Protein–RNA interactions for Protein: P48059

LIMS1, LIM and senescent cell antigen-like-containing domain protein 1, humanhuman

Predictions only

Length 325 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1P48059 RNU6-1201P-201ENST00000384227 107 ntBASIC2.18□□□□□ -2.06
LIMS1P48059 RNU11-3P-201ENST00000391111 133 ntBASIC2.18□□□□□ -2.06
LIMS1P48059 RNU6-644P-201ENST00000391155 98 ntBASIC2.18□□□□□ -2.06
LIMS1P48059 AL359511.1-201ENST00000402970 211 ntBASIC2.18□□□□□ -2.06
LIMS1P48059 RNU4ATAC16P-201ENST00000408512 126 ntBASIC2.18□□□□□ -2.06
LIMS1P48059 AC035139.1-201ENST00000423256 273 ntTSL 3 BASIC2.18□□□□□ -2.06
LIMS1P48059 snoU13.26-201ENST00000459452 105 ntBASIC2.18□□□□□ -2.06
LIMS1P48059 RNU6-795P-201ENST00000516323 103 ntBASIC2.18□□□□□ -2.06
LIMS1P48059 AC021506.2-201ENST00000612354 169 ntBASIC2.18□□□□□ -2.06
LIMS1P48059 AL513423.1-201ENST00000621695 132 ntBASIC2.18□□□□□ -2.06
LIMS1P48059 MIR6717-201ENST00000622747 73 ntBASIC2.18□□□□□ -2.06
LIMS1P48059 MIR1291-201ENST00000627649 87 ntBASIC2.18□□□□□ -2.06
LIMS1P48059 KTN1-207ENST00000438792 4449 ntAPPRIS ALT2 TSL 5 BASIC2.18□□□□□ -2.06
LIMS1P48059 MIR494-201ENST00000349529 81 ntBASIC2.17□□□□□ -2.06
LIMS1P48059 Y_RNA.17-201ENST00000362433 111 ntBASIC2.17□□□□□ -2.06
LIMS1P48059 Y_RNA.219-201ENST00000364232 113 ntBASIC2.17□□□□□ -2.06
LIMS1P48059 RNU6-616P-201ENST00000384353 107 ntBASIC2.17□□□□□ -2.06
LIMS1P48059 RNU6-296P-201ENST00000384608 107 ntBASIC2.17□□□□□ -2.06
LIMS1P48059 MIR526A1-201ENST00000384897 85 ntBASIC2.17□□□□□ -2.06
LIMS1P48059 MIR518A2-201ENST00000384966 87 ntBASIC2.17□□□□□ -2.06
LIMS1P48059 RNA5SP261-201ENST00000410536 106 ntBASIC2.17□□□□□ -2.06
LIMS1P48059 HMGN2P3-201ENST00000433603 273 ntBASIC2.17□□□□□ -2.06
LIMS1P48059 HMGN2P5-201ENST00000436882 273 ntBASIC2.17□□□□□ -2.06
LIMS1P48059 AC108752.1-201ENST00000484679 576 ntTSL 5 BASIC2.17□□□□□ -2.06
LIMS1P48059 AC099513.1-201ENST00000490423 301 ntBASIC2.17□□□□□ -2.06
LIMS1P48059 DNAJC19P9-201ENST00000555084 351 ntBASIC2.17□□□□□ -2.06
LIMS1P48059 MIR4777-201ENST00000583710 86 ntBASIC2.17□□□□□ -2.06
LIMS1P48059 AL020996.3-201ENST00000606617 222 ntBASIC2.17□□□□□ -2.06
LIMS1P48059 AC245884.12-201ENST00000615364 59 ntBASIC2.17□□□□□ -2.06
LIMS1P48059 U7.3-201ENST00000616123 62 ntBASIC2.17□□□□□ -2.06
LIMS1P48059 MIR7843-201ENST00000622274 79 ntBASIC2.17□□□□□ -2.06
LIMS1P48059 AC005336.3-201ENST00000623833 2679 ntBASIC2.17□□□□□ -2.06
