Protein–RNA interactions for Protein: P35453

HOXD13, Homeobox protein Hox-D13, humanhuman

Predictions only

Length 343 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD13P35453 RNU2-11P-201ENST00000459191 187 ntBASIC0.7□□□□□ -2.3
HOXD13P35453 RNU6-998P-201ENST00000515894 101 ntBASIC0.7□□□□□ -2.3
HOXD13P35453 AC008737.2-201ENST00000599446 118 ntBASIC0.7□□□□□ -2.3
HOXD13P35453 MIR6788-201ENST00000618842 66 ntBASIC0.7□□□□□ -2.3
HOXD13P35453 Y_RNA.116-201ENST00000363292 103 ntBASIC0.69□□□□□ -2.3
HOXD13P35453 Y_RNA.149-201ENST00000363558 117 ntBASIC0.69□□□□□ -2.3
HOXD13P35453 snoU2_19.4-201ENST00000364329 80 ntBASIC0.69□□□□□ -2.3
HOXD13P35453 Y_RNA.518-201ENST00000384552 113 ntBASIC0.69□□□□□ -2.3
HOXD13P35453 Y_RNA.542-201ENST00000384641 111 ntBASIC0.69□□□□□ -2.3
HOXD13P35453 MT-TW-201ENST00000387382 68 ntBASIC0.69□□□□□ -2.3
HOXD13P35453 RNA5SP121-201ENST00000516537 101 ntBASIC0.69□□□□□ -2.3
HOXD13P35453 MIR4714-201ENST00000580728 77 ntBASIC0.69□□□□□ -2.3
HOXD13P35453 TTC28-AS1_2.1-201ENST00000611117 157 ntBASIC0.69□□□□□ -2.3
HOXD13P35453 RMST_2.1-201ENST00000617263 136 ntBASIC0.69□□□□□ -2.3
HOXD13P35453 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC0.69□□□□□ -2.3
HOXD13P35453 RNA5SP499-201ENST00000363982 119 ntBASIC0.68□□□□□ -2.3
HOXD13P35453 Y_RNA.440-201ENST00000384120 114 ntBASIC0.68□□□□□ -2.3
HOXD13P35453 TRAJ2-201ENST00000390535 66 ntAPPRIS P1 BASIC0.68□□□□□ -2.3
HOXD13P35453 RNU6-651P-201ENST00000411040 105 ntBASIC0.68□□□□□ -2.3
HOXD13P35453 AC012668.1-201ENST00000457625 228 ntTSL 3 BASIC0.68□□□□□ -2.3
HOXD13P35453 RNU7-80P-201ENST00000459562 61 ntBASIC0.68□□□□□ -2.3
HOXD13P35453 RNU6-453P-201ENST00000516819 85 ntBASIC0.68□□□□□ -2.3
HOXD13P35453 AC004148.1-201ENST00000571506 398 ntTSL 5 BASIC0.68□□□□□ -2.3
HOXD13P35453 SNORA4-201ENST00000584302 138 ntBASIC0.68□□□□□ -2.3
HOXD13P35453 Y_RNA.54-201ENST00000362766 105 ntBASIC0.67□□□□□ -2.3
HOXD13P35453 RNU4-45P-201ENST00000365469 141 ntBASIC0.67□□□□□ -2.3
HOXD13P35453 Y_RNA.416-201ENST00000384014 113 ntBASIC0.67□□□□□ -2.3
HOXD13P35453 Y_RNA.454-201ENST00000384224 113 ntBASIC0.67□□□□□ -2.3
HOXD13P35453 MIR588-201ENST00000384900 83 ntBASIC0.67□□□□□ -2.3
HOXD13P35453 MIR520H-201ENST00000385126 88 ntBASIC0.67□□□□□ -2.3
HOXD13P35453 RNU6-381P-201ENST00000391259 108 ntBASIC0.67□□□□□ -2.3
HOXD13P35453 MIR548F4-201ENST00000408515 105 ntBASIC0.67□□□□□ -2.3
