Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 SNORA4-201ENST00000584302 138 ntBASIC0.78□□□□□ -2.28
VPS28Q9UK41 AC006504.6-201ENST00000590142 199 ntBASIC0.78□□□□□ -2.28
VPS28Q9UK41 Y_RNA.771-201ENST00000598668 102 ntBASIC0.78□□□□□ -2.28
VPS28Q9UK41 MIR6734-201ENST00000621166 68 ntBASIC0.78□□□□□ -2.28
VPS28Q9UK41 Y_RNA.789-201ENST00000622480 102 ntBASIC0.78□□□□□ -2.28
VPS28Q9UK41 MIR335-201ENST00000362173 94 ntBASIC0.77□□□□□ -2.29
VPS28Q9UK41 RNU2-70P-201ENST00000410718 179 ntBASIC0.77□□□□□ -2.29
VPS28Q9UK41 RNU6-938P-201ENST00000411285 103 ntBASIC0.77□□□□□ -2.29
VPS28Q9UK41 RPS29P24-201ENST00000486345 171 ntBASIC0.77□□□□□ -2.29
VPS28Q9UK41 COX6CP6-201ENST00000490840 228 ntBASIC0.77□□□□□ -2.29
VPS28Q9UK41 AP003072.1-201ENST00000531740 145 ntBASIC0.77□□□□□ -2.29
VPS28Q9UK41 TEX15-201ENST00000256246 10110 ntTSL 1 (best) BASIC0.76□□□□□ -2.29
VPS28Q9UK41 Y_RNA.432-201ENST00000384087 111 ntBASIC0.76□□□□□ -2.29
VPS28Q9UK41 RNU6-42P-201ENST00000384165 107 ntBASIC0.76□□□□□ -2.29
VPS28Q9UK41 TRAJ22-201ENST00000390515 63 ntAPPRIS P1 BASIC0.76□□□□□ -2.29
VPS28Q9UK41 RNU6ATAC20P-201ENST00000408436 127 ntBASIC0.76□□□□□ -2.29
VPS28Q9UK41 Y_RNA.590-201ENST00000410140 107 ntBASIC0.76□□□□□ -2.29
VPS28Q9UK41 RNU6-1223P-201ENST00000517124 104 ntBASIC0.76□□□□□ -2.29
VPS28Q9UK41 Y_RNA.720-201ENST00000517166 92 ntBASIC0.76□□□□□ -2.29
VPS28Q9UK41 AC010177.1-201ENST00000547819 366 ntTSL 3 BASIC0.76□□□□□ -2.29
VPS28Q9UK41 MIR6835-201ENST00000621552 64 ntBASIC0.76□□□□□ -2.29
VPS28Q9UK41 Y_RNA.66-201ENST00000362862 102 ntBASIC0.75□□□□□ -2.29
VPS28Q9UK41 SNORA63C-201ENST00000364578 129 ntBASIC0.75□□□□□ -2.29
VPS28Q9UK41 RNU1-119P-201ENST00000391122 165 ntBASIC0.75□□□□□ -2.29
VPS28Q9UK41 MIR1302-6-201ENST00000408466 90 ntBASIC0.75□□□□□ -2.29
VPS28Q9UK41 AC090844.1-201ENST00000422019 156 ntBASIC0.75□□□□□ -2.29
VPS28Q9UK41 AL353742.1-201ENST00000453455 224 ntTSL 3 BASIC0.75□□□□□ -2.29
VPS28Q9UK41 Y_RNA.679-201ENST00000516416 91 ntBASIC0.75□□□□□ -2.29
VPS28Q9UK41 RNA5SP153-201ENST00000516498 76 ntBASIC0.75□□□□□ -2.29
VPS28Q9UK41 SNORD36C-201ENST00000516733 66 ntBASIC0.75□□□□□ -2.29
VPS28Q9UK41 AC011195.1-201ENST00000578177 177 ntBASIC0.75□□□□□ -2.29
VPS28Q9UK41 ANGPTL3-201ENST00000371129 2805 ntAPPRIS P1 TSL 1 (best) BASIC0.75□□□□□ -2.29
VPS28Q9UK41 CCDC73-201ENST00000335185 3849 ntAPPRIS P2 TSL 2 BASIC0.75□□□□□ -2.29
