Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 RNU6ATAC20P-201ENST00000408436 127 ntBASIC0.5□□□□□ -2.33
FOXA2Q9Y261 RNU6ATAC31P-201ENST00000408513 126 ntBASIC0.5□□□□□ -2.33
FOXA2Q9Y261 RNU6-1203P-201ENST00000410703 110 ntBASIC0.5□□□□□ -2.33
FOXA2Q9Y261 AC244023.1-201ENST00000426884 112 ntBASIC0.5□□□□□ -2.33
FOXA2Q9Y261 RPS29P24-201ENST00000486345 171 ntBASIC0.5□□□□□ -2.33
FOXA2Q9Y261 AC242498.1-201ENST00000604134 111 ntBASIC0.5□□□□□ -2.33
FOXA2Q9Y261 MT-CO2-201ENST00000361739 684 ntAPPRIS P1 BASIC0.49□□□□□ -2.33
FOXA2Q9Y261 Y_RNA.229-201ENST00000364347 113 ntBASIC0.49□□□□□ -2.33
FOXA2Q9Y261 SNORD61-201ENST00000384252 73 ntBASIC0.49□□□□□ -2.33
FOXA2Q9Y261 MIR92A1-201ENST00000385233 78 ntBASIC0.49□□□□□ -2.33
FOXA2Q9Y261 MIR140-201ENST00000385282 100 ntBASIC0.49□□□□□ -2.33
FOXA2Q9Y261 RNU6-913P-201ENST00000390913 95 ntBASIC0.49□□□□□ -2.33
FOXA2Q9Y261 AC012668.1-201ENST00000457625 228 ntTSL 3 BASIC0.49□□□□□ -2.33
FOXA2Q9Y261 RNA5SP220-201ENST00000516298 104 ntBASIC0.49□□□□□ -2.33
FOXA2Q9Y261 AC004812.1-201ENST00000540773 146 ntBASIC0.49□□□□□ -2.33
FOXA2Q9Y261 AC015818.4-201ENST00000580931 353 ntTSL 5 BASIC0.49□□□□□ -2.33
FOXA2Q9Y261 MIR4676-201ENST00000583078 72 ntBASIC0.49□□□□□ -2.33
FOXA2Q9Y261 RNU6-888P-201ENST00000363010 101 ntBASIC0.48□□□□□ -2.33
FOXA2Q9Y261 SNORA1.1-201ENST00000364671 133 ntBASIC0.48□□□□□ -2.33
FOXA2Q9Y261 Y_RNA.275-201ENST00000364726 110 ntBASIC0.48□□□□□ -2.33
FOXA2Q9Y261 RNU6-639P-201ENST00000384074 107 ntBASIC0.48□□□□□ -2.33
FOXA2Q9Y261 RNU6-1289P-201ENST00000384431 106 ntBASIC0.48□□□□□ -2.33
FOXA2Q9Y261 Y_RNA.572-201ENST00000384757 98 ntBASIC0.48□□□□□ -2.33
FOXA2Q9Y261 RNU2-70P-201ENST00000410718 179 ntBASIC0.48□□□□□ -2.33
FOXA2Q9Y261 RNU6-177P-201ENST00000411257 104 ntBASIC0.48□□□□□ -2.33
FOXA2Q9Y261 RNU6-938P-201ENST00000411285 103 ntBASIC0.48□□□□□ -2.33
FOXA2Q9Y261 RNU6-1299P-201ENST00000516316 100 ntBASIC0.48□□□□□ -2.33
FOXA2Q9Y261 SNORD36C-201ENST00000516733 66 ntBASIC0.48□□□□□ -2.33
FOXA2Q9Y261 RNU6-570P-201ENST00000517051 105 ntBASIC0.48□□□□□ -2.33
FOXA2Q9Y261 RNU6-1223P-201ENST00000517124 104 ntBASIC0.48□□□□□ -2.33
FOXA2Q9Y261 AC007991.2-201ENST00000520185 102 ntTSL 5 BASIC0.48□□□□□ -2.33
FOXA2Q9Y261 MIR5000-201ENST00000577717 103 ntBASIC0.48□□□□□ -2.33
FOXA2Q9Y261 MIR4714-201ENST00000580728 77 ntBASIC0.48□□□□□ -2.33
