Protein–RNA interactions for Protein: Q9NY35

CLDND1, Claudin domain-containing protein 1, humanhuman

Predictions only

Length 253 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDND1Q9NY35 RNU7-96P-201ENST00000459535 64 ntBASIC2.16□□□□□ -2.06
CLDND1Q9NY35 RPS29P24-201ENST00000486345 171 ntBASIC2.16□□□□□ -2.06
CLDND1Q9NY35 RNU6-998P-201ENST00000515894 101 ntBASIC2.16□□□□□ -2.06
CLDND1Q9NY35 Y_RNA.709-201ENST00000516952 92 ntBASIC2.16□□□□□ -2.06
CLDND1Q9NY35 AC099850.3-201ENST00000577678 321 ntTSL 3 BASIC2.16□□□□□ -2.06
CLDND1Q9NY35 DLEU2_5.2-201ENST00000610606 84 ntBASIC2.16□□□□□ -2.06
CLDND1Q9NY35 MIR342-201ENST00000362212 99 ntBASIC2.15□□□□□ -2.07
CLDND1Q9NY35 RNU6-1123P-201ENST00000362347 106 ntBASIC2.15□□□□□ -2.07
CLDND1Q9NY35 RNU6-457P-201ENST00000363999 107 ntBASIC2.15□□□□□ -2.07
CLDND1Q9NY35 SNORA1.2-201ENST00000365189 134 ntBASIC2.15□□□□□ -2.07
CLDND1Q9NY35 RNU6-321P-201ENST00000410912 106 ntBASIC2.15□□□□□ -2.07
CLDND1Q9NY35 SNX2P2-201ENST00000424553 323 ntBASIC2.15□□□□□ -2.07
CLDND1Q9NY35 Y_RNA.649-201ENST00000459077 103 ntBASIC2.15□□□□□ -2.07
CLDND1Q9NY35 RNU6ATAC9P-201ENST00000516210 116 ntBASIC2.15□□□□□ -2.07
CLDND1Q9NY35 AL035078.1-202ENST00000531627 413 ntTSL 2 BASIC2.15□□□□□ -2.07
CLDND1Q9NY35 FO624990.1-201ENST00000636373 85 ntBASIC2.15□□□□□ -2.07
CLDND1Q9NY35 SNORD116-21-201ENST00000384507 92 ntBASIC2.14□□□□□ -2.07
CLDND1Q9NY35 MIR194-1-201ENST00000384892 85 ntBASIC2.14□□□□□ -2.07
CLDND1Q9NY35 COX6CP6-201ENST00000490840 228 ntBASIC2.14□□□□□ -2.07
CLDND1Q9NY35 SNORA31.4-201ENST00000516049 129 ntBASIC2.14□□□□□ -2.07
CLDND1Q9NY35 SNORA31.15-201ENST00000516771 132 ntBASIC2.14□□□□□ -2.07
CLDND1Q9NY35 ZNF355P-201ENST00000427301 3216 ntBASIC2.14□□□□□ -2.07
CLDND1Q9NY35 WWP1P1-201ENST00000466609 2769 ntBASIC2.13□□□□□ -2.07
CLDND1Q9NY35 PYGO1-201ENST00000302000 8488 ntTSL 1 (best) BASIC2.13□□□□□ -2.07
CLDND1Q9NY35 SAMD9L-201ENST00000318238 7134 ntAPPRIS P1 TSL 1 (best) BASIC2.13□□□□□ -2.07
CLDND1Q9NY35 AP003174.1-201ENST00000306533 376 ntTSL 2 BASIC2.13□□□□□ -2.07
CLDND1Q9NY35 Y_RNA.370-201ENST00000365589 108 ntBASIC2.13□□□□□ -2.07
CLDND1Q9NY35 RNA5SP212-201ENST00000391223 107 ntBASIC2.13□□□□□ -2.07
CLDND1Q9NY35 BTF3P4-201ENST00000418852 495 ntBASIC2.13□□□□□ -2.07
CLDND1Q9NY35 SNORD123-201ENST00000459473 70 ntBASIC2.13□□□□□ -2.07
CLDND1Q9NY35 AC107297.1-201ENST00000459991 176 ntBASIC2.13□□□□□ -2.07
CLDND1Q9NY35 RNU2-13P-201ENST00000515909 113 ntBASIC2.13□□□□□ -2.07