VPS28Q9UK41 Y_RNA.634-201ENST00000364811 113 ntBASIC0.74□□□□□ -2.29
VPS28Q9UK41 RNU6-934P-201ENST00000365154 107 ntBASIC0.74□□□□□ -2.29
VPS28Q9UK41 RNU6-484P-201ENST00000384016 107 ntBASIC0.74□□□□□ -2.29
VPS28Q9UK41 Y_RNA.512-201ENST00000384518 102 ntBASIC0.74□□□□□ -2.29
VPS28Q9UK41 SNORD38B-201ENST00000384690 67 ntBASIC0.74□□□□□ -2.29
VPS28Q9UK41 AC244098.3-201ENST00000424803 96 ntBASIC0.74□□□□□ -2.29
VPS28Q9UK41 RNU7-62P-201ENST00000458856 62 ntBASIC0.74□□□□□ -2.29
VPS28Q9UK41 AC133485.1-201ENST00000567176 124 ntBASIC0.74□□□□□ -2.29
VPS28Q9UK41 AC138907.6-201ENST00000568401 126 ntBASIC0.74□□□□□ -2.29
VPS28Q9UK41 RMST_2.1-201ENST00000617263 136 ntBASIC0.74□□□□□ -2.29
VPS28Q9UK41 MIR8062-201ENST00000621515 85 ntBASIC0.74□□□□□ -2.29
VPS28Q9UK41 SNORD38B-202ENST00000625943 69 ntBASIC0.74□□□□□ -2.29
VPS28Q9UK41 Z97988.1-201ENST00000637697 135 ntBASIC0.74□□□□□ -2.29
VPS28Q9UK41 Y_RNA.91-201ENST00000363042 107 ntBASIC0.73□□□□□ -2.29
VPS28Q9UK41 RNU6-238P-201ENST00000363313 106 ntBASIC0.73□□□□□ -2.29
VPS28Q9UK41 Y_RNA.355-201ENST00000365462 98 ntBASIC0.73□□□□□ -2.29
VPS28Q9UK41 Y_RNA.410-201ENST00000383992 113 ntBASIC0.73□□□□□ -2.29
VPS28Q9UK41 Y_RNA.461-201ENST00000384263 103 ntBASIC0.73□□□□□ -2.29
VPS28Q9UK41 Y_RNA.508-201ENST00000384502 114 ntBASIC0.73□□□□□ -2.29
VPS28Q9UK41 MIR508-201ENST00000384857 115 ntBASIC0.73□□□□□ -2.29
VPS28Q9UK41 MIR616-201ENST00000385293 97 ntBASIC0.73□□□□□ -2.29
VPS28Q9UK41 RNU6-913P-201ENST00000390913 95 ntBASIC0.73□□□□□ -2.29
VPS28Q9UK41 AL583859.1-201ENST00000455871 335 ntTSL 3 BASIC0.73□□□□□ -2.29
VPS28Q9UK41 snoU13.21-201ENST00000459368 105 ntBASIC0.73□□□□□ -2.29
VPS28Q9UK41 RNU7-96P-201ENST00000459535 64 ntBASIC0.73□□□□□ -2.29
VPS28Q9UK41 MTATP8P1-201ENST00000467115 207 ntBASIC0.73□□□□□ -2.29
VPS28Q9UK41 RNU6-369P-201ENST00000362515 102 ntBASIC0.72□□□□□ -2.29
VPS28Q9UK41 RNU6-1160P-201ENST00000384546 104 ntBASIC0.72□□□□□ -2.29
VPS28Q9UK41 RNU6-1228P-201ENST00000391014 107 ntBASIC0.72□□□□□ -2.29
VPS28Q9UK41 AL606845.1-201ENST00000404881 255 ntBASIC0.72□□□□□ -2.29
VPS28Q9UK41 RNU6ATAC31P-201ENST00000408513 126 ntBASIC0.72□□□□□ -2.29
VPS28Q9UK41 Y_RNA.622-201ENST00000411091 108 ntBASIC0.72□□□□□ -2.29
VPS28Q9UK41 SNORD83.1-201ENST00000411362 77 ntBASIC0.72□□□□□ -2.29
