Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 AC087499.4-201ENST00000448505 178 ntBASIC1.14□□□□□ -2.23
CTCFP49711 AL121580.1-201ENST00000449941 219 ntTSL 3 BASIC1.14□□□□□ -2.23
CTCFP49711 UBL5P1-201ENST00000507979 193 ntBASIC1.14□□□□□ -2.23
CTCFP49711 SEPT14P17-201ENST00000617978 177 ntBASIC1.14□□□□□ -2.23
CTCFP49711 MTND1P7-201ENST00000632801 297 ntBASIC1.14□□□□□ -2.23
CTCFP49711 SNORD115-34-201ENST00000362441 82 ntBASIC1.13□□□□□ -2.23
CTCFP49711 SNORD115-12-201ENST00000362583 82 ntBASIC1.13□□□□□ -2.23
CTCFP49711 SNORD115-29-201ENST00000362834 82 ntBASIC1.13□□□□□ -2.23
CTCFP49711 SNORD115-9-201ENST00000362912 82 ntBASIC1.13□□□□□ -2.23
CTCFP49711 SNORD115-21-201ENST00000362963 81 ntBASIC1.13□□□□□ -2.23
CTCFP49711 SNORD115-14-201ENST00000363090 81 ntBASIC1.13□□□□□ -2.23
CTCFP49711 SNORD115-13-201ENST00000363358 82 ntBASIC1.13□□□□□ -2.23
CTCFP49711 SNORD115-41-201ENST00000363608 82 ntBASIC1.13□□□□□ -2.23
CTCFP49711 SNORD115-11-201ENST00000363616 82 ntBASIC1.13□□□□□ -2.23
CTCFP49711 SNORD115-5-201ENST00000363633 82 ntBASIC1.13□□□□□ -2.23
CTCFP49711 RNU6-103P-201ENST00000363686 107 ntBASIC1.13□□□□□ -2.23
CTCFP49711 SNORD115-39-201ENST00000363694 82 ntBASIC1.13□□□□□ -2.23
CTCFP49711 SNORD115-4-201ENST00000363810 82 ntBASIC1.13□□□□□ -2.23
CTCFP49711 SNORD115-16-201ENST00000363887 82 ntBASIC1.13□□□□□ -2.23
CTCFP49711 SNORD115-6-201ENST00000363942 82 ntBASIC1.13□□□□□ -2.23
CTCFP49711 SNORD115-42-201ENST00000364273 82 ntBASIC1.13□□□□□ -2.23
CTCFP49711 RNU4-38P-201ENST00000364472 129 ntBASIC1.13□□□□□ -2.23
CTCFP49711 SNORD115-15-201ENST00000364809 81 ntBASIC1.13□□□□□ -2.23
CTCFP49711 SNORD115-1-201ENST00000364961 82 ntBASIC1.13□□□□□ -2.23
CTCFP49711 Y_RNA.308-201ENST00000365043 101 ntBASIC1.13□□□□□ -2.23
CTCFP49711 SNORD115-26-201ENST00000365067 82 ntBASIC1.13□□□□□ -2.23
CTCFP49711 SNORD115-10-201ENST00000365073 81 ntBASIC1.13□□□□□ -2.23
CTCFP49711 SNORD115-43-201ENST00000365503 82 ntBASIC1.13□□□□□ -2.23
CTCFP49711 SNORD115-36-201ENST00000365629 82 ntBASIC1.13□□□□□ -2.23
CTCFP49711 SNORA24-201ENST00000384096 131 ntBASIC1.13□□□□□ -2.23
CTCFP49711 RNU7-90P-201ENST00000459216 62 ntBASIC1.13□□□□□ -2.23
CTCFP49711 RNU6-111P-201ENST00000517179 105 ntBASIC1.13□□□□□ -2.23
CTCFP49711 MIR548AO-201ENST00000579992 96 ntBASIC1.13□□□□□ -2.23