LIMS1P48059 GPR22-201ENST00000304402 2942 ntAPPRIS P1 TSL 1 (best) BASIC2.16□□□□□ -2.06
LIMS1P48059 RNU6-112P-201ENST00000363599 104 ntBASIC2.16□□□□□ -2.06
LIMS1P48059 RNU1-91P-201ENST00000364746 163 ntBASIC2.16□□□□□ -2.06
LIMS1P48059 MIR520A-201ENST00000384862 85 ntBASIC2.16□□□□□ -2.06
LIMS1P48059 TRAJ50-201ENST00000390487 60 ntAPPRIS P1 BASIC2.16□□□□□ -2.06
LIMS1P48059 RNU6-913P-201ENST00000390913 95 ntBASIC2.16□□□□□ -2.06
LIMS1P48059 SNORD28B-201ENST00000390993 75 ntBASIC2.16□□□□□ -2.06
LIMS1P48059 SNORD77B-201ENST00000391112 67 ntBASIC2.16□□□□□ -2.06
LIMS1P48059 AL451046.2-201ENST00000403074 277 ntBASIC2.16□□□□□ -2.06
LIMS1P48059 RNU6-1190P-201ENST00000410811 104 ntBASIC2.16□□□□□ -2.06
LIMS1P48059 RNA5SP148-201ENST00000516527 94 ntBASIC2.16□□□□□ -2.06
LIMS1P48059 RNU6-958P-201ENST00000516995 106 ntBASIC2.16□□□□□ -2.06
LIMS1P48059 MIR548Z-201ENST00000584743 97 ntBASIC2.16□□□□□ -2.06
LIMS1P48059 AC091304.10-201ENST00000641554 121 ntBASIC2.16□□□□□ -2.06
LIMS1P48059 LIFR-201ENST00000263409 10089 ntAPPRIS P1 TSL 1 (best) BASIC2.16□□□□□ -2.06
LIMS1P48059 NAALADL2-203ENST00000454872 9865 ntAPPRIS P1 TSL 1 (best) BASIC2.16□□□□□ -2.06
LIMS1P48059 KPNA5-202ENST00000368564 11311 ntAPPRIS P1 TSL 1 (best) BASIC2.16□□□□□ -2.06
LIMS1P48059 ENAM-201ENST00000396073 5679 ntAPPRIS P1 TSL 1 (best) BASIC2.15□□□□□ -2.06
LIMS1P48059 TTK-202ENST00000369798 3010 ntAPPRIS P3 TSL 1 (best) BASIC2.15□□□□□ -2.06
LIMS1P48059 RNU6-1313P-201ENST00000362622 102 ntBASIC2.15□□□□□ -2.07
LIMS1P48059 RNU6-60P-201ENST00000364792 103 ntBASIC2.15□□□□□ -2.07
LIMS1P48059 MIR660-201ENST00000385235 97 ntBASIC2.15□□□□□ -2.07
LIMS1P48059 AC073127.1-201ENST00000447336 333 ntTSL 3 BASIC2.15□□□□□ -2.07
LIMS1P48059 AC093850.1-201ENST00000454121 251 ntBASIC2.15□□□□□ -2.07
LIMS1P48059 RNU7-67P-201ENST00000459003 62 ntBASIC2.15□□□□□ -2.07
LIMS1P48059 SNORD123-201ENST00000459473 70 ntBASIC2.15□□□□□ -2.07
LIMS1P48059 AC104435.1-201ENST00000483483 166 ntBASIC2.15□□□□□ -2.07
LIMS1P48059 RPL23AP63-201ENST00000498752 471 ntBASIC2.15□□□□□ -2.07
LIMS1P48059 AC026436.1-201ENST00000510537 270 ntBASIC2.15□□□□□ -2.07
LIMS1P48059 RNU1-41P-201ENST00000516161 162 ntBASIC2.15□□□□□ -2.07
LIMS1P48059 RNU1-48P-201ENST00000516400 162 ntBASIC2.15□□□□□ -2.07
LIMS1P48059 RNA5SP33-201ENST00000516687 98 ntBASIC2.15□□□□□ -2.07
LIMS1P48059 MIR4524B-201ENST00000581569 115 ntBASIC2.15□□□□□ -2.07
LIMS1P48059 MIR548AR-201ENST00000582191 57 ntBASIC2.15□□□□□ -2.07
