Protein–RNA interactions for Protein: P0CW19

LIMS3, LIM and senescent cell antigen-like-containing domain protein 3, humanhuman

Predictions only

Length 117 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3P0CW19 RNU6-310P-201ENST00000384655 107 ntBASIC-0.73□□□□□ -2.53
LIMS3P0CW19 AC099799.1-201ENST00000439809 192 ntBASIC-0.73□□□□□ -2.53
LIMS3P0CW19 AC109327.2-201ENST00000448339 378 ntBASIC-0.73□□□□□ -2.53
LIMS3P0CW19 RNU7-45P-201ENST00000459460 63 ntBASIC-0.73□□□□□ -2.53
LIMS3P0CW19 AC093831.1-201ENST00000509166 434 ntTSL 3 BASIC-0.73□□□□□ -2.53
LIMS3P0CW19 AC073869.9-201ENST00000641610 120 ntBASIC-0.73□□□□□ -2.53
LIMS3P0CW19 MIR101-1-201ENST00000362265 75 ntBASIC-0.74□□□□□ -2.53
LIMS3P0CW19 SNORD115-24-201ENST00000363528 82 ntBASIC-0.74□□□□□ -2.53
LIMS3P0CW19 RNA5SP245-201ENST00000364239 121 ntBASIC-0.74□□□□□ -2.53
LIMS3P0CW19 SNORD63-201ENST00000384262 68 ntBASIC-0.74□□□□□ -2.53
LIMS3P0CW19 RNU4-30P-201ENST00000410245 143 ntBASIC-0.74□□□□□ -2.53
LIMS3P0CW19 AF228730.3-201ENST00000436691 102 ntBASIC-0.74□□□□□ -2.53
LIMS3P0CW19 RNU6-1265P-201ENST00000516342 103 ntBASIC-0.74□□□□□ -2.53
LIMS3P0CW19 MIR367-201ENST00000362299 68 ntBASIC-0.75□□□□□ -2.53
LIMS3P0CW19 RNY3-201ENST00000365484 102 ntBASIC-0.75□□□□□ -2.53
LIMS3P0CW19 RNU6-890P-201ENST00000384121 107 ntBASIC-0.75□□□□□ -2.53
LIMS3P0CW19 RNA5SP451-201ENST00000410588 110 ntBASIC-0.75□□□□□ -2.53
LIMS3P0CW19 RNU6-284P-201ENST00000411105 106 ntBASIC-0.75□□□□□ -2.53
LIMS3P0CW19 AC096644.2-201ENST00000429278 159 ntBASIC-0.75□□□□□ -2.53
LIMS3P0CW19 RNU6-897P-201ENST00000517135 105 ntBASIC-0.75□□□□□ -2.53
LIMS3P0CW19 AP003733.2-201ENST00000529409 171 ntBASIC-0.75□□□□□ -2.53
LIMS3P0CW19 MIR5690-201ENST00000583739 73 ntBASIC-0.75□□□□□ -2.53
LIMS3P0CW19 AC103591.3-201ENST00000608684 209 ntBASIC-0.75□□□□□ -2.53
LIMS3P0CW19 uc_338.28-201ENST00000612082 187 ntBASIC-0.75□□□□□ -2.53
LIMS3P0CW19 RNA5SP98-201ENST00000363158 137 ntBASIC-0.76□□□□□ -2.53
LIMS3P0CW19 Y_RNA.635-201ENST00000459041 101 ntBASIC-0.76□□□□□ -2.53
LIMS3P0CW19 MIR4802-201ENST00000581881 80 ntBASIC-0.76□□□□□ -2.53
LIMS3P0CW19 AL360085.1-201ENST00000604713 532 ntBASIC-0.76□□□□□ -2.53
LIMS3P0CW19 MIR6779-201ENST00000617283 64 ntBASIC-0.76□□□□□ -2.53
LIMS3P0CW19 MIR3688-2-201ENST00000636963 87 ntBASIC-0.76□□□□□ -2.53
LIMS3P0CW19 MIR4788-201ENST00000639104 80 ntBASIC-0.76□□□□□ -2.53
LIMS3P0CW19 SNORA63.5-201ENST00000363548 123 ntBASIC-0.77□□□□□ -2.53
