Protein–RNA interactions for Protein: Q9Y5I3

PCDHA1, Protocadherin alpha-1, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA1Q9Y5I3 Y_RNA.370-201ENST00000365589 108 ntBASIC1.69□□□□□ -2.14
PCDHA1Q9Y5I3 RNU6-746P-201ENST00000384112 109 ntBASIC1.69□□□□□ -2.14
PCDHA1Q9Y5I3 RNU6-1067P-201ENST00000384752 107 ntBASIC1.69□□□□□ -2.14
PCDHA1Q9Y5I3 AC023790.1-201ENST00000482174 347 ntBASIC1.69□□□□□ -2.14
PCDHA1Q9Y5I3 RPS26P48-201ENST00000491713 339 ntBASIC1.69□□□□□ -2.14
PCDHA1Q9Y5I3 LINC02514-201ENST00000509058 498 ntTSL 3 BASIC1.69□□□□□ -2.14
PCDHA1Q9Y5I3 SNORD36C-201ENST00000516733 66 ntBASIC1.69□□□□□ -2.14
PCDHA1Q9Y5I3 RNU6-922P-201ENST00000516753 99 ntBASIC1.69□□□□□ -2.14
PCDHA1Q9Y5I3 AC131055.1-201ENST00000584626 316 ntBASIC1.69□□□□□ -2.14
PCDHA1Q9Y5I3 TRAJ36-201ENST00000614481 58 ntAPPRIS P1 BASIC1.69□□□□□ -2.14
PCDHA1Q9Y5I3 Y_RNA.215-201ENST00000364204 112 ntBASIC1.68□□□□□ -2.14
PCDHA1Q9Y5I3 Y_RNA.251-201ENST00000364551 99 ntBASIC1.68□□□□□ -2.14
PCDHA1Q9Y5I3 RNU6-1336P-201ENST00000383886 109 ntBASIC1.68□□□□□ -2.14
PCDHA1Q9Y5I3 Y_RNA.440-201ENST00000384120 114 ntBASIC1.68□□□□□ -2.14
PCDHA1Q9Y5I3 AC009474.2-201ENST00000451383 136 ntBASIC1.68□□□□□ -2.14
PCDHA1Q9Y5I3 AC107297.1-201ENST00000459991 176 ntBASIC1.68□□□□□ -2.14
PCDHA1Q9Y5I3 RNA5SP445-201ENST00000515889 115 ntBASIC1.68□□□□□ -2.14
PCDHA1Q9Y5I3 MIR548X2-201ENST00000579776 100 ntBASIC1.68□□□□□ -2.14
PCDHA1Q9Y5I3 MIR376A2-201ENST00000636782 80 ntBASIC1.68□□□□□ -2.14
PCDHA1Q9Y5I3 ZNF209P-201ENST00000593450 2304 ntBASIC1.67□□□□□ -2.14
PCDHA1Q9Y5I3 Y_RNA.4-201ENST00000362333 112 ntBASIC1.67□□□□□ -2.14
PCDHA1Q9Y5I3 Y_RNA.164-201ENST00000363709 102 ntBASIC1.67□□□□□ -2.14
PCDHA1Q9Y5I3 Y_RNA.241-201ENST00000364470 117 ntBASIC1.67□□□□□ -2.14
PCDHA1Q9Y5I3 Y_RNA.497-201ENST00000384447 98 ntBASIC1.67□□□□□ -2.14
PCDHA1Q9Y5I3 SNORD28B-201ENST00000390993 75 ntBASIC1.67□□□□□ -2.14
PCDHA1Q9Y5I3 RNU7-197P-201ENST00000458836 62 ntBASIC1.67□□□□□ -2.14
PCDHA1Q9Y5I3 RPL30P7-201ENST00000479312 323 ntBASIC1.67□□□□□ -2.14
PCDHA1Q9Y5I3 RNU1-92P-201ENST00000517017 135 ntBASIC1.67□□□□□ -2.14
PCDHA1Q9Y5I3 IGHVIII-67-2-201ENST00000519849 88 ntBASIC1.67□□□□□ -2.14
PCDHA1Q9Y5I3 MIR3937-201ENST00000580135 106 ntBASIC1.67□□□□□ -2.14
PCDHA1Q9Y5I3 MIR4764-201ENST00000580680 88 ntBASIC1.67□□□□□ -2.14
PCDHA1Q9Y5I3 LINC00643-201ENST00000334389 3247 ntTSL 2 BASIC1.66□□□□□ -2.14
PCDHA1Q9Y5I3 SNORA27-201ENST00000384323 126 ntBASIC1.66□□□□□ -2.14
