Protein–RNA interactions for Protein: P48742

LHX1, LIM/homeobox protein Lhx1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX1P48742 Y_RNA.308-201ENST00000365043 101 ntBASIC0.79□□□□□ -2.28
LHX1P48742 Y_RNA.350-201ENST00000365409 98 ntBASIC0.79□□□□□ -2.28
LHX1P48742 RNU6-1335P-201ENST00000365426 107 ntBASIC0.79□□□□□ -2.28
LHX1P48742 RNU6-42P-201ENST00000384165 107 ntBASIC0.79□□□□□ -2.28
LHX1P48742 RNU6-913P-201ENST00000390913 95 ntBASIC0.79□□□□□ -2.28
LHX1P48742 RNU6ATAC27P-201ENST00000408289 119 ntBASIC0.79□□□□□ -2.28
LHX1P48742 AC023051.1-201ENST00000414098 876 ntTSL 5 BASIC0.79□□□□□ -2.28
LHX1P48742 AC090844.1-201ENST00000422019 156 ntBASIC0.79□□□□□ -2.28
LHX1P48742 AC025627.3-201ENST00000582078 182 ntBASIC0.79□□□□□ -2.28
LHX1P48742 AC013244.2-201ENST00000603396 103 ntBASIC0.79□□□□□ -2.28
LHX1P48742 MIR6835-201ENST00000621552 64 ntBASIC0.79□□□□□ -2.28
LHX1P48742 EVI2B-201ENST00000330927 1999 ntAPPRIS P1 TSL 1 (best) BASIC0.79□□□□□ -2.28
LHX1P48742 MIR1-1-201ENST00000362147 71 ntBASIC0.78□□□□□ -2.28
LHX1P48742 RNY4P28-201ENST00000365281 93 ntBASIC0.78□□□□□ -2.28
LHX1P48742 Y_RNA.355-201ENST00000365462 98 ntBASIC0.78□□□□□ -2.28
LHX1P48742 SNORA1-201ENST00000384107 130 ntBASIC0.78□□□□□ -2.28
LHX1P48742 SNORD38B-201ENST00000384690 67 ntBASIC0.78□□□□□ -2.28
LHX1P48742 TRAJ2-201ENST00000390535 66 ntAPPRIS P1 BASIC0.78□□□□□ -2.28
LHX1P48742 AL138752.1-201ENST00000452964 351 ntBASIC0.78□□□□□ -2.28
LHX1P48742 PSMC1P5-201ENST00000512850 177 ntBASIC0.78□□□□□ -2.28
LHX1P48742 RNY3P16-201ENST00000516338 101 ntBASIC0.78□□□□□ -2.28
LHX1P48742 AC010177.1-201ENST00000547819 366 ntTSL 3 BASIC0.78□□□□□ -2.28
LHX1P48742 MIR4744-201ENST00000581563 82 ntBASIC0.78□□□□□ -2.28
LHX1P48742 AC062037.2-201ENST00000610137 73 ntBASIC0.78□□□□□ -2.28
LHX1P48742 U4.1-201ENST00000620349 87 ntBASIC0.78□□□□□ -2.28
LHX1P48742 SNORD38B-202ENST00000625943 69 ntBASIC0.78□□□□□ -2.28
LHX1P48742 Y_RNA.7-201ENST00000362352 102 ntBASIC0.77□□□□□ -2.29
LHX1P48742 Y_RNA.20-201ENST00000362479 113 ntBASIC0.77□□□□□ -2.29
LHX1P48742 Y_RNA.269-201ENST00000364685 89 ntBASIC0.77□□□□□ -2.29
LHX1P48742 RNU6-580P-201ENST00000365159 107 ntBASIC0.77□□□□□ -2.29
LHX1P48742 Y_RNA.440-201ENST00000384120 114 ntBASIC0.77□□□□□ -2.29
LHX1P48742 Y_RNA.478-201ENST00000384358 107 ntBASIC0.77□□□□□ -2.29