VPS28Q9UK41 AC244023.1-201ENST00000426884 112 ntBASIC0.72□□□□□ -2.29
VPS28Q9UK41 AF228730.3-201ENST00000436691 102 ntBASIC0.72□□□□□ -2.29
VPS28Q9UK41 RNU6-977P-201ENST00000516411 103 ntBASIC0.72□□□□□ -2.29
VPS28Q9UK41 MIR4771-2-201ENST00000577758 74 ntBASIC0.72□□□□□ -2.29
VPS28Q9UK41 MIR4771-1-201ENST00000582617 74 ntBASIC0.72□□□□□ -2.29
VPS28Q9UK41 AC097639.2-201ENST00000603159 172 ntBASIC0.72□□□□□ -2.29
VPS28Q9UK41 AC242498.1-201ENST00000604134 111 ntBASIC0.72□□□□□ -2.29
VPS28Q9UK41 AL590095.2-201ENST00000604136 117 ntBASIC0.72□□□□□ -2.29
VPS28Q9UK41 MIR8055-201ENST00000610739 97 ntBASIC0.72□□□□□ -2.29
VPS28Q9UK41 SNORA1.1-201ENST00000364671 133 ntBASIC0.71□□□□□ -2.3
VPS28Q9UK41 Y_RNA.304-201ENST00000365011 112 ntBASIC0.71□□□□□ -2.3
VPS28Q9UK41 RNU6-1189P-201ENST00000383958 107 ntBASIC0.71□□□□□ -2.3
VPS28Q9UK41 Y_RNA.483-201ENST00000384380 101 ntBASIC0.71□□□□□ -2.3
VPS28Q9UK41 MT-TT-201ENST00000387460 66 ntBASIC0.71□□□□□ -2.3
VPS28Q9UK41 RNU6-651P-201ENST00000411040 105 ntBASIC0.71□□□□□ -2.3
VPS28Q9UK41 AC137770.1-201ENST00000504620 530 ntTSL 3 BASIC0.71□□□□□ -2.3
VPS28Q9UK41 MIR5000-201ENST00000577717 103 ntBASIC0.71□□□□□ -2.3
VPS28Q9UK41 MIR4714-201ENST00000580728 77 ntBASIC0.71□□□□□ -2.3
VPS28Q9UK41 MIR4282-201ENST00000583613 67 ntBASIC0.71□□□□□ -2.3
VPS28Q9UK41 CXADR-202ENST00000356275 270 ntTSL 1 (best) BASIC0.7□□□□□ -2.3
VPS28Q9UK41 MT-ATP8-201ENST00000361851 207 ntAPPRIS P1 BASIC0.7□□□□□ -2.3
VPS28Q9UK41 SNORA63-201ENST00000363450 132 ntBASIC0.7□□□□□ -2.3
VPS28Q9UK41 Y_RNA.199-201ENST00000364014 102 ntBASIC0.7□□□□□ -2.3
VPS28Q9UK41 snoU2_19.4-201ENST00000364329 80 ntBASIC0.7□□□□□ -2.3
VPS28Q9UK41 Y_RNA.326-201ENST00000365176 113 ntBASIC0.7□□□□□ -2.3
VPS28Q9UK41 Y_RNA.574-201ENST00000384766 95 ntBASIC0.7□□□□□ -2.3
VPS28Q9UK41 MIR520F-201ENST00000384824 87 ntBASIC0.7□□□□□ -2.3
VPS28Q9UK41 RNU6ATAC6P-201ENST00000408132 126 ntBASIC0.7□□□□□ -2.3
VPS28Q9UK41 RNU6-998P-201ENST00000515894 101 ntBASIC0.7□□□□□ -2.3
VPS28Q9UK41 AL442663.2-201ENST00000554385 511 ntBASIC0.7□□□□□ -2.3
VPS28Q9UK41 TTC28-AS1_2.1-201ENST00000611117 157 ntBASIC0.7□□□□□ -2.3
VPS28Q9UK41 Y_RNA.518-201ENST00000384552 113 ntBASIC0.69□□□□□ -2.3
VPS28Q9UK41 MT-TW-201ENST00000387382 68 ntBASIC0.69□□□□□ -2.3
VPS28Q9UK41 SNORD77.3-201ENST00000391113 65 ntBASIC0.69□□□□□ -2.3
Retrieved 100 of 98,524 protein–RNA pairs in 183.4 ms