CLDND1Q9NY35 AC007450.1-201ENST00000536492 188 ntTSL 3 BASIC2.13□□□□□ -2.07
CLDND1Q9NY35 AC021443.1-201ENST00000604478 211 ntBASIC2.13□□□□□ -2.07
CLDND1Q9NY35 MIR8070-201ENST00000616510 88 ntBASIC2.13□□□□□ -2.07
CLDND1Q9NY35 LMBR1-222ENST00000638959 93 ntTSL 5 BASIC2.13□□□□□ -2.07
CLDND1Q9NY35 CGGBP1-202ENST00000398392 5298 ntAPPRIS P1 BASIC2.12□□□□□ -2.07
CLDND1Q9NY35 Y_RNA.35-201ENST00000362601 101 ntBASIC2.12□□□□□ -2.07
CLDND1Q9NY35 RNY1P10-201ENST00000363268 113 ntBASIC2.12□□□□□ -2.07
CLDND1Q9NY35 SNORA25.9-201ENST00000365087 128 ntBASIC2.12□□□□□ -2.07
CLDND1Q9NY35 MIR548A1-201ENST00000385041 97 ntBASIC2.12□□□□□ -2.07
CLDND1Q9NY35 SNORD28B-201ENST00000390993 75 ntBASIC2.12□□□□□ -2.07
CLDND1Q9NY35 AL035398.1-201ENST00000430869 322 ntBASIC2.12□□□□□ -2.07
CLDND1Q9NY35 RNY4P20-201ENST00000516678 93 ntBASIC2.12□□□□□ -2.07
CLDND1Q9NY35 MIR548AR-201ENST00000582191 57 ntBASIC2.12□□□□□ -2.07
CLDND1Q9NY35 FAM106DP-201ENST00000586416 501 ntBASIC2.12□□□□□ -2.07
CLDND1Q9NY35 HSPE1P19-201ENST00000603327 295 ntBASIC2.12□□□□□ -2.07
CLDND1Q9NY35 UGP2-230ENST00000626380 276 ntTSL 5 BASIC2.12□□□□□ -2.07
CLDND1Q9NY35 RGPD1-204ENST00000559485 5247 ntAPPRIS P2 TSL 1 (best) BASIC2.11□□□□□ -2.07
CLDND1Q9NY35 RNA5SP190-201ENST00000365222 118 ntBASIC2.11□□□□□ -2.07
CLDND1Q9NY35 MIR570-201ENST00000384917 97 ntBASIC2.11□□□□□ -2.07
CLDND1Q9NY35 AL161935.2-201ENST00000414627 60 ntBASIC2.11□□□□□ -2.07
CLDND1Q9NY35 AC063976.4-201ENST00000421971 163 ntBASIC2.11□□□□□ -2.07
CLDND1Q9NY35 RNU2-11P-201ENST00000459191 187 ntBASIC2.11□□□□□ -2.07
CLDND1Q9NY35 SNORD13-201ENST00000459299 104 ntBASIC2.11□□□□□ -2.07
CLDND1Q9NY35 AC095038.3-201ENST00000634439 195 ntBASIC2.11□□□□□ -2.07
CLDND1Q9NY35 SENP7-206ENST00000394094 4703 ntAPPRIS ALT2 TSL 1 (best) BASIC2.1□□□□□ -2.07
CLDND1Q9NY35 RNU4-16P-201ENST00000364737 141 ntBASIC2.1□□□□□ -2.07
CLDND1Q9NY35 Y_RNA.298-201ENST00000364960 107 ntBASIC2.1□□□□□ -2.07
CLDND1Q9NY35 SNORA6-201ENST00000384033 151 ntBASIC2.1□□□□□ -2.07
CLDND1Q9NY35 SNORA24-201ENST00000384096 131 ntBASIC2.1□□□□□ -2.07
CLDND1Q9NY35 RNU6-880P-201ENST00000384526 107 ntBASIC2.1□□□□□ -2.07
CLDND1Q9NY35 MIR518E-201ENST00000385252 88 ntBASIC2.1□□□□□ -2.07
CLDND1Q9NY35 AC004965.1-201ENST00000413033 213 ntBASIC2.1□□□□□ -2.07
CLDND1Q9NY35 RNU7-164P-201ENST00000459221 62 ntBASIC2.1□□□□□ -2.07
CLDND1Q9NY35 LINC02514-201ENST00000509058 498 ntTSL 3 BASIC2.1□□□□□ -2.07