FOXA2Q9Y261 MIR4804-201ENST00000581683 73 ntBASIC0.48□□□□□ -2.33
FOXA2Q9Y261 AC044792.1-201ENST00000593294 196 ntBASIC0.48□□□□□ -2.33
FOXA2Q9Y261 uc_338.17-201ENST00000619633 179 ntBASIC0.48□□□□□ -2.33
FOXA2Q9Y261 KCNQ1OT1_5.1-201ENST00000621902 226 ntBASIC0.48□□□□□ -2.33
FOXA2Q9Y261 EVI2B-201ENST00000330927 1999 ntAPPRIS P1 TSL 1 (best) BASIC0.48□□□□□ -2.33
FOXA2Q9Y261 AC010332.2-201ENST00000613083 1904 ntBASIC0.47□□□□□ -2.33
FOXA2Q9Y261 RNY1P8-201ENST00000383970 114 ntBASIC0.47□□□□□ -2.33
FOXA2Q9Y261 RNU6-1227P-201ENST00000383981 107 ntBASIC0.47□□□□□ -2.33
FOXA2Q9Y261 MIR548A2-201ENST00000384956 97 ntBASIC0.47□□□□□ -2.33
FOXA2Q9Y261 AC137770.1-201ENST00000504620 530 ntTSL 3 BASIC0.47□□□□□ -2.33
FOXA2Q9Y261 AC068658.1-201ENST00000507509 388 ntTSL 2 BASIC0.47□□□□□ -2.33
FOXA2Q9Y261 Z97988.1-201ENST00000637697 135 ntBASIC0.47□□□□□ -2.33
FOXA2Q9Y261 Y_RNA.117-201ENST00000363294 101 ntBASIC0.46□□□□□ -2.34
FOXA2Q9Y261 RNU4-45P-201ENST00000365469 141 ntBASIC0.46□□□□□ -2.34
FOXA2Q9Y261 MIR626-201ENST00000385032 94 ntBASIC0.46□□□□□ -2.34
FOXA2Q9Y261 RNU6-1109P-201ENST00000391187 107 ntBASIC0.46□□□□□ -2.34
FOXA2Q9Y261 MIR938-201ENST00000401216 83 ntBASIC0.46□□□□□ -2.34
FOXA2Q9Y261 HMGN1P33-201ENST00000432945 451 ntBASIC0.46□□□□□ -2.34
FOXA2Q9Y261 AL138752.1-201ENST00000452964 351 ntBASIC0.46□□□□□ -2.34
FOXA2Q9Y261 RNU7-96P-201ENST00000459535 64 ntBASIC0.46□□□□□ -2.34
FOXA2Q9Y261 RNU6-1153P-201ENST00000516760 105 ntBASIC0.46□□□□□ -2.34
FOXA2Q9Y261 MIR3612-201ENST00000579753 87 ntBASIC0.46□□□□□ -2.34
FOXA2Q9Y261 AL162730.1-201ENST00000605734 292 ntBASIC0.46□□□□□ -2.34
FOXA2Q9Y261 AC020891.4-201ENST00000605745 93 ntBASIC0.46□□□□□ -2.34
FOXA2Q9Y261 MIR8055-201ENST00000610739 97 ntBASIC0.46□□□□□ -2.34
FOXA2Q9Y261 ZBTB41-201ENST00000367405 8478 ntAPPRIS P1 TSL 1 (best) BASIC0.46□□□□□ -2.34
FOXA2Q9Y261 Y_RNA.7-201ENST00000362352 102 ntBASIC0.45□□□□□ -2.34
FOXA2Q9Y261 Y_RNA.44-201ENST00000362676 108 ntBASIC0.45□□□□□ -2.34
FOXA2Q9Y261 Y_RNA.116-201ENST00000363292 103 ntBASIC0.45□□□□□ -2.34
FOXA2Q9Y261 RNU6-1309P-201ENST00000363305 108 ntBASIC0.45□□□□□ -2.34
FOXA2Q9Y261 MIR588-201ENST00000384900 83 ntBASIC0.45□□□□□ -2.34
FOXA2Q9Y261 SNORD77.3-201ENST00000391113 65 ntBASIC0.45□□□□□ -2.34
FOXA2Q9Y261 MIR18B-201ENST00000454574 71 ntBASIC0.45□□□□□ -2.34
FOXA2Q9Y261 RNU2-11P-201ENST00000459191 187 ntBASIC0.45□□□□□ -2.34
