410811 104 ntBASIC1.21□□□□□ -2.22
HDAC4P56524 MRPL35P3-201ENST00000421557 364 ntBASIC1.21□□□□□ -2.22
HDAC4P56524 RPS29P1-201ENST00000465274 159 ntBASIC1.21□□□□□ -2.22
HDAC4P56524 RNU6-958P-201ENST00000516995 106 ntBASIC1.21□□□□□ -2.22
HDAC4P56524 RNU2-60P-201ENST00000517290 128 ntBASIC1.21□□□□□ -2.22
Retrieved 100 of 98,524 protein–RNA pairs in 266.2 ms