CLDND1Q9NY35 RNU6-917P-201ENST00000516294 104 ntBASIC2.1□□□□□ -2.07
CLDND1Q9NY35 SNORA25.15-201ENST00000516487 89 ntBASIC2.1□□□□□ -2.07
CLDND1Q9NY35 SUMO2P16-201ENST00000519475 264 ntBASIC2.1□□□□□ -2.07
CLDND1Q9NY35 IGHVIII-5-1-201ENST00000523059 99 ntBASIC2.1□□□□□ -2.07
CLDND1Q9NY35 AC022254.1-201ENST00000567857 235 ntBASIC2.1□□□□□ -2.07
CLDND1Q9NY35 MIR3683-201ENST00000580847 82 ntBASIC2.1□□□□□ -2.07
CLDND1Q9NY35 MIR4305-201ENST00000583252 102 ntBASIC2.1□□□□□ -2.07
CLDND1Q9NY35 AL049779.4-201ENST00000604500 156 ntBASIC2.1□□□□□ -2.07
CLDND1Q9NY35 AL773524.1-201ENST00000614065 229 ntBASIC2.1□□□□□ -2.07
CLDND1Q9NY35 MIR203B-201ENST00000636080 86 ntBASIC2.1□□□□□ -2.07
CLDND1Q9NY35 AC008555.8-201ENST00000623602 2168 ntBASIC2.1□□□□□ -2.07
CLDND1Q9NY35 MIR302B-201ENST00000362188 73 ntBASIC2.09□□□□□ -2.07
CLDND1Q9NY35 SNORA63.4-201ENST00000362763 126 ntBASIC2.09□□□□□ -2.07
CLDND1Q9NY35 Y_RNA.198-201ENST00000364013 98 ntBASIC2.09□□□□□ -2.07
CLDND1Q9NY35 SNORA70.7-201ENST00000384159 133 ntBASIC2.09□□□□□ -2.07
CLDND1Q9NY35 PDCD5P2-201ENST00000507570 312 ntBASIC2.09□□□□□ -2.07
CLDND1Q9NY35 TRMT112P2-201ENST00000512910 132 ntBASIC2.09□□□□□ -2.07
CLDND1Q9NY35 SNORA74.3-201ENST00000517108 154 ntBASIC2.09□□□□□ -2.07
CLDND1Q9NY35 AC106754.2-201ENST00000623006 233 ntBASIC2.09□□□□□ -2.07
CLDND1Q9NY35 AC005336.3-201ENST00000623833 2679 ntBASIC2.08□□□□□ -2.08
CLDND1Q9NY35 RNU6-755P-201ENST00000364400 103 ntBASIC2.08□□□□□ -2.08
CLDND1Q9NY35 RNU6-153P-201ENST00000364422 104 ntBASIC2.08□□□□□ -2.08
CLDND1Q9NY35 RNU6-439P-201ENST00000384188 106 ntBASIC2.08□□□□□ -2.08
CLDND1Q9NY35 MIR489-201ENST00000384923 84 ntBASIC2.08□□□□□ -2.08
CLDND1Q9NY35 AC244636.1-201ENST00000421152 228 ntBASIC2.08□□□□□ -2.08
CLDND1Q9NY35 JTBP1-201ENST00000441314 247 ntBASIC2.08□□□□□ -2.08
CLDND1Q9NY35 RPS29P29-201ENST00000456396 171 ntBASIC2.08□□□□□ -2.08
CLDND1Q9NY35 RNU7-123P-201ENST00000515911 60 ntBASIC2.08□□□□□ -2.08
CLDND1Q9NY35 AL359821.1-201ENST00000605519 182 ntBASIC2.08□□□□□ -2.08
CLDND1Q9NY35 AC021613.1-201ENST00000623880 111 ntBASIC2.08□□□□□ -2.08
CLDND1Q9NY35 ZNF260-203ENST00000588993 4174 ntAPPRIS P1 TSL 1 (best) BASIC2.08□□□□□ -2.08
CLDND1Q9NY35 OR2L2-202ENST00000641771 4300 ntAPPRIS P1 BASIC2.08□□□□□ -2.08
CLDND1Q9NY35 KNL1-204ENST00000527044 5404 ntTSL 5 BASIC2.07□□□□□ -2.08
CLDND1Q9NY35 BRDT-206ENST00000402388 3125 ntAPPRIS P3 TSL 1 (best) BASIC2.07□□□□□ -2.08
Retrieved 100 of 98,524 protein–RNA pairs in 233.1 ms