LHX1P48742 MIR146A-201ENST00000385201 99 ntBASIC0.77□□□□□ -2.29
LHX1P48742 SNORD77.3-201ENST00000391113 65 ntBASIC0.77□□□□□ -2.29
LHX1P48742 RNU6-493P-201ENST00000391321 108 ntBASIC0.77□□□□□ -2.29
LHX1P48742 MIR1827-201ENST00000408549 66 ntBASIC0.77□□□□□ -2.29
LHX1P48742 RNU4-43P-201ENST00000410628 137 ntBASIC0.77□□□□□ -2.29
LHX1P48742 MTND3P2-201ENST00000438452 342 ntBASIC0.77□□□□□ -2.29
LHX1P48742 AL121914.1-201ENST00000450188 156 ntBASIC0.77□□□□□ -2.29
LHX1P48742 RNU2-11P-201ENST00000459191 187 ntBASIC0.77□□□□□ -2.29
LHX1P48742 RNU6-998P-201ENST00000515894 101 ntBASIC0.77□□□□□ -2.29
LHX1P48742 AL353765.1-201ENST00000605514 183 ntBASIC0.77□□□□□ -2.29
LHX1P48742 MIR8055-201ENST00000610739 97 ntBASIC0.77□□□□□ -2.29
LHX1P48742 RMST_2.1-201ENST00000617263 136 ntBASIC0.77□□□□□ -2.29
LHX1P48742 MIR6734-201ENST00000621166 68 ntBASIC0.77□□□□□ -2.29
LHX1P48742 Z97988.1-201ENST00000637697 135 ntBASIC0.77□□□□□ -2.29
LHX1P48742 CXADR-202ENST00000356275 270 ntTSL 1 (best) BASIC0.76□□□□□ -2.29
LHX1P48742 MIR342-201ENST00000362212 99 ntBASIC0.76□□□□□ -2.29
LHX1P48742 SNORA1.1-201ENST00000364671 133 ntBASIC0.76□□□□□ -2.29
LHX1P48742 Y_RNA.508-201ENST00000384502 114 ntBASIC0.76□□□□□ -2.29
LHX1P48742 Y_RNA.542-201ENST00000384641 111 ntBASIC0.76□□□□□ -2.29
LHX1P48742 MIR605-201ENST00000385078 83 ntBASIC0.76□□□□□ -2.29
LHX1P48742 MIR100-201ENST00000385259 80 ntBASIC0.76□□□□□ -2.29
LHX1P48742 MIR548I3-201ENST00000408378 149 ntBASIC0.76□□□□□ -2.29
LHX1P48742 AC244023.1-201ENST00000426884 112 ntBASIC0.76□□□□□ -2.29
LHX1P48742 RNU7-62P-201ENST00000458856 62 ntBASIC0.76□□□□□ -2.29
LHX1P48742 AC113410.1-201ENST00000505029 247 ntBASIC0.76□□□□□ -2.29
LHX1P48742 MTND1P19-201ENST00000511780 315 ntBASIC0.76□□□□□ -2.29
LHX1P48742 MIR5000-201ENST00000577717 103 ntBASIC0.76□□□□□ -2.29
LHX1P48742 MIR3129-201ENST00000581095 76 ntBASIC0.76□□□□□ -2.29
LHX1P48742 AC242498.1-201ENST00000604134 111 ntBASIC0.76□□□□□ -2.29
LHX1P48742 AC023934.1-201ENST00000574529 2389 ntBASIC0.76□□□□□ -2.29
LHX1P48742 RNU6-196P-201ENST00000384315 107 ntBASIC0.75□□□□□ -2.29
LHX1P48742 Y_RNA.539-201ENST00000384635 107 ntBASIC0.75□□□□□ -2.29
LHX1P48742 RNU6-578P-201ENST00000390980 103 ntBASIC0.75□□□□□ -2.29
LHX1P48742 SNORD99-201ENST00000408612 74 ntBASIC0.75□□□□□ -2.29
LHX1P48742 HMGN1P33-201ENST00000432945 451 ntBASIC0.75□□□□□ -2.29