LIMS3P0CW19 Y_RNA.170-201ENST00000363746 110 ntBASIC-0.77□□□□□ -2.53
LIMS3P0CW19 RNU6-1188P-201ENST00000363795 107 ntBASIC-0.77□□□□□ -2.53
LIMS3P0CW19 Y_RNA.540-201ENST00000384638 111 ntBASIC-0.77□□□□□ -2.53
LIMS3P0CW19 RNU6-763P-201ENST00000390865 106 ntBASIC-0.77□□□□□ -2.53
LIMS3P0CW19 RNU6-370P-201ENST00000411008 104 ntBASIC-0.77□□□□□ -2.53
LIMS3P0CW19 RNU6-191P-201ENST00000516295 94 ntBASIC-0.77□□□□□ -2.53
LIMS3P0CW19 DEFB131E-201ENST00000532329 154 ntBASIC-0.77□□□□□ -2.53
LIMS3P0CW19 AC024909.2-201ENST00000553035 286 ntBASIC-0.77□□□□□ -2.53
LIMS3P0CW19 MIR4724-201ENST00000579485 89 ntBASIC-0.77□□□□□ -2.53
LIMS3P0CW19 NCRUPAR_2.1-201ENST00000616308 99 ntBASIC-0.77□□□□□ -2.53
LIMS3P0CW19 RNU4-58P-201ENST00000363192 141 ntBASIC-0.78□□□□□ -2.53
LIMS3P0CW19 Y_RNA.194-201ENST00000363985 102 ntBASIC-0.78□□□□□ -2.53
LIMS3P0CW19 Y_RNA.351-201ENST00000365436 96 ntBASIC-0.78□□□□□ -2.53
LIMS3P0CW19 MIR876-201ENST00000401147 81 ntBASIC-0.78□□□□□ -2.53
LIMS3P0CW19 RNU6-1203P-201ENST00000410703 110 ntBASIC-0.78□□□□□ -2.53
LIMS3P0CW19 RNU4-14P-201ENST00000410858 122 ntBASIC-0.78□□□□□ -2.53
LIMS3P0CW19 RPS29P8-201ENST00000445109 171 ntBASIC-0.78□□□□□ -2.53
LIMS3P0CW19 AC244505.6-201ENST00000452829 130 ntBASIC-0.78□□□□□ -2.53
LIMS3P0CW19 hsa-mir-3130-1.1-201ENST00000579223 75 ntBASIC-0.78□□□□□ -2.53
LIMS3P0CW19 MIR5589-201ENST00000579442 60 ntBASIC-0.78□□□□□ -2.53
LIMS3P0CW19 MIR4493-201ENST00000584016 73 ntBASIC-0.78□□□□□ -2.53
LIMS3P0CW19 AL121655.1-201ENST00000605811 308 ntBASIC-0.78□□□□□ -2.53
LIMS3P0CW19 U4.5-201ENST00000617137 123 ntBASIC-0.78□□□□□ -2.53
LIMS3P0CW19 G3BP1-214ENST00000627077 114 ntTSL 5 BASIC-0.78□□□□□ -2.53
LIMS3P0CW19 Y_RNA.458-201ENST00000384240 102 ntBASIC-0.79□□□□□ -2.54
LIMS3P0CW19 MTND4P19-201ENST00000446659 478 ntBASIC-0.79□□□□□ -2.54
LIMS3P0CW19 AC010655.3-201ENST00000478818 450 ntBASIC-0.79□□□□□ -2.54
LIMS3P0CW19 MTCO2P24-201ENST00000515611 426 ntBASIC-0.79□□□□□ -2.54
LIMS3P0CW19 Y_RNA.713-201ENST00000517013 96 ntBASIC-0.79□□□□□ -2.54
LIMS3P0CW19 AP005530.1-201ENST00000572608 567 ntTSL 3 BASIC-0.79□□□□□ -2.54
LIMS3P0CW19 AC013791.1-201ENST00000616619 62 ntBASIC-0.79□□□□□ -2.54
LIMS3P0CW19 AC048344.4-201ENST00000619744 527 ntBASIC-0.79□□□□□ -2.54
LIMS3P0CW19 AC084368.1-201ENST00000620935 65 ntBASIC-0.79□□□□□ -2.54
LIMS3P0CW19 RNU6-490P-201ENST00000362985 107 ntBASIC-0.8□□□□□ -2.54