LIMS1P48059 MIR6840-201ENST00000611937 71 ntBASIC2.15□□□□□ -2.07
LIMS1P48059 AC068631.1-220ENST00000630726 256 ntTSL 5 BASIC2.15□□□□□ -2.07
LIMS1P48059 AL596028.1-201ENST00000326971 197 ntBASIC2.14□□□□□ -2.07
LIMS1P48059 Y_RNA.95-201ENST00000363079 95 ntBASIC2.14□□□□□ -2.07
LIMS1P48059 SNORD114-30-201ENST00000364448 72 ntBASIC2.14□□□□□ -2.07
LIMS1P48059 SNORD45B-201ENST00000364617 72 ntBASIC2.14□□□□□ -2.07
LIMS1P48059 SNORD78.1-201ENST00000390866 65 ntBASIC2.14□□□□□ -2.07
LIMS1P48059 HMGN2P39-201ENST00000398005 273 ntBASIC2.14□□□□□ -2.07
LIMS1P48059 SNORA7.5-201ENST00000410672 110 ntBASIC2.14□□□□□ -2.07
LIMS1P48059 MRPL35P3-201ENST00000421557 364 ntBASIC2.14□□□□□ -2.07
LIMS1P48059 MIR4791-201ENST00000607666 84 ntBASIC2.14□□□□□ -2.07
LIMS1P48059 AC243994.1-201ENST00000618627 109 ntBASIC2.14□□□□□ -2.07
LIMS1P48059 TAB2-205ENST00000538427 4240 ntAPPRIS P1 TSL 5 BASIC2.13□□□□□ -2.07
LIMS1P48059 Y_RNA.96-201ENST00000363092 109 ntBASIC2.13□□□□□ -2.07
LIMS1P48059 RNU6-675P-201ENST00000384236 104 ntBASIC2.13□□□□□ -2.07
LIMS1P48059 SNORA18-201ENST00000384416 132 ntBASIC2.13□□□□□ -2.07
LIMS1P48059 Y_RNA.537-201ENST00000384626 109 ntBASIC2.13□□□□□ -2.07
LIMS1P48059 SNORA67.4-201ENST00000384688 142 ntBASIC2.13□□□□□ -2.07
LIMS1P48059 RNA5SP425-201ENST00000410336 112 ntBASIC2.13□□□□□ -2.07
LIMS1P48059 RNU7-34P-201ENST00000459394 64 ntBASIC2.13□□□□□ -2.07
LIMS1P48059 RNU6-521P-201ENST00000516663 105 ntBASIC2.13□□□□□ -2.07
LIMS1P48059 AC022254.1-201ENST00000567857 235 ntBASIC2.13□□□□□ -2.07
LIMS1P48059 MIR5007-201ENST00000583098 95 ntBASIC2.13□□□□□ -2.07
LIMS1P48059 AC025539.1-201ENST00000515343 4019 ntTSL 2 BASIC2.13□□□□□ -2.07
LIMS1P48059 AGL-204ENST00000370161 6923 ntTSL 5 BASIC2.12□□□□□ -2.07
LIMS1P48059 AC007370.2-201ENST00000506899 2694 ntTSL 5 BASIC2.12□□□□□ -2.07
LIMS1P48059 TDRD15-202ENST00000622654 5805 ntAPPRIS P1 BASIC2.12□□□□□ -2.07
LIMS1P48059 RNA5SP501-201ENST00000410990 112 ntBASIC2.12□□□□□ -2.07
LIMS1P48059 BTF3P4-201ENST00000418852 495 ntBASIC2.12□□□□□ -2.07
LIMS1P48059 snoU13.27-201ENST00000459278 104 ntBASIC2.12□□□□□ -2.07
LIMS1P48059 RNA5SP481-201ENST00000516814 122 ntBASIC2.12□□□□□ -2.07
LIMS1P48059 AC009093.3-203ENST00000565800 121 ntTSL 2 BASIC2.12□□□□□ -2.07
LIMS1P48059 MIR4709-201ENST00000577272 72 ntBASIC2.12□□□□□ -2.07
LIMS1P48059 MIR6766-201ENST00000622641 72 ntBASIC2.12□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 204.5 ms