Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 RNA5SP517-201ENST00000364724 117 ntBASIC0.17□□□□□ -2.38
RFX3P48380 RNA5SP117-201ENST00000365294 118 ntBASIC0.17□□□□□ -2.38
RFX3P48380 SNORD61-201ENST00000384252 73 ntBASIC0.17□□□□□ -2.38
RFX3P48380 Y_RNA.476-201ENST00000384347 108 ntBASIC0.17□□□□□ -2.38
RFX3P48380 MIR548I3-201ENST00000408378 149 ntBASIC0.17□□□□□ -2.38
RFX3P48380 Y_RNA.641-201ENST00000459414 105 ntBASIC0.17□□□□□ -2.38
RFX3P48380 RNU6-998P-201ENST00000515894 101 ntBASIC0.17□□□□□ -2.38
RFX3P48380 SNORA40.15-201ENST00000516884 107 ntBASIC0.17□□□□□ -2.38
RFX3P48380 AC126177.2-201ENST00000552154 452 ntTSL 3 BASIC0.17□□□□□ -2.38
RFX3P48380 MIR4801-201ENST00000582704 82 ntBASIC0.17□□□□□ -2.38
RFX3P48380 AC008608.1-201ENST00000603910 127 ntBASIC0.17□□□□□ -2.38
RFX3P48380 RNU6-349P-201ENST00000362402 107 ntBASIC0.16□□□□□ -2.38
RFX3P48380 Y_RNA.276-201ENST00000364732 109 ntBASIC0.16□□□□□ -2.38
RFX3P48380 Y_RNA.389-201ENST00000383924 113 ntBASIC0.16□□□□□ -2.38
RFX3P48380 RNU6ATAC4P-201ENST00000387446 126 ntBASIC0.16□□□□□ -2.38
RFX3P48380 AC022028.1-201ENST00000412054 408 ntBASIC0.16□□□□□ -2.38
RFX3P48380 AL731563.1-201ENST00000442202 214 ntBASIC0.16□□□□□ -2.38
RFX3P48380 AC068658.1-201ENST00000507509 388 ntTSL 2 BASIC0.16□□□□□ -2.38
RFX3P48380 RNU6-1143P-201ENST00000516125 104 ntBASIC0.16□□□□□ -2.38
RFX3P48380 SNORD36C-201ENST00000516733 66 ntBASIC0.16□□□□□ -2.38
RFX3P48380 RNU6-448P-201ENST00000517052 107 ntBASIC0.16□□□□□ -2.38
RFX3P48380 AC004148.1-201ENST00000571506 398 ntTSL 5 BASIC0.16□□□□□ -2.38
RFX3P48380 AC006006.1-201ENST00000603082 144 ntBASIC0.16□□□□□ -2.38
RFX3P48380 SNORA25.18-201ENST00000607153 114 ntBASIC0.16□□□□□ -2.38
RFX3P48380 AC135050.6-201ENST00000610813 528 ntTSL 3 BASIC0.16□□□□□ -2.38
RFX3P48380 5S_rRNA.15-201ENST00000611169 127 ntBASIC0.16□□□□□ -2.38
RFX3P48380 UBE2WP1-201ENST00000362030 340 ntBASIC0.15□□□□□ -2.39
RFX3P48380 RNU6-1099P-201ENST00000363533 107 ntBASIC0.15□□□□□ -2.39
RFX3P48380 SNORA8.3-201ENST00000384679 139 ntBASIC0.15□□□□□ -2.39
RFX3P48380 MIR1295A-201ENST00000408463 79 ntBASIC0.15□□□□□ -2.39
RFX3P48380 RNA5SP261-201ENST00000410536 106 ntBASIC0.15□□□□□ -2.39
RFX3P48380 HMGN1P33-201ENST00000432945 451 ntBASIC0.15□□□□□ -2.39
RFX3P48380 SNRPGP12-201ENST00000449481 213 ntBASIC0.15□□□□□ -2.39