LIMS3P0CW19 SNORA1-201ENST00000384107 130 ntBASIC-0.8□□□□□ -2.54
LIMS3P0CW19 RNU6-937P-201ENST00000384325 106 ntBASIC-0.8□□□□□ -2.54
LIMS3P0CW19 RNU6-1184P-201ENST00000384588 108 ntBASIC-0.8□□□□□ -2.54
LIMS3P0CW19 SNORA20-201ENST00000384662 132 ntBASIC-0.8□□□□□ -2.54
LIMS3P0CW19 AC009480.1-201ENST00000402410 412 ntTSL 3 BASIC-0.8□□□□□ -2.54
LIMS3P0CW19 RNU5E-9P-201ENST00000411164 104 ntBASIC-0.8□□□□□ -2.54
LIMS3P0CW19 AC108059.2-201ENST00000434626 151 ntBASIC-0.8□□□□□ -2.54
LIMS3P0CW19 RNU7-80P-201ENST00000459562 61 ntBASIC-0.8□□□□□ -2.54
LIMS3P0CW19 SEPT14P8-201ENST00000508026 178 ntBASIC-0.8□□□□□ -2.54
LIMS3P0CW19 SNORD113-5-201ENST00000607261 78 ntBASIC-0.8□□□□□ -2.54
LIMS3P0CW19 CYP19A1-220ENST00000613097 123 ntTSL 5 BASIC-0.8□□□□□ -2.54
LIMS3P0CW19 RN7SL660P-201ENST00000614852 299 ntBASIC-0.8□□□□□ -2.54
LIMS3P0CW19 DLEU2_2.2-201ENST00000615474 90 ntBASIC-0.8□□□□□ -2.54
LIMS3P0CW19 MIR101-2-201ENST00000362195 79 ntBASIC-0.81□□□□□ -2.54
LIMS3P0CW19 Y_RNA.125-201ENST00000363371 111 ntBASIC-0.81□□□□□ -2.54
LIMS3P0CW19 RNY1P13-201ENST00000365030 105 ntBASIC-0.81□□□□□ -2.54
LIMS3P0CW19 Y_RNA.439-201ENST00000384119 94 ntBASIC-0.81□□□□□ -2.54
LIMS3P0CW19 Y_RNA.454-201ENST00000384224 113 ntBASIC-0.81□□□□□ -2.54
LIMS3P0CW19 SNORD75.1-201ENST00000408373 60 ntBASIC-0.81□□□□□ -2.54
LIMS3P0CW19 RNU6-397P-201ENST00000516226 104 ntBASIC-0.81□□□□□ -2.54
LIMS3P0CW19 RNU6-531P-201ENST00000516694 104 ntBASIC-0.81□□□□□ -2.54
LIMS3P0CW19 RNU7-30P-201ENST00000516835 62 ntBASIC-0.81□□□□□ -2.54
LIMS3P0CW19 AC107973.1-201ENST00000530249 576 ntTSL 4 BASIC-0.81□□□□□ -2.54
LIMS3P0CW19 AL133368.2-201ENST00000556978 386 ntTSL 3 BASIC-0.81□□□□□ -2.54
LIMS3P0CW19 AC096720.1-201ENST00000604441 183 ntBASIC-0.81□□□□□ -2.54
LIMS3P0CW19 Y_RNA.66-201ENST00000362862 102 ntBASIC-0.82□□□□□ -2.54
LIMS3P0CW19 SNORD41.1-201ENST00000391000 69 ntBASIC-0.82□□□□□ -2.54
LIMS3P0CW19 RNU7-104P-201ENST00000459398 79 ntBASIC-0.82□□□□□ -2.54
LIMS3P0CW19 Y_RNA.655-201ENST00000515919 96 ntBASIC-0.82□□□□□ -2.54
LIMS3P0CW19 RNU7-161P-201ENST00000517289 62 ntBASIC-0.82□□□□□ -2.54
LIMS3P0CW19 AC133104.2-201ENST00000615272 193 ntBASIC-0.82□□□□□ -2.54
LIMS3P0CW19 MIR6841-201ENST00000637129 72 ntBASIC-0.82□□□□□ -2.54
LIMS3P0CW19 RNU6-702P-201ENST00000364982 107 ntBASIC-0.83□□□□□ -2.54
LIMS3P0CW19 RNU6-811P-201ENST00000384069 107 ntBASIC-0.83□□□□□ -2.54
Retrieved 100 of 98,524 protein–RNA pairs in 171 ms