HOXD13P35453 MIR548H3-201ENST00000408771 118 ntBASIC0.67□□□□□ -2.3
HOXD13P35453 AL138752.1-201ENST00000452964 351 ntBASIC0.67□□□□□ -2.3
HOXD13P35453 AC007991.2-201ENST00000520185 102 ntTSL 5 BASIC0.67□□□□□ -2.3
HOXD13P35453 AC018659.1-201ENST00000551083 169 ntBASIC0.67□□□□□ -2.3
HOXD13P35453 AL117187.1-201ENST00000555482 181 ntBASIC0.67□□□□□ -2.3
HOXD13P35453 OMD-201ENST00000375550 2449 ntAPPRIS P1 TSL 1 (best) BASIC0.67□□□□□ -2.3
HOXD13P35453 CXADR-202ENST00000356275 270 ntTSL 1 (best) BASIC0.66□□□□□ -2.3
HOXD13P35453 MIR342-201ENST00000362212 99 ntBASIC0.66□□□□□ -2.3
HOXD13P35453 RNU6-1309P-201ENST00000363305 108 ntBASIC0.66□□□□□ -2.3
HOXD13P35453 Y_RNA.351-201ENST00000365436 96 ntBASIC0.66□□□□□ -2.3
HOXD13P35453 SNORA36.2-201ENST00000384004 127 ntBASIC0.66□□□□□ -2.3
HOXD13P35453 Y_RNA.459-201ENST00000384251 102 ntBASIC0.66□□□□□ -2.3
HOXD13P35453 MIR573-201ENST00000384964 99 ntBASIC0.66□□□□□ -2.3
HOXD13P35453 RNU6-733P-201ENST00000410759 104 ntBASIC0.66□□□□□ -2.3
HOXD13P35453 Y_RNA.618-201ENST00000410949 107 ntBASIC0.66□□□□□ -2.3
HOXD13P35453 snoU13.21-201ENST00000459368 105 ntBASIC0.66□□□□□ -2.3
HOXD13P35453 MIR4676-201ENST00000583078 72 ntBASIC0.66□□□□□ -2.3
HOXD13P35453 MIR151B-201ENST00000584249 96 ntBASIC0.66□□□□□ -2.3
HOXD13P35453 AL442067.1-201ENST00000613261 223 ntBASIC0.66□□□□□ -2.3
HOXD13P35453 Y_RNA.288-201ENST00000364854 92 ntBASIC0.65□□□□□ -2.31
HOXD13P35453 Y_RNA.556-201ENST00000384677 113 ntBASIC0.65□□□□□ -2.31
HOXD13P35453 MIR938-201ENST00000401216 83 ntBASIC0.65□□□□□ -2.31
HOXD13P35453 RNU6-1165P-201ENST00000410119 107 ntBASIC0.65□□□□□ -2.31
HOXD13P35453 RNU6-602P-201ENST00000411155 105 ntBASIC0.65□□□□□ -2.31
HOXD13P35453 AL136320.1-201ENST00000417273 430 ntTSL 3 BASIC0.65□□□□□ -2.31
HOXD13P35453 snoU13.2-201ENST00000459201 104 ntBASIC0.65□□□□□ -2.31
HOXD13P35453 AC133485.1-201ENST00000567176 124 ntBASIC0.65□□□□□ -2.31
HOXD13P35453 AC138907.6-201ENST00000568401 126 ntBASIC0.65□□□□□ -2.31
HOXD13P35453 MIR4804-201ENST00000581683 73 ntBASIC0.65□□□□□ -2.31
HOXD13P35453 AL590095.2-201ENST00000604136 117 ntBASIC0.65□□□□□ -2.31
HOXD13P35453 DLEU2_5.2-201ENST00000610606 84 ntBASIC0.65□□□□□ -2.31
HOXD13P35453 RNU6-369P-201ENST00000362515 102 ntBASIC0.64□□□□□ -2.31
HOXD13P35453 RNU6-1292P-201ENST00000383856 107 ntBASIC0.64□□□□□ -2.31
HOXD13P35453 HMGN1P33-201ENST00000432945 451 ntBASIC0.64□□□□□ -2.31