CTCFP49711 MIR4661-201ENST00000582720 75 ntBASIC1.13□□□□□ -2.23
CTCFP49711 SNORD115-40-201ENST00000606510 82 ntBASIC1.13□□□□□ -2.23
CTCFP49711 AC243994.1-201ENST00000618627 109 ntBASIC1.13□□□□□ -2.23
CTCFP49711 Y_RNA.199-201ENST00000364014 102 ntBASIC1.12□□□□□ -2.23
CTCFP49711 Y_RNA.241-201ENST00000364470 117 ntBASIC1.12□□□□□ -2.23
CTCFP49711 RPS29P28-201ENST00000446439 141 ntBASIC1.12□□□□□ -2.23
CTCFP49711 RNU4-71P-201ENST00000516258 113 ntBASIC1.12□□□□□ -2.23
CTCFP49711 RNU6-197P-201ENST00000516680 100 ntBASIC1.12□□□□□ -2.23
CTCFP49711 AC040936.1-201ENST00000534543 172 ntTSL 5 BASIC1.12□□□□□ -2.23
CTCFP49711 AC004817.2-201ENST00000561794 651 ntBASIC1.12□□□□□ -2.23
CTCFP49711 AC032019.2-201ENST00000584916 403 ntTSL 5 BASIC1.12□□□□□ -2.23
CTCFP49711 MIR200A-201ENST00000384875 90 ntBASIC1.11□□□□□ -2.23
CTCFP49711 RNU6-493P-201ENST00000391321 108 ntBASIC1.11□□□□□ -2.23
CTCFP49711 RNU4-43P-201ENST00000410628 137 ntBASIC1.11□□□□□ -2.23
CTCFP49711 AF228730.3-201ENST00000436691 102 ntBASIC1.11□□□□□ -2.23
CTCFP49711 SNORA18.4-201ENST00000516440 124 ntBASIC1.11□□□□□ -2.23
CTCFP49711 SNORD36C-201ENST00000516733 66 ntBASIC1.11□□□□□ -2.23
CTCFP49711 AP003484.1-201ENST00000530974 250 ntBASIC1.11□□□□□ -2.23
CTCFP49711 AC133485.1-201ENST00000567176 124 ntBASIC1.11□□□□□ -2.23
CTCFP49711 AC138907.6-201ENST00000568401 126 ntBASIC1.11□□□□□ -2.23
CTCFP49711 PNRC2-204ENST00000579103 171 ntTSL 2 BASIC1.11□□□□□ -2.23
CTCFP49711 MIR4308-201ENST00000580634 81 ntBASIC1.11□□□□□ -2.23
CTCFP49711 MIR4744-201ENST00000581563 82 ntBASIC1.11□□□□□ -2.23
CTCFP49711 AP000942.4-201ENST00000604811 241 ntBASIC1.11□□□□□ -2.23
CTCFP49711 AC108706.1-201ENST00000611053 297 ntBASIC1.11□□□□□ -2.23
CTCFP49711 AC134878.1-201ENST00000619901 243 ntBASIC1.11□□□□□ -2.23
CTCFP49711 MIR6516-201ENST00000630554 81 ntBASIC1.11□□□□□ -2.23
CTCFP49711 Y_RNA.23-201ENST00000362496 106 ntBASIC1.1□□□□□ -2.23
CTCFP49711 SNORA20.1-201ENST00000364790 130 ntBASIC1.1□□□□□ -2.23
CTCFP49711 Y_RNA.330-201ENST00000365230 109 ntBASIC1.1□□□□□ -2.23
CTCFP49711 RNU6-728P-201ENST00000365375 104 ntBASIC1.1□□□□□ -2.23
CTCFP49711 Y_RNA.412-201ENST00000384001 104 ntBASIC1.1□□□□□ -2.23
CTCFP49711 SNORA40.5-201ENST00000391061 128 ntBASIC1.1□□□□□ -2.23
CTCFP49711 AC004941.2-201ENST00000427009 228 ntBASIC1.1□□□□□ -2.23
CTCFP49711 SNORD124-201ENST00000459577 104 ntBASIC1.1□□□□□ -2.23