FOXA2Q9Y261 TRBVB-201ENST00000477100 408 ntBASIC0.45□□□□□ -2.34
FOXA2Q9Y261 AP001282.2-201ENST00000616149 309 ntBASIC0.45□□□□□ -2.34
FOXA2Q9Y261 MIR6740-201ENST00000618268 113 ntBASIC0.45□□□□□ -2.34
FOXA2Q9Y261 MIR6734-201ENST00000621166 68 ntBASIC0.45□□□□□ -2.34
FOXA2Q9Y261 MIR18A-201ENST00000362310 71 ntBASIC0.44□□□□□ -2.34
FOXA2Q9Y261 Y_RNA.11-201ENST00000362375 109 ntBASIC0.44□□□□□ -2.34
FOXA2Q9Y261 Y_RNA.237-201ENST00000364439 102 ntBASIC0.44□□□□□ -2.34
FOXA2Q9Y261 RNU6-740P-201ENST00000364734 105 ntBASIC0.44□□□□□ -2.34
FOXA2Q9Y261 Y_RNA.410-201ENST00000383992 113 ntBASIC0.44□□□□□ -2.34
FOXA2Q9Y261 Y_RNA.432-201ENST00000384087 111 ntBASIC0.44□□□□□ -2.34
FOXA2Q9Y261 RNU6-42P-201ENST00000384165 107 ntBASIC0.44□□□□□ -2.34
FOXA2Q9Y261 RNU6-364P-201ENST00000384387 107 ntBASIC0.44□□□□□ -2.34
FOXA2Q9Y261 RNU6-713P-201ENST00000384761 107 ntBASIC0.44□□□□□ -2.34
FOXA2Q9Y261 MIR548I3-201ENST00000408378 149 ntBASIC0.44□□□□□ -2.34
FOXA2Q9Y261 RNU6-1165P-201ENST00000410119 107 ntBASIC0.44□□□□□ -2.34
FOXA2Q9Y261 RNU2-55P-201ENST00000411146 174 ntBASIC0.44□□□□□ -2.34
FOXA2Q9Y261 AF228730.3-201ENST00000436691 102 ntBASIC0.44□□□□□ -2.34
FOXA2Q9Y261 AL353742.1-201ENST00000453455 224 ntTSL 3 BASIC0.44□□□□□ -2.34
FOXA2Q9Y261 RN7SKP12-201ENST00000516275 143 ntBASIC0.44□□□□□ -2.34
FOXA2Q9Y261 ZNF654-201ENST00000309495 4957 ntAPPRIS P2 TSL 1 (best) BASIC0.43□□□□□ -2.34
FOXA2Q9Y261 MIR342-201ENST00000362212 99 ntBASIC0.43□□□□□ -2.34
FOXA2Q9Y261 RNA5SP347-201ENST00000362445 119 ntBASIC0.43□□□□□ -2.34
FOXA2Q9Y261 Y_RNA.66-201ENST00000362862 102 ntBASIC0.43□□□□□ -2.34
FOXA2Q9Y261 RNU6-1189P-201ENST00000383958 107 ntBASIC0.43□□□□□ -2.34
FOXA2Q9Y261 RNY3P5-201ENST00000384127 102 ntBASIC0.43□□□□□ -2.34
FOXA2Q9Y261 MIR518E-201ENST00000385252 88 ntBASIC0.43□□□□□ -2.34
FOXA2Q9Y261 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC0.43□□□□□ -2.34
FOXA2Q9Y261 MIR1257-201ENST00000408490 117 ntBASIC0.43□□□□□ -2.34
FOXA2Q9Y261 RNU6-651P-201ENST00000411040 105 ntBASIC0.43□□□□□ -2.34
FOXA2Q9Y261 Y_RNA.622-201ENST00000411091 108 ntBASIC0.43□□□□□ -2.34
FOXA2Q9Y261 RNU6-602P-201ENST00000411155 105 ntBASIC0.43□□□□□ -2.34
FOXA2Q9Y261 RNU7-56P-201ENST00000458744 62 ntBASIC0.43□□□□□ -2.34
FOXA2Q9Y261 SNORD2.1-201ENST00000458762 69 ntBASIC0.43□□□□□ -2.34
Retrieved 100 of 98,524 protein–RNA pairs in 107.8 ms