LHX1P48742 AC133485.1-201ENST00000567176 124 ntBASIC0.75□□□□□ -2.29
LHX1P48742 AC138907.6-201ENST00000568401 126 ntBASIC0.75□□□□□ -2.29
LHX1P48742 MIR3128-201ENST00000581957 66 ntBASIC0.75□□□□□ -2.29
LHX1P48742 AL590095.2-201ENST00000604136 117 ntBASIC0.75□□□□□ -2.29
LHX1P48742 RNU2-4P-201ENST00000606190 192 ntBASIC0.75□□□□□ -2.29
LHX1P48742 AC099654.10-201ENST00000640395 161 ntBASIC0.75□□□□□ -2.29
LHX1P48742 MIR302B-201ENST00000362188 73 ntBASIC0.74□□□□□ -2.29
LHX1P48742 RNU6-923P-201ENST00000364753 107 ntBASIC0.74□□□□□ -2.29
LHX1P48742 RNU6-702P-201ENST00000364982 107 ntBASIC0.74□□□□□ -2.29
LHX1P48742 SNORD58.1-201ENST00000391313 66 ntBASIC0.74□□□□□ -2.29
LHX1P48742 Y_RNA.626-201ENST00000411288 95 ntBASIC0.74□□□□□ -2.29
LHX1P48742 AL135790.1-201ENST00000427161 157 ntTSL 3 BASIC0.74□□□□□ -2.29
LHX1P48742 snoU13.21-201ENST00000459368 105 ntBASIC0.74□□□□□ -2.29
LHX1P48742 snoU13.18-201ENST00000459483 104 ntBASIC0.74□□□□□ -2.29
LHX1P48742 Y_RNA.797-201ENST00000515977 94 ntBASIC0.74□□□□□ -2.29
LHX1P48742 AC022709.1-201ENST00000615967 87 ntBASIC0.74□□□□□ -2.29
LHX1P48742 DEFB131A-201ENST00000334879 213 ntAPPRIS P1 TSL 1 (best) BASIC0.73□□□□□ -2.29
LHX1P48742 Y_RNA.121-201ENST00000363309 113 ntBASIC0.73□□□□□ -2.29
LHX1P48742 RNU6-934P-201ENST00000365154 107 ntBASIC0.73□□□□□ -2.29
LHX1P48742 Y_RNA.351-201ENST00000365436 96 ntBASIC0.73□□□□□ -2.29
LHX1P48742 MIR508-201ENST00000384857 115 ntBASIC0.73□□□□□ -2.29
LHX1P48742 Y_RNA.618-201ENST00000410949 107 ntBASIC0.73□□□□□ -2.29
LHX1P48742 SNORD83.1-201ENST00000411362 77 ntBASIC0.73□□□□□ -2.29
LHX1P48742 RNU4-71P-201ENST00000516258 113 ntBASIC0.73□□□□□ -2.29
LHX1P48742 SNORD116-25-201ENST00000516517 92 ntBASIC0.73□□□□□ -2.29
LHX1P48742 MIR4503-201ENST00000582187 83 ntBASIC0.73□□□□□ -2.29
LHX1P48742 MIR5197-201ENST00000583721 112 ntBASIC0.73□□□□□ -2.29
LHX1P48742 AL365205.2-201ENST00000594586 68 ntBASIC0.73□□□□□ -2.29
LHX1P48742 AC104465.1-201ENST00000611365 139 ntBASIC0.73□□□□□ -2.29
LHX1P48742 Y_RNA.60-201ENST00000362831 98 ntBASIC0.72□□□□□ -2.29
LHX1P48742 SNORA20.1-201ENST00000364790 130 ntBASIC0.72□□□□□ -2.29
LHX1P48742 RNU6-1292P-201ENST00000383856 107 ntBASIC0.72□□□□□ -2.29
LHX1P48742 SNORD105-201ENST00000386910 85 ntBASIC0.72□□□□□ -2.29
Retrieved 100 of 98,524 protein–RNA pairs in 111.8 ms