RFX3P48380 RNU2-11P-201ENST00000459191 187 ntBASIC0.15□□□□□ -2.39
RFX3P48380 MIR4431-201ENST00000579990 94 ntBASIC0.15□□□□□ -2.39
RFX3P48380 NEAT1_2.1-201ENST00000620525 105 ntBASIC0.15□□□□□ -2.39
RFX3P48380 G3BP1-214ENST00000627077 114 ntTSL 5 BASIC0.15□□□□□ -2.39
RFX3P48380 MIR369-201ENST00000362155 70 ntBASIC0.14□□□□□ -2.39
RFX3P48380 MIR30D-201ENST00000362283 70 ntBASIC0.14□□□□□ -2.39
RFX3P48380 Y_RNA.28-201ENST00000362554 111 ntBASIC0.14□□□□□ -2.39
RFX3P48380 RNA5SP257-201ENST00000363023 116 ntBASIC0.14□□□□□ -2.39
RFX3P48380 RNU6-1309P-201ENST00000363305 108 ntBASIC0.14□□□□□ -2.39
RFX3P48380 SNORD118-201ENST00000363593 134 ntBASIC0.14□□□□□ -2.39
RFX3P48380 Y_RNA.251-201ENST00000364551 99 ntBASIC0.14□□□□□ -2.39
RFX3P48380 RNU6-1189P-201ENST00000383958 107 ntBASIC0.14□□□□□ -2.39
RFX3P48380 RNY3P5-201ENST00000384127 102 ntBASIC0.14□□□□□ -2.39
RFX3P48380 RNU6-662P-201ENST00000384253 104 ntBASIC0.14□□□□□ -2.39
RFX3P48380 RNU6-121P-201ENST00000410525 99 ntBASIC0.14□□□□□ -2.39
RFX3P48380 AL583859.1-201ENST00000455871 335 ntTSL 3 BASIC0.14□□□□□ -2.39
RFX3P48380 RNU6-1299P-201ENST00000516316 100 ntBASIC0.14□□□□□ -2.39
RFX3P48380 RNA5SP153-201ENST00000516498 76 ntBASIC0.14□□□□□ -2.39
RFX3P48380 RNU6-1270P-201ENST00000517128 108 ntBASIC0.14□□□□□ -2.39
RFX3P48380 MIR3678-201ENST00000578455 94 ntBASIC0.14□□□□□ -2.39
RFX3P48380 AL008718.3-201ENST00000610217 321 ntBASIC0.14□□□□□ -2.39
RFX3P48380 VPS35-212ENST00000640313 141 ntTSL 5 BASIC0.14□□□□□ -2.39
RFX3P48380 Y_RNA.66-201ENST00000362862 102 ntBASIC0.13□□□□□ -2.39
RFX3P48380 snoU2_19.2-201ENST00000363024 80 ntBASIC0.13□□□□□ -2.39
RFX3P48380 RNU6-770P-201ENST00000363929 105 ntBASIC0.13□□□□□ -2.39
RFX3P48380 Y_RNA.394-201ENST00000383942 103 ntBASIC0.13□□□□□ -2.39
RFX3P48380 SNORA8.2-201ENST00000384372 139 ntBASIC0.13□□□□□ -2.39
RFX3P48380 Y_RNA.541-201ENST00000384640 113 ntBASIC0.13□□□□□ -2.39
RFX3P48380 RNU6-988P-201ENST00000519081 107 ntBASIC0.13□□□□□ -2.39
RFX3P48380 AC131281.1-201ENST00000522984 164 ntBASIC0.13□□□□□ -2.39
RFX3P48380 Y_RNA.804-201ENST00000615262 101 ntBASIC0.13□□□□□ -2.39
RFX3P48380 AC078938.1-201ENST00000620993 318 ntBASIC0.13□□□□□ -2.39
RFX3P48380 snoU18.1-201ENST00000629629 71 ntBASIC0.13□□□□□ -2.39
RFX3P48380 Y_RNA.105-201ENST00000363182 111 ntBASIC0.12□□□□□ -2.39