CTCFP49711 DEFB131B-201ENST00000530210 213 ntAPPRIS P1 TSL 1 (best) BASIC1.1□□□□□ -2.23
CTCFP49711 MIR4698-201ENST00000577795 80 ntBASIC1.1□□□□□ -2.23
CTCFP49711 ZNF518A-210ENST00000624776 7994 ntAPPRIS P1 TSL 1 (best) BASIC1.1□□□□□ -2.23
CTCFP49711 ZNF732-201ENST00000419098 2193 ntAPPRIS P2 TSL 2 BASIC1.1□□□□□ -2.23
CTCFP49711 RNU6-923P-201ENST00000364753 107 ntBASIC1.09□□□□□ -2.23
CTCFP49711 RNA5SP193-201ENST00000410353 107 ntBASIC1.09□□□□□ -2.23
CTCFP49711 AC107297.1-201ENST00000459991 176 ntBASIC1.09□□□□□ -2.23
CTCFP49711 AC131055.1-201ENST00000584626 316 ntBASIC1.09□□□□□ -2.23
CTCFP49711 RNU2-4P-201ENST00000606190 192 ntBASIC1.09□□□□□ -2.23
CTCFP49711 AC103810.9-201ENST00000606688 112 ntBASIC1.09□□□□□ -2.23
CTCFP49711 DEFB131A-201ENST00000334879 213 ntAPPRIS P1 TSL 1 (best) BASIC1.08□□□□□ -2.24
CTCFP49711 Y_RNA.7-201ENST00000362352 102 ntBASIC1.08□□□□□ -2.24
CTCFP49711 RNU6-654P-201ENST00000364373 107 ntBASIC1.08□□□□□ -2.24
CTCFP49711 SNORD114-24-201ENST00000365029 72 ntBASIC1.08□□□□□ -2.24
CTCFP49711 SNORA1-201ENST00000384107 130 ntBASIC1.08□□□□□ -2.24
CTCFP49711 RNU6-578P-201ENST00000390980 103 ntBASIC1.08□□□□□ -2.24
CTCFP49711 RNA5SP285-201ENST00000516619 119 ntBASIC1.08□□□□□ -2.24
CTCFP49711 MIR4711-201ENST00000578274 70 ntBASIC1.08□□□□□ -2.24
CTCFP49711 ZGRF1-202ENST00000309071 3347 ntTSL 1 (best) BASIC1.07□□□□□ -2.24
CTCFP49711 Y_RNA.121-201ENST00000363309 113 ntBASIC1.07□□□□□ -2.24
CTCFP49711 RNU1-36P-201ENST00000365130 165 ntBASIC1.07□□□□□ -2.24
CTCFP49711 SNORA27-201ENST00000384323 126 ntBASIC1.07□□□□□ -2.24
CTCFP49711 RNU6-613P-201ENST00000410412 108 ntBASIC1.07□□□□□ -2.24
CTCFP49711 snoU13.16-201ENST00000459350 104 ntBASIC1.07□□□□□ -2.24
CTCFP49711 AC090155.2-201ENST00000518854 267 ntTSL 3 BASIC1.07□□□□□ -2.24
CTCFP49711 AC023827.1-201ENST00000569247 97 ntBASIC1.07□□□□□ -2.24
CTCFP49711 MIR2909-201ENST00000617113 69 ntBASIC1.07□□□□□ -2.24
CTCFP49711 Y_RNA.410-201ENST00000383992 113 ntBASIC1.06□□□□□ -2.24
CTCFP49711 Y_RNA.571-201ENST00000384753 98 ntBASIC1.06□□□□□ -2.24
CTCFP49711 SNORD77.3-201ENST00000391113 65 ntBASIC1.06□□□□□ -2.24
CTCFP49711 AL121914.1-201ENST00000450188 156 ntBASIC1.06□□□□□ -2.24
CTCFP49711 RNU7-67P-201ENST00000459003 62 ntBASIC1.06□□□□□ -2.24
Retrieved 100 of 98,524 protein–RNA pairs in 109.2 ms