PCDHA1Q9Y5I3 Y_RNA.494-201ENST00000384432 111 ntBASIC1.66□□□□□ -2.14
PCDHA1Q9Y5I3 RNU6-125P-201ENST00000384505 107 ntBASIC1.66□□□□□ -2.14
PCDHA1Q9Y5I3 Y_RNA.537-201ENST00000384626 109 ntBASIC1.66□□□□□ -2.14
PCDHA1Q9Y5I3 MIR520C-201ENST00000385005 87 ntBASIC1.66□□□□□ -2.14
PCDHA1Q9Y5I3 MIR513C-201ENST00000401352 84 ntBASIC1.66□□□□□ -2.14
PCDHA1Q9Y5I3 Y_RNA.676-201ENST00000516393 96 ntBASIC1.66□□□□□ -2.14
PCDHA1Q9Y5I3 RNU6-902P-201ENST00000517212 91 ntBASIC1.66□□□□□ -2.14
PCDHA1Q9Y5I3 AC019176.1-201ENST00000518519 225 ntBASIC1.66□□□□□ -2.14
PCDHA1Q9Y5I3 AC090155.2-201ENST00000518854 267 ntTSL 3 BASIC1.66□□□□□ -2.14
PCDHA1Q9Y5I3 MIR3664-201ENST00000579074 99 ntBASIC1.66□□□□□ -2.14
PCDHA1Q9Y5I3 AL359821.1-201ENST00000605519 182 ntBASIC1.66□□□□□ -2.14
PCDHA1Q9Y5I3 ZNF732-201ENST00000419098 2193 ntAPPRIS P2 TSL 2 BASIC1.66□□□□□ -2.14
PCDHA1Q9Y5I3 AP003174.1-201ENST00000306533 376 ntTSL 2 BASIC1.65□□□□□ -2.15
PCDHA1Q9Y5I3 SNORA24-201ENST00000384096 131 ntBASIC1.65□□□□□ -2.15
PCDHA1Q9Y5I3 RNU6ATAC3P-201ENST00000387974 126 ntBASIC1.65□□□□□ -2.15
PCDHA1Q9Y5I3 Y_RNA.703-201ENST00000516846 111 ntBASIC1.65□□□□□ -2.15
PCDHA1Q9Y5I3 SCARNA15-202ENST00000516881 127 ntBASIC1.65□□□□□ -2.15
PCDHA1Q9Y5I3 AP000648.3-201ENST00000623539 4507 ntBASIC1.65□□□□□ -2.15
PCDHA1Q9Y5I3 Y_RNA.52-201ENST00000362760 96 ntBASIC1.64□□□□□ -2.15
PCDHA1Q9Y5I3 U8.1-201ENST00000362843 134 ntBASIC1.64□□□□□ -2.15
PCDHA1Q9Y5I3 SNORA7.1-201ENST00000363750 139 ntBASIC1.64□□□□□ -2.15
PCDHA1Q9Y5I3 Y_RNA.488-201ENST00000384403 102 ntBASIC1.64□□□□□ -2.15
PCDHA1Q9Y5I3 MIR569-201ENST00000385228 96 ntBASIC1.64□□□□□ -2.15
PCDHA1Q9Y5I3 MIR320A-201ENST00000385302 82 ntBASIC1.64□□□□□ -2.15
PCDHA1Q9Y5I3 Y_RNA.584-201ENST00000391090 114 ntBASIC1.64□□□□□ -2.15
PCDHA1Q9Y5I3 ZNF468-202ENST00000396409 384 ntTSL 5 BASIC1.64□□□□□ -2.15
PCDHA1Q9Y5I3 MIR548M-201ENST00000408260 86 ntBASIC1.64□□□□□ -2.15
PCDHA1Q9Y5I3 RNU6-321P-201ENST00000410912 106 ntBASIC1.64□□□□□ -2.15
PCDHA1Q9Y5I3 RPS27P16-201ENST00000425758 201 ntBASIC1.64□□□□□ -2.15
PCDHA1Q9Y5I3 AC090821.2-201ENST00000523552 176 ntBASIC1.64□□□□□ -2.15
PCDHA1Q9Y5I3 AL512310.8-201ENST00000550183 120 ntBASIC1.64□□□□□ -2.15
PCDHA1Q9Y5I3 MIR4791-201ENST00000607666 84 ntBASIC1.64□□□□□ -2.15
PCDHA1Q9Y5I3 KIAA1551-201ENST00000312561 6230 ntAPPRIS P1 TSL 1 (best) BASIC1.63□□□□□ -2.15
PCDHA1Q9Y5I3 KTN1-205ENST00000395314 4618 ntAPPRIS P4 TSL 1 (best) BASIC1.63□□□□□ -2.15