RFX3P48380 RNA5SP62-201ENST00000363457 110 ntBASIC0.12□□□□□ -2.39
RFX3P48380 RNU6-450P-201ENST00000364654 107 ntBASIC0.12□□□□□ -2.39
RFX3P48380 Y_RNA.440-201ENST00000384120 114 ntBASIC0.12□□□□□ -2.39
RFX3P48380 RNY3P14-201ENST00000384309 102 ntBASIC0.12□□□□□ -2.39
RFX3P48380 MIR626-201ENST00000385032 94 ntBASIC0.12□□□□□ -2.39
RFX3P48380 SNORD12C-201ENST00000386307 89 ntBASIC0.12□□□□□ -2.39
RFX3P48380 AF228730.3-201ENST00000436691 102 ntBASIC0.12□□□□□ -2.39
RFX3P48380 AC097639.2-201ENST00000603159 172 ntBASIC0.12□□□□□ -2.39
RFX3P48380 MIR4315-1-201ENST00000636800 73 ntBASIC0.12□□□□□ -2.39
RFX3P48380 MIR4315-2-201ENST00000640925 73 ntBASIC0.12□□□□□ -2.39
RFX3P48380 MIR302B-201ENST00000362188 73 ntBASIC0.11□□□□□ -2.39
RFX3P48380 Y_RNA.7-201ENST00000362352 102 ntBASIC0.11□□□□□ -2.39
RFX3P48380 Y_RNA.31-201ENST00000362574 102 ntBASIC0.11□□□□□ -2.39
RFX3P48380 Y_RNA.152-201ENST00000363578 100 ntBASIC0.11□□□□□ -2.39
RFX3P48380 Y_RNA.229-201ENST00000364347 113 ntBASIC0.11□□□□□ -2.39
RFX3P48380 RNA5SP299-201ENST00000391203 116 ntBASIC0.11□□□□□ -2.39
RFX3P48380 KCNQ1OT1_5.1-201ENST00000621902 226 ntBASIC0.11□□□□□ -2.39
RFX3P48380 MIR6717-201ENST00000622747 73 ntBASIC0.11□□□□□ -2.39
RFX3P48380 Y_RNA.24-201ENST00000362508 103 ntBASIC0.1□□□□□ -2.39
RFX3P48380 RNU6-653P-201ENST00000363074 106 ntBASIC0.1□□□□□ -2.39
RFX3P48380 Y_RNA.214-201ENST00000364201 112 ntBASIC0.1□□□□□ -2.39
RFX3P48380 Y_RNA.634-201ENST00000364811 113 ntBASIC0.1□□□□□ -2.39
RFX3P48380 RNU6-815P-201ENST00000384080 113 ntBASIC0.1□□□□□ -2.39
RFX3P48380 Y_RNA.432-201ENST00000384087 111 ntBASIC0.1□□□□□ -2.39
RFX3P48380 Y_RNA.567-201ENST00000384736 106 ntBASIC0.1□□□□□ -2.39
RFX3P48380 AL138752.1-201ENST00000452964 351 ntBASIC0.1□□□□□ -2.39
RFX3P48380 RNU6-469P-201ENST00000516253 101 ntBASIC0.1□□□□□ -2.39
RFX3P48380 MIR6718-201ENST00000616153 80 ntBASIC0.1□□□□□ -2.39
RFX3P48380 Y_RNA.19-201ENST00000362462 99 ntBASIC0.09□□□□□ -2.4
RFX3P48380 RNU4-10P-201ENST00000364383 140 ntBASIC0.09□□□□□ -2.4
RFX3P48380 RNU6-484P-201ENST00000384016 107 ntBASIC0.09□□□□□ -2.4
RFX3P48380 RNU6-211P-201ENST00000384047 107 ntBASIC0.09□□□□□ -2.4
RFX3P48380 SNORA26.6-201ENST00000391256 115 ntBASIC0.09□□□□□ -2.4
Retrieved 100 of 98,524 protein–RNA pairs in 129.6 ms