HOXD13P35453 RNU4-54P-201ENST00000516428 129 ntBASIC0.64□□□□□ -2.31
HOXD13P35453 MIR5000-201ENST00000577717 103 ntBASIC0.64□□□□□ -2.31
HOXD13P35453 MIR3152-201ENST00000579801 74 ntBASIC0.64□□□□□ -2.31
HOXD13P35453 AC010332.2-201ENST00000613083 1904 ntBASIC0.64□□□□□ -2.31
HOXD13P35453 Y_RNA.47-201ENST00000362697 108 ntBASIC0.63□□□□□ -2.31
HOXD13P35453 RNU6-653P-201ENST00000363074 106 ntBASIC0.63□□□□□ -2.31
HOXD13P35453 Y_RNA.277-201ENST00000364754 102 ntBASIC0.63□□□□□ -2.31
HOXD13P35453 Y_RNA.355-201ENST00000365462 98 ntBASIC0.63□□□□□ -2.31
HOXD13P35453 RNU6-472P-201ENST00000384299 107 ntBASIC0.63□□□□□ -2.31
HOXD13P35453 MIR518E-201ENST00000385252 88 ntBASIC0.63□□□□□ -2.31
HOXD13P35453 AL135790.1-201ENST00000427161 157 ntTSL 3 BASIC0.63□□□□□ -2.31
HOXD13P35453 RNU7-70P-201ENST00000516941 66 ntBASIC0.63□□□□□ -2.31
HOXD13P35453 MIR4744-201ENST00000581563 82 ntBASIC0.63□□□□□ -2.31
HOXD13P35453 Y_RNA.23-201ENST00000362496 106 ntBASIC0.62□□□□□ -2.31
HOXD13P35453 Y_RNA.292-201ENST00000364904 97 ntBASIC0.62□□□□□ -2.31
HOXD13P35453 SNORA1-201ENST00000384107 130 ntBASIC0.62□□□□□ -2.31
HOXD13P35453 RNU6-364P-201ENST00000384387 107 ntBASIC0.62□□□□□ -2.31
HOXD13P35453 MT-TF-201ENST00000387314 71 ntBASIC0.62□□□□□ -2.31
HOXD13P35453 RNU6-1319P-201ENST00000390855 104 ntBASIC0.62□□□□□ -2.31
HOXD13P35453 RNU6-747P-201ENST00000390928 104 ntBASIC0.62□□□□□ -2.31
HOXD13P35453 RNU6-241P-201ENST00000391148 104 ntBASIC0.62□□□□□ -2.31
HOXD13P35453 MIR1302-3-201ENST00000408128 138 ntBASIC0.62□□□□□ -2.31
HOXD13P35453 MIR1257-201ENST00000408490 117 ntBASIC0.62□□□□□ -2.31
HOXD13P35453 RNU6-447P-201ENST00000410293 104 ntBASIC0.62□□□□□ -2.31
HOXD13P35453 RNU6-1118P-201ENST00000410382 104 ntBASIC0.62□□□□□ -2.31
HOXD13P35453 RNU6-1076P-201ENST00000410397 104 ntBASIC0.62□□□□□ -2.31
HOXD13P35453 RNU6-355P-201ENST00000410427 104 ntBASIC0.62□□□□□ -2.31
HOXD13P35453 RNU6-791P-201ENST00000410467 104 ntBASIC0.62□□□□□ -2.31
HOXD13P35453 RNU6-705P-201ENST00000410601 104 ntBASIC0.62□□□□□ -2.31
HOXD13P35453 RNU4-43P-201ENST00000410628 137 ntBASIC0.62□□□□□ -2.31
HOXD13P35453 RNU6-1100P-201ENST00000410691 104 ntBASIC0.62□□□□□ -2.31
HOXD13P35453 RNU6-860P-201ENST00000410860 104 ntBASIC0.62□□□□□ -2.31
HOXD13P35453 RNU6-177P-201ENST00000411257 104 ntBASIC0.62□□□□□ -2.31
HOXD13P35453 RNU6-1217P-201ENST00000411276 104 ntBASIC0.62□□□□□ -2.31
Retrieved 100 of 98,524 protein–RNA pairs in 281.2 ms