PCDHA1Q9Y5I3 RNY1P11-201ENST00000363759 113 ntBASIC1.63□□□□□ -2.15
PCDHA1Q9Y5I3 SNORA70.7-201ENST00000384159 133 ntBASIC1.63□□□□□ -2.15
PCDHA1Q9Y5I3 RNU7-96P-201ENST00000459535 64 ntBASIC1.63□□□□□ -2.15
PCDHA1Q9Y5I3 RNU7-80P-201ENST00000459562 61 ntBASIC1.63□□□□□ -2.15
PCDHA1Q9Y5I3 RPS29P24-201ENST00000486345 171 ntBASIC1.63□□□□□ -2.15
PCDHA1Q9Y5I3 TRMT112P2-201ENST00000512910 132 ntBASIC1.63□□□□□ -2.15
PCDHA1Q9Y5I3 SNORD111.1-201ENST00000516421 86 ntBASIC1.63□□□□□ -2.15
PCDHA1Q9Y5I3 MIR4421-201ENST00000578133 69 ntBASIC1.63□□□□□ -2.15
PCDHA1Q9Y5I3 MIR4781-201ENST00000585250 76 ntBASIC1.63□□□□□ -2.15
PCDHA1Q9Y5I3 AC008133.2-201ENST00000624540 351 ntBASIC1.63□□□□□ -2.15
PCDHA1Q9Y5I3 KIAA1107-201ENST00000370378 4622 ntTSL 5 BASIC1.63□□□□□ -2.15
PCDHA1Q9Y5I3 MTND5P32-201ENST00000560711 1802 ntBASIC1.62□□□□□ -2.15
PCDHA1Q9Y5I3 Y_RNA.120-201ENST00000363304 110 ntBASIC1.62□□□□□ -2.15
PCDHA1Q9Y5I3 RPS29P29-201ENST00000456396 171 ntBASIC1.62□□□□□ -2.15
PCDHA1Q9Y5I3 RNU6-998P-201ENST00000515894 101 ntBASIC1.62□□□□□ -2.15
PCDHA1Q9Y5I3 RNU6-346P-201ENST00000516288 111 ntBASIC1.62□□□□□ -2.15
PCDHA1Q9Y5I3 RNU6-1149P-201ENST00000516810 97 ntBASIC1.62□□□□□ -2.15
PCDHA1Q9Y5I3 MIR4285-201ENST00000581001 85 ntBASIC1.62□□□□□ -2.15
PCDHA1Q9Y5I3 MIR3133-201ENST00000583157 78 ntBASIC1.62□□□□□ -2.15
PCDHA1Q9Y5I3 AC243994.1-201ENST00000618627 109 ntBASIC1.62□□□□□ -2.15
PCDHA1Q9Y5I3 SENP7-201ENST00000314261 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC1.62□□□□□ -2.15
PCDHA1Q9Y5I3 Y_RNA.343-201ENST00000365354 112 ntBASIC1.61□□□□□ -2.15
PCDHA1Q9Y5I3 Y_RNA.351-201ENST00000365436 96 ntBASIC1.61□□□□□ -2.15
PCDHA1Q9Y5I3 SNORD50.2-201ENST00000365465 70 ntBASIC1.61□□□□□ -2.15
PCDHA1Q9Y5I3 Y_RNA.454-201ENST00000384224 113 ntBASIC1.61□□□□□ -2.15
PCDHA1Q9Y5I3 TRAJ47-201ENST00000390490 57 ntAPPRIS P1 BASIC1.61□□□□□ -2.15
PCDHA1Q9Y5I3 AL603908.1-201ENST00000406098 201 ntBASIC1.61□□□□□ -2.15
PCDHA1Q9Y5I3 SUMO1P3-201ENST00000439961 304 ntBASIC1.61□□□□□ -2.15
PCDHA1Q9Y5I3 RPL39P39-201ENST00000455840 151 ntBASIC1.61□□□□□ -2.15
PCDHA1Q9Y5I3 NMTRQ-TTG12-1-201ENST00000467595 72 ntBASIC1.61□□□□□ -2.15
PCDHA1Q9Y5I3 RNA5SP236-201ENST00000516169 116 ntBASIC1.61□□□□□ -2.15
PCDHA1Q9Y5I3 AL096861.1-201ENST00000610899 123 ntBASIC1.61□□□□□ -2.15
PCDHA1Q9Y5I3 AL121890.5-201ENST00000620848 304 ntBASIC1.61□□□□□ -2.15
Retrieved 100 of 98,524 protein–RNA pairs in 107.4 ms